Wall clock time and date at job start Mon Mar 30 2020 04:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38263 * 119.99810 * 2 1 4 4 C 1.38215 * 120.00034 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99733 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00261 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00352 * 179.97438 * 2 1 3 8 8 C 1.50694 * 119.99586 * 0.06088 * 7 2 1 9 9 N 1.46505 * 109.47078 * 84.89190 * 8 7 2 10 10 N 1.39849 * 125.69909 * 269.68814 * 9 8 7 11 11 C 1.30262 * 109.53811 * 179.80222 * 10 9 8 12 12 C 1.41808 * 108.25587 * 0.45381 * 11 10 9 13 13 C 1.41189 * 126.63496 * 179.68120 * 12 11 10 14 14 H 1.08006 * 119.99739 * 187.22660 * 13 12 11 15 15 C 1.39556 * 120.00202 * 7.21773 * 13 12 11 16 16 N 1.31194 * 119.99852 * 10.82170 * 15 13 12 17 17 Si 1.86799 * 120.00224 * 190.81675 * 15 13 12 18 18 H 1.48501 * 109.46857 * 93.92083 * 17 15 13 19 19 H 1.48496 * 109.47028 * 213.92041 * 17 15 13 20 20 H 1.48501 * 109.46825 * 333.92324 * 17 15 13 21 21 C 1.35151 * 125.70098 * 89.99754 * 9 8 7 22 22 N 1.37730 * 126.56229 * 0.02562 * 21 9 8 23 23 H 1.08995 * 109.47648 * 90.00059 * 1 2 3 24 24 H 1.09001 * 109.46874 * 210.00214 * 1 2 3 25 25 H 1.09004 * 109.47540 * 329.99468 * 1 2 3 26 26 H 1.08002 * 119.99885 * 0.27628 * 3 2 1 27 27 H 1.08000 * 120.00049 * 179.97438 * 4 3 2 28 28 H 1.07998 * 119.99617 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.99933 * 179.97438 * 6 5 4 30 30 H 1.09006 * 109.47048 * 204.88764 * 8 7 2 31 31 H 1.09005 * 109.47736 * 324.89052 * 8 7 2 32 32 H 1.07998 * 125.87196 * 180.12953 * 11 10 9 33 33 H 0.97000 * 120.00552 * 179.97438 * 16 15 13 34 34 H 0.97000 * 120.00328 * 359.97438 * 22 21 9 35 35 H 0.97002 * 120.00257 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 -0.0003 9 7 1.0952 -2.8633 -1.3764 10 7 -0.0819 -2.5041 -2.0406 11 6 -0.0648 -2.9880 -3.2499 12 6 1.1454 -3.7065 -3.4237 13 6 1.5583 -4.3925 -4.5867 14 1 2.4488 -5.0033 -4.5658 15 6 0.8157 -4.2815 -5.7630 16 7 -0.1360 -3.3832 -5.8557 17 14 1.1769 -5.4116 -7.2058 18 1 0.2814 -6.5946 -7.1441 19 1 0.9446 -4.6807 -8.4774 20 1 2.5918 -5.8581 -7.1427 21 6 1.8539 -3.6043 -2.2141 22 7 3.0855 -4.1545 -1.9357 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6582 2.1327 0.0045 27 1 4.1204 2.1328 -0.0010 28 1 5.3516 0.0002 -0.0014 29 1 4.1207 -2.1321 0.0001 30 1 2.0699 -3.2828 0.4327 31 1 0.5343 -2.3964 0.5900 32 1 -0.8413 -2.8676 -3.9908 33 1 -0.6519 -3.3057 -6.6734 34 1 3.4893 -4.0234 -1.0635 35 1 3.5494 -4.6726 -2.6120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148963525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:17 Heat of formation + Delta-G solvation = 79.453171 kcal Electronic energy + Delta-G solvation = -18670.488110 eV Core-core repulsion = 15861.913017 eV Total energy + Delta-G solvation = -2808.575093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31877 -40.11155 -35.57329 -35.00068 -34.34127 -33.26814 -31.16712 -29.58470 -27.95237 -27.08073 -25.64621 -23.11084 -21.95917 -21.55619 -20.49532 -18.86048 -17.77039 -17.26089 -16.95978 -16.48126 -16.13976 -16.06956 -15.39260 -14.94363 -14.55262 -14.29876 -13.98274 -13.73214 -13.58805 -13.19368 -12.98486 -12.86075 -12.77044 -12.61025 -12.37731 -11.92827 -11.83784 -11.72466 -11.36951 -10.93115 -10.58111 -9.77747 -9.53743 -9.17205 -8.35342 -8.14979 -5.61149 0.34663 0.49275 1.41744 1.47799 1.58958 1.76905 2.15872 2.44125 2.55126 2.91568 3.47202 3.70801 3.79269 3.84435 4.06033 4.07094 4.22254 4.36486 4.54147 4.67351 4.79808 4.86358 4.93052 4.98826 5.11854 5.28430 5.36436 5.40183 5.55245 5.58813 5.75590 5.86226 6.11518 6.17161 6.30555 6.74672 7.10079 7.10969 7.36016 7.49553 7.82206 8.87890 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028580 B = 0.005688 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.457624 B = 4921.777532 C = 5164.744554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.125 4.125 8 C 0.177 3.823 9 N -0.390 5.390 10 N -0.363 5.363 11 C 0.029 3.971 12 C -0.136 4.136 13 C -0.453 4.453 14 H 0.063 0.937 15 C 0.010 3.990 16 N -0.886 5.886 17 Si 0.975 3.025 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.239 3.761 22 N -0.840 5.840 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.171 0.829 33 H 0.268 0.732 34 H 0.395 0.605 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 5.126 12.450 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.077 4.077 3 C -0.157 4.157 4 C -0.134 4.134 5 C -0.155 4.155 6 C -0.125 4.125 7 C -0.126 4.126 8 C 0.056 3.944 9 N -0.181 5.181 10 N -0.189 5.189 11 C -0.154 4.154 12 C -0.151 4.151 13 C -0.489 4.489 14 H 0.081 0.919 15 C -0.194 4.194 16 N -0.521 5.521 17 Si 0.800 3.200 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.187 1.187 21 C 0.015 3.985 22 N -0.393 5.393 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.155 0.845 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.188 0.812 33 H 0.078 0.922 34 H 0.224 0.776 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.867 5.919 13.208 16.019 hybrid contribution 0.608 -1.057 -1.503 1.935 sum 7.475 4.862 11.705 14.714 Atomic orbital electron populations 1.20755 0.90873 1.02778 1.01934 1.20059 0.96739 0.93166 0.97746 1.21310 0.95109 0.97564 1.01670 1.21490 0.94075 0.99187 0.98669 1.21412 1.01054 0.92142 1.00866 1.21230 0.92959 0.99413 0.98935 1.20144 0.94596 0.94771 1.03133 1.20382 1.00123 0.94118 0.79744 1.47847 1.14985 1.44047 1.11197 1.76573 1.04237 1.28999 1.09051 1.24179 0.99330 0.98748 0.93126 1.17746 0.95391 1.08524 0.93430 1.18586 1.09803 1.26291 0.94205 0.91859 1.26246 0.95153 0.96498 1.01503 1.69807 1.21988 1.32254 1.28061 0.85276 0.78947 0.78413 0.77351 1.20136 1.20894 1.18686 1.18255 0.88678 0.99669 0.91941 1.40545 1.17596 1.62771 1.18400 0.92829 0.91620 0.90099 0.84549 0.83533 0.83670 0.84964 0.87956 0.88492 0.81210 0.92210 0.77568 0.75935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.21 9.51 71.23 0.68 -2.53 16 2 C -0.08 -2.34 5.88 -19.87 -0.12 -2.46 16 3 C -0.14 -3.64 9.70 22.27 0.22 -3.42 16 4 C -0.12 -2.69 10.05 22.27 0.22 -2.46 16 5 C -0.14 -3.21 10.05 22.27 0.22 -2.98 16 6 C -0.11 -2.84 9.68 22.27 0.22 -2.62 16 7 C -0.13 -3.85 5.46 -19.87 -0.11 -3.96 16 8 C 0.18 5.74 5.84 85.63 0.50 6.24 16 9 N -0.39 -16.93 3.58 -346.44 -1.24 -18.17 16 10 N -0.36 -18.34 12.20 -56.02 -0.68 -19.03 16 11 C 0.03 1.61 10.86 85.81 0.93 2.55 16 12 C -0.14 -7.59 5.92 -21.11 -0.12 -7.72 16 13 C -0.45 -25.40 9.22 23.31 0.21 -25.19 16 14 H 0.06 3.34 7.41 -2.91 -0.02 3.32 16 15 C 0.01 0.53 5.45 85.11 0.46 1.00 16 16 N -0.89 -50.83 10.58 21.77 0.23 -50.60 16 17 Si 0.98 42.56 29.57 68.60 2.03 44.59 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 C 0.24 11.04 8.06 133.00 1.07 12.11 16 22 N -0.84 -29.55 9.03 -53.77 -0.49 -30.03 16 23 H 0.05 1.95 8.00 -2.39 -0.02 1.94 16 24 H 0.06 1.96 6.03 -2.39 -0.01 1.94 16 25 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 26 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 27 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.13 2.95 7.53 -2.91 -0.02 2.93 16 30 H 0.10 2.70 7.38 -2.38 -0.02 2.68 16 31 H 0.10 2.99 6.17 -2.38 -0.01 2.97 16 32 H 0.17 10.20 6.04 -2.91 -0.02 10.18 16 33 H 0.27 14.35 8.30 -92.71 -0.77 13.58 16 34 H 0.40 10.75 7.53 -92.71 -0.70 10.06 16 35 H 0.41 13.98 8.33 -92.71 -0.77 13.20 16 Total: -1.00 -68.72 296.93 3.90 -64.81 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.34 Total: 39.89 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 4.39 Total: -31.47 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -2.18 Total: -117.83 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.72 3.90 -64.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148963525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.268 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds