Wall clock time and date at job start Mon Mar 30 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38231 * 119.99872 * 2 1 4 4 C 1.38233 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.38241 * 120.00225 * 359.95059 * 4 3 2 6 6 C 1.50701 * 120.00230 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.46931 * 90.00047 * 6 5 4 8 8 N 1.39851 * 125.70312 * 270.17136 * 7 6 5 9 9 C 1.30262 * 109.54292 * 180.28348 * 8 7 6 10 10 C 1.41800 * 108.25224 * 359.74681 * 9 8 7 11 11 C 1.41194 * 126.63557 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00193 * 179.97438 * 11 10 9 13 13 C 1.39558 * 119.99515 * 0.02562 * 11 10 9 14 14 N 1.31192 * 120.00378 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99616 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47263 * 89.99614 * 15 13 11 17 17 H 1.48500 * 109.47165 * 209.99935 * 15 13 11 18 18 H 1.48500 * 109.47143 * 329.99696 * 15 13 11 19 19 C 1.35153 * 125.70234 * 90.00424 * 7 6 5 20 20 N 1.37732 * 126.56187 * 359.97438 * 19 7 6 21 21 C 1.38236 * 119.99404 * 0.27760 * 5 4 3 22 22 C 1.38226 * 120.00256 * 359.51489 * 21 5 4 23 23 H 1.09007 * 109.47409 * 90.00439 * 1 2 3 24 24 H 1.09003 * 109.47577 * 209.99903 * 1 2 3 25 25 H 1.09003 * 109.47615 * 330.00381 * 1 2 3 26 26 H 1.08001 * 120.00549 * 359.97217 * 3 2 1 27 27 H 1.08000 * 120.00002 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.46563 * 330.00039 * 6 5 4 29 29 H 1.08999 * 109.47069 * 210.00057 * 6 5 4 30 30 H 1.07994 * 125.87236 * 179.74030 * 9 8 7 31 31 H 0.97001 * 120.00185 * 180.02562 * 14 13 11 32 32 H 0.97001 * 120.00364 * 179.71931 * 20 19 7 33 33 H 0.97005 * 119.99910 * 359.43627 * 20 19 7 34 34 H 1.08007 * 119.99565 * 179.72707 * 21 5 4 35 35 H 1.08000 * 120.00024 * 180.25170 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1971 0.0005 5 6 4.2717 0.0000 0.0021 6 6 5.7787 0.0000 0.0033 7 7 6.2659 0.0011 1.3848 8 7 6.5341 1.1374 2.1547 9 6 6.9570 0.7759 3.3325 10 6 6.9766 -0.6411 3.3817 11 6 7.3709 -1.4407 4.4766 12 1 7.3432 -2.5174 4.3966 13 6 7.7952 -0.8397 5.6625 14 7 7.8284 0.4681 5.7598 15 14 8.3162 -1.8977 7.1112 16 1 9.7721 -2.1763 7.0226 17 1 8.0258 -1.1796 8.3782 18 1 7.5646 -3.1782 7.0846 19 6 6.5283 -1.0958 2.1296 20 7 6.3883 -2.4080 1.7351 21 6 3.5804 -1.1972 -0.0027 22 6 2.1982 -1.1972 0.0011 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1325 -0.0005 27 1 4.1204 2.1324 0.0001 28 1 6.1423 0.8895 -0.5111 29 1 6.1424 -0.8905 -0.5095 30 1 7.2434 1.4410 4.1337 31 1 8.1237 0.8858 6.5840 32 1 6.6093 -3.1253 2.3495 33 1 6.0650 -2.6148 0.8443 34 1 4.1205 -2.1325 -0.0059 35 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148958635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:16 Heat of formation + Delta-G solvation = 75.755101 kcal Electronic energy + Delta-G solvation = -18309.997991 eV Core-core repulsion = 15501.262537 eV Total energy + Delta-G solvation = -2808.735454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27920 -40.12056 -35.77189 -35.01794 -34.56842 -32.16834 -31.84693 -29.70866 -28.66861 -26.39612 -25.17156 -23.68210 -22.01120 -21.54058 -20.59191 -18.90662 -17.77124 -17.11951 -16.97789 -16.36921 -16.13788 -16.06334 -15.32414 -14.98043 -14.60475 -14.39579 -14.31796 -13.62203 -13.59739 -13.17384 -12.90202 -12.81226 -12.76533 -12.56519 -12.41010 -12.11804 -11.84875 -11.72605 -11.40510 -11.00363 -10.60429 -9.84165 -9.54309 -9.18027 -8.36545 -8.14603 -5.64090 0.29619 0.48737 1.42277 1.47930 1.59536 1.74862 2.13269 2.44142 2.55667 2.88890 3.44782 3.71068 3.79535 3.82392 4.05169 4.08117 4.11788 4.44283 4.53340 4.60673 4.82279 4.83471 4.92559 4.93734 5.14903 5.24908 5.27357 5.38389 5.46408 5.66532 5.66974 5.88367 6.09047 6.16456 6.29313 6.75589 7.08269 7.10094 7.36074 7.47783 7.81072 8.88113 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.005047 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.187490 B = 5547.017335 C = 5651.584342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.107 4.107 5 C -0.125 4.125 6 C 0.179 3.821 7 N -0.393 5.393 8 N -0.378 5.378 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.450 4.450 12 H 0.065 0.935 13 C 0.007 3.993 14 N -0.889 5.889 15 Si 0.980 3.020 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.241 3.759 20 N -0.839 5.839 21 C -0.105 4.105 22 C -0.132 4.132 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.137 0.863 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.182 0.818 31 H 0.269 0.731 32 H 0.411 0.589 33 H 0.396 0.604 34 H 0.131 0.869 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -4.486 -12.285 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.153 4.153 4 C -0.126 4.126 5 C -0.126 4.126 6 C 0.058 3.942 7 N -0.184 5.184 8 N -0.204 5.204 9 C -0.157 4.157 10 C -0.153 4.153 11 C -0.486 4.486 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.525 5.525 15 Si 0.805 3.195 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.188 1.188 19 C 0.016 3.984 20 N -0.392 5.392 21 C -0.123 4.123 22 C -0.150 4.150 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.198 0.802 31 H 0.079 0.921 32 H 0.242 0.758 33 H 0.225 0.775 34 H 0.149 0.851 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.435 -3.255 -12.941 17.573 hybrid contribution 0.721 -1.046 1.302 1.819 sum -10.715 -4.301 -11.639 16.394 Atomic orbital electron populations 1.20833 0.88986 1.03520 1.03363 1.20335 0.97771 0.92837 0.98146 1.21271 0.93650 0.98828 1.01535 1.21187 0.95042 0.97657 0.98681 1.20227 0.95388 0.94377 1.02639 1.20389 0.90096 1.04602 0.79149 1.47905 1.56652 1.02329 1.11480 1.76593 1.29973 1.07375 1.06475 1.24582 1.00010 0.96897 0.94233 1.17791 1.11776 0.92610 0.93116 1.18633 1.40295 0.93063 0.96616 0.91648 1.26282 0.95508 0.96154 1.01703 1.69644 1.44408 1.10889 1.27523 0.85208 0.78523 0.78543 0.77237 1.19975 1.20777 1.18765 1.18270 1.05799 0.82342 0.91949 1.40553 1.79182 1.01059 1.18397 1.21202 0.95003 0.97273 0.98842 1.21304 0.93823 0.98675 1.01161 0.89607 0.90676 0.91051 0.84497 0.86587 0.88837 0.87647 0.80172 0.92130 0.75838 0.77512 0.85085 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.01 71.23 0.71 -1.07 16 2 C -0.09 -2.13 5.88 -19.87 -0.12 -2.25 16 3 C -0.13 -3.54 9.70 22.27 0.22 -3.32 16 4 C -0.11 -3.29 9.70 22.27 0.22 -3.07 16 5 C -0.12 -3.88 5.46 -19.86 -0.11 -3.98 16 6 C 0.18 5.89 6.34 85.63 0.54 6.43 16 7 N -0.39 -17.52 3.58 -346.47 -1.24 -18.76 16 8 N -0.38 -19.92 12.44 -56.03 -0.70 -20.62 16 9 C 0.02 1.43 10.90 85.81 0.94 2.37 16 10 C -0.14 -7.79 5.96 -21.11 -0.13 -7.92 16 11 C -0.45 -25.31 9.24 23.31 0.22 -25.09 16 12 H 0.07 3.43 7.36 -2.91 -0.02 3.41 16 13 C 0.01 0.36 5.49 85.11 0.47 0.83 16 14 N -0.89 -51.02 10.32 21.77 0.22 -50.80 16 15 Si 0.98 42.51 29.56 68.60 2.03 44.54 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 19 C 0.24 11.25 8.06 133.00 1.07 12.33 16 20 N -0.84 -29.43 9.03 -53.76 -0.49 -29.92 16 21 C -0.10 -2.83 9.70 22.27 0.22 -2.61 16 22 C -0.13 -3.16 9.70 22.27 0.22 -2.95 16 23 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 25 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 26 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 27 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 28 H 0.09 2.94 8.09 -2.39 -0.02 2.92 16 29 H 0.11 2.80 7.42 -2.39 -0.02 2.79 16 30 H 0.18 11.03 5.76 -2.91 -0.02 11.01 16 31 H 0.27 14.37 8.30 -92.71 -0.77 13.60 16 32 H 0.41 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.40 10.72 7.22 -92.70 -0.67 10.05 16 34 H 0.13 3.03 7.22 -2.91 -0.02 3.01 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -69.99 300.55 3.97 -66.02 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -0.31 Total: 39.85 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 4.46 Total: -30.32 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -2.20 Total: -120.09 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -69.99 3.97 -66.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148958635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.775 kcal (2) G-P(sol) polarization free energy of solvation -69.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds