Wall clock time and date at job start Mon Mar 30 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47195 * 2 1 4 4 N 1.46503 * 109.46985 * 240.00727 * 2 1 3 5 5 C 1.34771 * 120.00403 * 84.99499 * 4 2 1 6 6 O 1.21279 * 119.99861 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00310 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47443 * 180.02562 * 7 5 4 9 9 C 1.76192 * 99.99886 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00188 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99996 * 179.97438 * 9 8 7 12 12 N 1.31635 * 119.99792 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00205 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47003 * 90.00611 * 13 11 9 15 15 H 1.48501 * 109.47055 * 210.00346 * 13 11 9 16 16 H 1.48499 * 109.47378 * 330.00351 * 13 11 9 17 17 C 1.52995 * 109.47311 * 120.00328 * 2 1 3 18 18 C 1.54268 * 110.03213 * 295.60359 * 17 2 1 19 19 C 1.54890 * 104.19342 * 217.10506 * 18 17 2 20 20 C 1.54884 * 102.75077 * 37.93991 * 19 18 17 21 21 C 1.53875 * 110.03432 * 178.43447 * 17 2 1 22 22 H 1.09003 * 109.47433 * 65.60279 * 1 2 3 23 23 H 1.08993 * 109.47246 * 185.60727 * 1 2 3 24 24 H 1.09005 * 109.46809 * 305.60633 * 1 2 3 25 25 H 0.97002 * 119.99391 * 265.00318 * 4 2 1 26 26 H 1.09006 * 109.46978 * 300.00718 * 7 5 4 27 27 H 1.09004 * 109.46904 * 60.00365 * 7 5 4 28 28 H 0.96992 * 119.99946 * 179.97438 * 12 11 9 29 29 H 1.09006 * 110.01530 * 57.04481 * 17 2 1 30 30 H 1.08998 * 110.48692 * 335.77939 * 18 17 2 31 31 H 1.08997 * 110.48732 * 98.43075 * 18 17 2 32 32 H 1.09003 * 110.75392 * 279.62569 * 19 18 17 33 33 H 1.09000 * 110.91155 * 156.33140 * 19 18 17 34 34 H 1.09003 * 110.48926 * 203.37559 * 20 19 18 35 35 H 1.08999 * 110.59830 * 80.79217 * 20 19 18 36 36 H 1.08997 * 110.03153 * 238.57188 * 21 17 2 37 37 H 1.09006 * 110.02728 * 359.95113 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8589 1.1587 -2.4115 7 6 2.6498 -0.7282 -3.5876 8 16 2.7111 0.4350 -4.9730 9 6 3.3155 -0.6298 -6.2400 10 1 3.5248 -1.6663 -6.0201 11 6 3.5218 -0.1368 -7.5210 12 7 3.2663 1.1263 -7.7892 13 14 4.1619 -1.2658 -8.8645 14 1 3.0167 -1.9034 -9.5625 15 1 4.9571 -0.4753 -9.8381 16 1 5.0207 -2.3162 -8.2609 17 6 2.0400 -0.7213 1.2491 18 6 1.6257 0.0571 2.5150 19 6 2.8361 -0.0974 3.4690 20 6 4.0449 -0.0087 2.5047 21 6 3.5782 -0.7631 1.2426 22 1 -0.3634 0.4245 -0.9359 23 1 -0.3633 -1.0227 0.1004 24 1 -0.3633 0.5984 0.8356 25 1 2.2489 -1.6317 -1.1528 26 1 3.6491 -1.1201 -3.3980 27 1 1.9775 -1.5506 -3.8327 28 1 3.4108 1.4709 -8.6842 29 1 1.6391 -1.7343 1.2849 30 1 1.4578 1.1078 2.2788 31 1 0.7323 -0.3829 2.9580 32 1 2.8119 -1.0651 3.9701 33 1 2.8630 0.7128 4.1977 34 1 4.9170 -0.4966 2.9401 35 1 4.2699 1.0308 2.2664 36 1 3.9237 -1.7963 1.2760 37 1 3.9612 -0.2702 0.3490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172092782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:09 Heat of formation + Delta-G solvation = -66.739673 kcal Electronic energy + Delta-G solvation = -16889.426611 eV Core-core repulsion = 14177.663320 eV Total energy + Delta-G solvation = -2711.763291 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75797 -38.12505 -34.69175 -32.41432 -31.44341 -29.09705 -28.46542 -27.59059 -25.46929 -22.69707 -20.91587 -20.08392 -19.82921 -17.79606 -16.44140 -16.32772 -15.61615 -15.00736 -14.81265 -14.78860 -14.03769 -13.53640 -13.37588 -13.29134 -12.96530 -12.60066 -12.31824 -11.92194 -11.56475 -11.28132 -11.25088 -11.19221 -11.05297 -11.01112 -10.92554 -10.81427 -10.73933 -10.45222 -9.79398 -9.31549 -9.05550 -8.81461 -8.21333 -6.47996 -6.20291 -3.90523 3.07459 3.15517 3.23253 3.29095 3.33891 3.75539 4.21982 4.39915 4.40649 4.51155 4.95838 5.14614 5.16589 5.22880 5.25785 5.27016 5.43419 5.45174 5.46941 5.58512 5.64097 5.69581 5.72728 5.77951 5.90842 5.92557 5.98204 6.10610 6.13943 6.16948 6.18986 6.33399 6.76182 7.60907 7.79635 8.36614 8.68591 9.24997 10.87166 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.043644 B = 0.003855 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.397130 B = 7261.629159 C = 7510.270443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.734 5.734 5 C 0.532 3.468 6 O -0.519 6.519 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.098 4.098 18 C -0.115 4.115 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.124 4.124 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.396 0.604 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.268 0.732 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 -5.980 20.648 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.387 5.387 5 C 0.318 3.682 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.117 4.117 18 C -0.153 4.153 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.162 4.162 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.230 0.770 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.283 -3.855 20.408 20.894 hybrid contribution 0.823 -2.607 -0.844 2.861 sum -1.459 -6.462 19.565 20.656 Atomic orbital electron populations 1.22200 0.95622 1.01709 1.02643 1.21000 0.93757 0.97404 0.83394 0.89509 1.46096 1.69212 1.13850 1.09561 1.20285 0.76872 0.87234 0.83790 1.90693 1.48416 1.15772 1.84421 1.23538 1.03601 1.04814 0.98471 1.85385 1.86259 1.12945 0.98810 1.22876 1.50889 0.98179 0.96433 0.90965 1.24994 0.95125 0.95533 0.97949 1.70021 1.45615 1.13200 1.21475 0.86168 0.78823 0.79954 0.80544 1.20286 1.20760 1.19701 1.22077 0.95900 0.99599 0.94168 1.22380 0.97883 1.00612 0.94460 1.22494 0.94862 1.01469 0.97424 1.22360 0.97676 1.00726 0.95536 1.22233 0.94599 1.00603 0.98726 0.91808 0.92778 0.91927 0.77038 0.89332 0.89339 0.92205 0.90692 0.91109 0.91532 0.91677 0.91671 0.91896 0.91571 0.91887 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.21 37.16 0.34 -1.53 16 2 C 0.15 1.79 1.84 -67.93 -0.12 1.67 16 3 H 0.09 1.24 7.52 -51.93 -0.39 0.85 16 4 N -0.73 -9.92 4.35 -53.81 -0.23 -10.16 16 5 C 0.53 10.01 7.81 -10.99 -0.09 9.92 16 6 O -0.52 -11.86 15.52 5.56 0.09 -11.77 16 7 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 8 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 9 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 13 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.10 -0.89 2.55 -89.50 -0.23 -1.12 16 18 C -0.12 -0.92 5.47 -25.07 -0.14 -1.06 16 19 C -0.12 -0.93 6.91 -24.74 -0.17 -1.10 16 20 C -0.13 -1.06 6.83 -25.08 -0.17 -1.24 16 21 C -0.12 -1.16 6.18 -25.61 -0.16 -1.32 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 25 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 26 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 27 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.61 7.80 -51.93 -0.40 0.20 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -33.28 316.96 -8.30 -41.58 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.11 Total: 0.32 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.31 Total: -11.77 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.50 Total: -35.76 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.28 -8.30 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172092782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.156 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds