Wall clock time and date at job start Mon Mar 30 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38231 * 119.99872 * 2 1 4 4 C 1.38233 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.38241 * 120.00225 * 359.95059 * 4 3 2 6 6 C 1.50701 * 120.00230 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.46931 * 90.00047 * 6 5 4 8 8 N 1.39851 * 125.70312 * 270.17136 * 7 6 5 9 9 C 1.30262 * 109.54292 * 180.28348 * 8 7 6 10 10 C 1.41800 * 108.25224 * 359.74681 * 9 8 7 11 11 C 1.41194 * 126.63557 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00193 * 179.97438 * 11 10 9 13 13 C 1.39558 * 119.99515 * 0.02562 * 11 10 9 14 14 N 1.31192 * 120.00378 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99616 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47263 * 89.99614 * 15 13 11 17 17 H 1.48500 * 109.47165 * 209.99935 * 15 13 11 18 18 H 1.48500 * 109.47143 * 329.99696 * 15 13 11 19 19 C 1.35153 * 125.70234 * 90.00424 * 7 6 5 20 20 N 1.37732 * 126.56187 * 359.97438 * 19 7 6 21 21 C 1.38236 * 119.99404 * 0.27760 * 5 4 3 22 22 C 1.38226 * 120.00256 * 359.51489 * 21 5 4 23 23 H 1.09007 * 109.47409 * 90.00439 * 1 2 3 24 24 H 1.09003 * 109.47577 * 209.99903 * 1 2 3 25 25 H 1.09003 * 109.47615 * 330.00381 * 1 2 3 26 26 H 1.08001 * 120.00549 * 359.97217 * 3 2 1 27 27 H 1.08000 * 120.00002 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.46563 * 330.00039 * 6 5 4 29 29 H 1.08999 * 109.47069 * 210.00057 * 6 5 4 30 30 H 1.07994 * 125.87236 * 179.74030 * 9 8 7 31 31 H 0.97001 * 120.00185 * 180.02562 * 14 13 11 32 32 H 0.97001 * 120.00364 * 179.71931 * 20 19 7 33 33 H 0.97005 * 119.99910 * 359.43627 * 20 19 7 34 34 H 1.08007 * 119.99565 * 179.72707 * 21 5 4 35 35 H 1.08000 * 120.00024 * 180.25170 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 0.0000 0.0021 6 6 5.7787 0.0000 0.0033 7 7 6.2659 0.0011 1.3848 8 7 6.5341 1.1374 2.1547 9 6 6.9570 0.7759 3.3325 10 6 6.9766 -0.6411 3.3817 11 6 7.3709 -1.4407 4.4766 12 1 7.3432 -2.5174 4.3966 13 6 7.7952 -0.8397 5.6625 14 7 7.8284 0.4681 5.7598 15 14 8.3162 -1.8977 7.1112 16 1 9.7721 -2.1763 7.0226 17 1 8.0258 -1.1796 8.3782 18 1 7.5646 -3.1782 7.0846 19 6 6.5283 -1.0958 2.1296 20 7 6.3883 -2.4080 1.7351 21 6 3.5804 -1.1972 -0.0027 22 6 2.1982 -1.1972 0.0011 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1325 -0.0005 27 1 4.1204 2.1324 0.0001 28 1 6.1423 0.8895 -0.5111 29 1 6.1424 -0.8905 -0.5095 30 1 7.2434 1.4410 4.1337 31 1 8.1237 0.8858 6.5840 32 1 6.6093 -3.1253 2.3495 33 1 6.0650 -2.6148 0.8443 34 1 4.1205 -2.1325 -0.0059 35 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148958635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:16 Heat of formation + Delta-G solvation = 94.180003 kcal Electronic energy + Delta-G solvation = -18309.199027 eV Core-core repulsion = 15501.262537 eV Total energy + Delta-G solvation = -2807.936490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63834 -38.78190 -34.25886 -33.22111 -32.94128 -30.75802 -30.70560 -27.87727 -27.23360 -24.77329 -23.57802 -22.57373 -20.77582 -19.64580 -18.85753 -17.03476 -16.17901 -15.79066 -15.28391 -15.08681 -14.96194 -14.35980 -13.78921 -13.62643 -13.32663 -13.21415 -12.66454 -12.39690 -12.23512 -11.79061 -11.78372 -11.17377 -11.08786 -10.92680 -10.83283 -10.77422 -10.41597 -9.88988 -9.62953 -9.05610 -8.73714 -8.63567 -8.40445 -7.32529 -6.46387 -6.18527 -3.61560 1.43609 1.59303 3.18946 3.30584 3.33324 3.58855 3.71524 4.16029 4.30721 4.58896 4.83988 4.90709 5.05190 5.13923 5.16791 5.23976 5.50926 5.52805 5.62324 5.76360 5.78547 5.85394 5.87520 6.20522 6.22557 6.56231 6.70779 6.76625 6.91769 7.12730 7.17596 7.38506 7.80289 7.96895 8.29999 8.72686 8.82519 8.94311 9.30938 9.40745 9.73304 10.83229 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.005047 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.187490 B = 5547.017335 C = 5651.584342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.088 4.088 5 C -0.103 4.103 6 C 0.188 3.812 7 N -0.403 5.403 8 N -0.361 5.361 9 C 0.056 3.944 10 C -0.084 4.084 11 C -0.424 4.424 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.857 5.857 15 Si 0.909 3.091 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.212 3.788 20 N -0.860 5.860 21 C -0.097 4.097 22 C -0.125 4.125 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.202 0.798 31 H 0.268 0.732 32 H 0.404 0.596 33 H 0.374 0.626 34 H 0.117 0.883 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 -2.433 -11.136 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.107 4.107 5 C -0.104 4.104 6 C 0.064 3.936 7 N -0.194 5.194 8 N -0.185 5.185 9 C -0.128 4.128 10 C -0.098 4.098 11 C -0.461 4.461 12 H 0.077 0.923 13 C -0.148 4.148 14 N -0.492 5.492 15 Si 0.736 3.264 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.007 4.007 20 N -0.411 5.411 21 C -0.116 4.116 22 C -0.143 4.143 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.137 0.863 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.218 0.782 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.200 0.800 34 H 0.135 0.865 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.813 -1.191 -11.745 15.351 hybrid contribution 0.365 -1.660 1.189 2.075 sum -9.448 -2.851 -10.555 14.450 Atomic orbital electron populations 1.20763 0.91525 1.02637 1.01910 1.19877 0.95822 0.93331 1.00081 1.20985 0.94192 0.97341 1.01798 1.21055 0.93937 0.97874 0.97807 1.20328 0.96326 0.93447 1.00333 1.19967 0.88857 1.02756 0.81984 1.47524 1.58297 1.03470 1.10140 1.76697 1.29110 1.06016 1.06693 1.24834 0.97826 0.96519 0.93606 1.17431 1.08850 0.92371 0.91114 1.18333 1.39319 0.92695 0.95710 0.92289 1.25419 0.95366 0.94923 0.99066 1.69489 1.43403 1.09356 1.26911 0.86313 0.78942 0.80216 0.80924 1.20442 1.20950 1.19663 1.18125 1.09233 0.80482 0.92906 1.40609 1.80375 1.02963 1.17169 1.20963 0.94120 0.97345 0.99150 1.20928 0.94095 0.97327 1.01966 0.91477 0.91732 0.91694 0.86325 0.85833 0.89507 0.90604 0.78175 0.92161 0.76610 0.80012 0.86541 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.00 0.36 -0.74 16 2 C -0.09 -1.19 5.88 -104.63 -0.62 -1.81 16 3 C -0.13 -1.74 9.70 -39.59 -0.38 -2.13 16 4 C -0.09 -1.38 9.70 -39.58 -0.38 -1.76 16 5 C -0.10 -1.67 5.46 -104.62 -0.57 -2.24 16 6 C 0.19 3.23 6.34 -5.20 -0.03 3.20 16 7 N -0.40 -9.09 3.58 -60.86 -0.22 -9.30 16 8 N -0.36 -9.27 12.44 30.94 0.39 -8.88 16 9 C 0.06 1.57 10.90 -16.86 -0.18 1.38 16 10 C -0.08 -2.31 5.96 -106.54 -0.63 -2.94 16 11 C -0.42 -11.76 9.24 -37.97 -0.35 -12.11 16 12 H 0.06 1.55 7.36 -52.48 -0.39 1.16 16 13 C 0.06 1.59 5.49 -17.33 -0.10 1.50 16 14 N -0.86 -23.65 10.32 55.53 0.57 -23.07 16 15 Si 0.91 20.46 29.56 -169.99 -5.02 15.43 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 C 0.21 5.04 8.06 -153.29 -1.23 3.80 16 20 N -0.86 -16.14 9.03 31.65 0.29 -15.85 16 21 C -0.10 -1.44 9.70 -39.59 -0.38 -1.82 16 22 C -0.13 -1.69 9.70 -39.59 -0.38 -2.08 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 28 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 29 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 30 H 0.20 5.73 5.76 -52.49 -0.30 5.43 16 31 H 0.27 6.89 8.30 -40.82 -0.34 6.55 16 32 H 0.40 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.37 5.73 7.22 -40.82 -0.29 5.44 16 34 H 0.12 1.55 7.22 -52.48 -0.38 1.17 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -31.48 300.55 -8.54 -40.02 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -4.17 Total: 14.88 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -4.89 Total: -17.75 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 1.03 Total: -57.11 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.48 -8.54 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148958635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.200 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds