Wall clock time and date at job start Mon Mar 30 2020 04:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.99810 * 2 1 4 4 C 1.38215 * 120.00034 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99733 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00261 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00352 * 179.97438 * 2 1 3 8 8 C 1.50694 * 119.99586 * 0.06088 * 7 2 1 9 9 N 1.46505 * 109.47078 * 84.89190 * 8 7 2 10 10 N 1.39849 * 125.69909 * 269.68814 * 9 8 7 11 11 C 1.30262 * 109.53811 * 179.80222 * 10 9 8 12 12 C 1.41808 * 108.25587 * 0.45381 * 11 10 9 13 13 C 1.41189 * 126.63496 * 179.68120 * 12 11 10 14 14 H 1.08006 * 119.99739 * 187.22660 * 13 12 11 15 15 C 1.39556 * 120.00202 * 7.21773 * 13 12 11 16 16 N 1.31194 * 119.99852 * 10.82170 * 15 13 12 17 17 Si 1.86799 * 120.00224 * 190.81675 * 15 13 12 18 18 H 1.48501 * 109.46857 * 93.92083 * 17 15 13 19 19 H 1.48496 * 109.47028 * 213.92041 * 17 15 13 20 20 H 1.48501 * 109.46825 * 333.92324 * 17 15 13 21 21 C 1.35151 * 125.70098 * 89.99754 * 9 8 7 22 22 N 1.37730 * 126.56229 * 0.02562 * 21 9 8 23 23 H 1.08995 * 109.47648 * 90.00059 * 1 2 3 24 24 H 1.09001 * 109.46874 * 210.00214 * 1 2 3 25 25 H 1.09004 * 109.47540 * 329.99468 * 1 2 3 26 26 H 1.08002 * 119.99885 * 0.27628 * 3 2 1 27 27 H 1.08000 * 120.00049 * 179.97438 * 4 3 2 28 28 H 1.07998 * 119.99617 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.99933 * 179.97438 * 6 5 4 30 30 H 1.09006 * 109.47048 * 204.88764 * 8 7 2 31 31 H 1.09005 * 109.47736 * 324.89052 * 8 7 2 32 32 H 1.07998 * 125.87196 * 180.12953 * 11 10 9 33 33 H 0.97000 * 120.00552 * 179.97438 * 16 15 13 34 34 H 0.97000 * 120.00328 * 359.97438 * 22 21 9 35 35 H 0.97002 * 120.00257 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 -0.0003 9 7 1.0952 -2.8633 -1.3764 10 7 -0.0819 -2.5041 -2.0406 11 6 -0.0648 -2.9880 -3.2499 12 6 1.1454 -3.7065 -3.4237 13 6 1.5583 -4.3925 -4.5867 14 1 2.4488 -5.0033 -4.5658 15 6 0.8157 -4.2815 -5.7630 16 7 -0.1360 -3.3832 -5.8557 17 14 1.1769 -5.4116 -7.2058 18 1 0.2814 -6.5946 -7.1441 19 1 0.9446 -4.6807 -8.4774 20 1 2.5918 -5.8581 -7.1427 21 6 1.8539 -3.6043 -2.2141 22 7 3.0855 -4.1545 -1.9357 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6582 2.1327 0.0045 27 1 4.1204 2.1328 -0.0010 28 1 5.3516 0.0002 -0.0014 29 1 4.1207 -2.1321 0.0001 30 1 2.0699 -3.2828 0.4327 31 1 0.5343 -2.3964 0.5900 32 1 -0.8413 -2.8676 -3.9908 33 1 -0.6519 -3.3057 -6.6734 34 1 3.4893 -4.0234 -1.0635 35 1 3.5494 -4.6726 -2.6120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148963525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:18 Heat of formation + Delta-G solvation = 97.412725 kcal Electronic energy + Delta-G solvation = -18669.709326 eV Core-core repulsion = 15861.913017 eV Total energy + Delta-G solvation = -2807.796309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72736 -38.72594 -33.91786 -33.25559 -32.80686 -31.99993 -29.65479 -27.71093 -26.70853 -25.56779 -23.82861 -21.92999 -20.69765 -19.67379 -18.80214 -17.00893 -16.31805 -15.88205 -15.33348 -15.05472 -14.91033 -14.36354 -13.89759 -13.41163 -13.00780 -12.92016 -12.58256 -12.32401 -12.21826 -11.76585 -11.65916 -11.22392 -11.07811 -10.84762 -10.79518 -10.67425 -10.40171 -9.91186 -9.62216 -8.98874 -8.68843 -8.60085 -8.38508 -7.33995 -6.46483 -6.20324 -3.59860 1.49668 1.59620 3.19021 3.31191 3.33548 3.59717 3.73068 4.16369 4.31282 4.55778 4.89363 5.00785 5.08153 5.17527 5.22151 5.30263 5.50945 5.72877 5.77495 5.79047 5.87929 6.08799 6.15150 6.21993 6.56070 6.63913 6.65620 6.82052 6.92435 7.12594 7.21303 7.38675 7.79092 7.94421 8.27640 8.72435 8.80434 8.93831 9.30285 9.40447 9.71221 10.82521 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028580 B = 0.005688 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.457624 B = 4921.777532 C = 5164.744554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.134 4.134 6 C -0.097 4.097 7 C -0.103 4.103 8 C 0.186 3.814 9 N -0.401 5.401 10 N -0.356 5.356 11 C 0.059 3.941 12 C -0.081 4.081 13 C -0.428 4.428 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.852 5.852 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.213 3.787 22 N -0.860 5.860 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.192 0.808 33 H 0.267 0.733 34 H 0.374 0.626 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 4.938 11.153 13.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.152 4.152 6 C -0.116 4.116 7 C -0.105 4.105 8 C 0.063 3.937 9 N -0.192 5.192 10 N -0.180 5.180 11 C -0.125 4.125 12 C -0.095 4.095 13 C -0.464 4.464 14 H 0.077 0.923 15 C -0.146 4.146 16 N -0.487 5.487 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.007 4.007 22 N -0.411 5.411 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.209 0.791 33 H 0.078 0.922 34 H 0.200 0.800 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.459 5.726 11.865 13.908 hybrid contribution 1.234 -1.102 -1.341 2.130 sum 5.692 4.624 10.524 12.827 Atomic orbital electron populations 1.20846 0.90692 1.01646 1.03772 1.19840 0.96508 0.92312 0.96785 1.20999 0.94228 0.97404 1.02070 1.21064 0.94324 0.97792 1.00375 1.21011 0.99494 0.92585 1.02077 1.20952 0.93500 0.97929 0.99243 1.20179 0.93781 0.95406 1.01086 1.19978 0.98864 0.92386 0.82482 1.47473 1.16260 1.45612 1.09870 1.76650 1.02859 1.28794 1.09705 1.24443 0.98985 0.96782 0.92307 1.17396 0.94203 1.06279 0.91622 1.18308 1.09161 1.25627 0.93351 0.92284 1.25416 0.95187 0.95135 0.98858 1.69666 1.20875 1.30738 1.27384 0.86369 0.78880 0.80651 0.80905 1.20403 1.21077 1.19642 1.18112 0.88043 1.01714 0.92853 1.40598 1.19413 1.63991 1.17101 0.89605 0.91264 0.92609 0.86354 0.86505 0.86465 0.86607 0.90770 0.89246 0.79122 0.92225 0.80021 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.51 36.00 0.34 -1.37 16 2 C -0.05 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.84 9.70 -39.58 -0.38 -2.22 16 4 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 5 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 6 C -0.10 -1.44 9.68 -39.59 -0.38 -1.83 16 7 C -0.10 -1.68 5.46 -104.63 -0.57 -2.25 16 8 C 0.19 3.17 5.84 -5.19 -0.03 3.14 16 9 N -0.40 -8.81 3.58 -60.85 -0.22 -9.03 16 10 N -0.36 -8.76 12.20 30.94 0.38 -8.38 16 11 C 0.06 1.60 10.86 -16.85 -0.18 1.42 16 12 C -0.08 -2.21 5.92 -106.54 -0.63 -2.84 16 13 C -0.43 -11.81 9.22 -37.97 -0.35 -12.16 16 14 H 0.06 1.55 7.41 -52.48 -0.39 1.16 16 15 C 0.06 1.65 5.45 -17.33 -0.09 1.56 16 16 N -0.85 -23.48 10.58 55.53 0.59 -22.90 16 17 Si 0.90 20.40 29.57 -169.99 -5.03 15.37 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 C 0.21 4.99 8.06 -153.30 -1.23 3.75 16 22 N -0.86 -16.13 9.03 31.65 0.29 -15.85 16 23 H 0.09 1.52 8.00 -51.93 -0.42 1.10 16 24 H 0.07 1.03 6.03 -51.93 -0.31 0.72 16 25 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.51 7.53 -52.49 -0.40 1.12 16 30 H 0.07 1.09 7.38 -51.93 -0.38 0.71 16 31 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 32 H 0.19 5.34 6.04 -52.49 -0.32 5.03 16 33 H 0.27 6.87 8.30 -40.82 -0.34 6.53 16 34 H 0.37 5.75 7.53 -40.82 -0.31 5.45 16 35 H 0.40 7.34 8.33 -40.82 -0.34 7.00 16 LS Contribution 296.93 15.07 4.47 4.47 Total: -1.00 -30.82 296.93 -8.45 -39.28 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -4.00 Total: 15.46 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -4.93 Total: -18.43 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 1.03 Total: -56.15 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.82 -8.45 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148963525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.691 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds