Wall clock time and date at job start Mon Mar 30 2020 04:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30586 * 1 3 3 Si 1.86804 * 120.00311 * 2 1 4 4 H 1.48497 * 109.47114 * 239.99928 * 3 2 1 5 5 H 1.48497 * 109.46761 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47267 * 119.99500 * 3 2 1 7 7 C 1.40348 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00471 * 180.02562 * 7 2 1 9 9 C 1.40192 * 119.99612 * 0.27424 * 7 2 1 10 10 N 1.32459 * 125.30581 * 359.74995 * 9 7 2 11 11 C 1.33973 * 109.78044 * 179.97438 * 10 9 7 12 12 C 1.40534 * 133.19584 * 180.02562 * 11 10 9 13 13 C 1.36355 * 119.84970 * 180.02562 * 12 11 10 14 14 C 1.39038 * 120.76007 * 359.97438 * 13 12 11 15 15 C 1.37969 * 120.57257 * 0.02562 * 14 13 12 16 16 C 1.38715 * 119.76254 * 0.02562 * 15 14 13 17 17 N 1.37851 * 125.30034 * 179.44300 * 9 7 2 18 18 C 1.46493 * 126.54076 * 359.97438 * 17 9 7 19 19 C 1.50704 * 109.47417 * 90.02357 * 18 17 9 20 20 C 1.30999 * 120.00295 * 127.25851 * 19 18 17 21 21 C 1.50697 * 119.99823 * 7.72017 * 20 19 18 22 22 N 1.46902 * 109.47153 * 126.78004 * 21 20 19 23 23 H 0.96998 * 119.99299 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.07786 * 359.97438 * 12 11 10 25 25 H 1.08003 * 119.62247 * 179.97438 * 13 12 11 26 26 H 1.08001 * 119.71717 * 180.02562 * 14 13 12 27 27 H 1.07998 * 120.11390 * 179.97438 * 15 14 13 28 28 H 1.09004 * 109.47252 * 210.01897 * 18 17 9 29 29 H 1.08995 * 109.47246 * 330.01966 * 18 17 9 30 30 H 1.08000 * 119.99613 * 307.25130 * 19 18 17 31 31 H 1.07993 * 119.99862 * 187.72564 * 20 19 18 32 32 H 1.08996 * 109.47412 * 246.77799 * 21 20 19 33 33 H 1.08999 * 109.47665 * 6.78351 * 21 20 19 34 34 H 1.00901 * 111.00110 * 56.04430 * 22 21 20 35 35 H 1.00894 * 111.00142 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0937 1.6963 -1.2125 5 1 1.2750 2.7464 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0076 -1.2154 0.0005 8 1 3.0876 -1.2155 0.0010 9 6 1.3066 -2.4295 -0.0047 10 7 -0.0123 -2.5519 -0.0057 11 6 -0.3473 -3.8491 -0.0118 12 6 -1.5797 -4.5244 -0.0157 13 6 -1.6067 -5.8876 -0.0213 14 6 -0.4262 -6.6222 -0.0237 15 6 0.7972 -5.9844 -0.0199 16 6 0.8511 -4.5983 -0.0131 17 7 1.8825 -3.6819 -0.0157 18 6 3.3163 -3.9825 -0.0244 19 6 3.8145 -4.0956 1.3934 20 6 4.4784 -5.1597 1.7715 21 6 4.8953 -6.1890 0.7529 22 7 6.3395 -6.4332 0.8663 23 1 -0.4849 0.8401 -0.0004 24 1 -2.5035 -3.9648 -0.0135 25 1 -2.5559 -6.4028 -0.0239 26 1 -0.4671 -7.7014 -0.0285 27 1 1.7096 -6.5622 -0.0213 28 1 3.4869 -4.9245 -0.5456 29 1 3.8522 -3.1825 -0.5351 30 1 3.6243 -3.2992 2.0977 31 1 4.7269 -5.2993 2.8131 32 1 4.3546 -7.1181 0.9328 33 1 4.6663 -5.8234 -0.2481 34 1 6.5866 -6.7115 1.8041 35 1 6.6439 -7.1207 0.1935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217627606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:17 Heat of formation + Delta-G solvation = 87.576011 kcal Electronic energy + Delta-G solvation = -18497.568856 eV Core-core repulsion = 15689.345996 eV Total energy + Delta-G solvation = -2808.222861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39627 -36.80396 -35.94386 -33.70030 -33.16966 -31.23384 -29.27240 -28.58443 -25.92249 -25.69524 -24.25307 -21.36834 -20.70388 -19.80382 -18.44358 -16.95200 -16.41996 -16.06116 -15.73317 -14.85385 -14.83567 -14.63702 -14.03536 -13.93516 -13.11265 -12.87378 -12.68422 -12.62228 -12.23488 -11.89701 -11.54991 -11.38058 -11.08422 -10.76408 -10.60822 -10.41604 -10.38317 -10.23023 -9.34391 -9.24353 -8.99351 -8.56766 -7.90415 -7.24443 -6.86532 -6.67779 -4.63143 2.24499 2.30004 2.72024 3.01073 3.02654 3.04305 3.80457 4.13388 4.14899 4.64541 4.84759 4.99631 5.24954 5.36899 5.40093 5.53733 5.64783 5.70490 5.85162 5.94151 6.02262 6.18882 6.39570 6.54497 6.70526 6.75512 6.81044 6.95485 6.99522 7.01627 7.25381 7.29490 7.47272 7.61231 7.73103 7.90902 7.98670 8.31742 8.63093 9.01273 9.94766 10.21202 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.008529 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.241627 B = 3282.018020 C = 5187.682059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.077 3.923 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.440 4.440 8 H 0.087 0.913 9 C 0.420 3.580 10 N -0.536 5.536 11 C 0.110 3.890 12 C -0.130 4.130 13 C -0.123 4.123 14 C -0.183 4.183 15 C -0.101 4.101 16 C -0.002 4.002 17 N -0.534 5.534 18 C 0.151 3.849 19 C -0.142 4.142 20 C -0.163 4.163 21 C 0.081 3.919 22 N -0.845 5.845 23 H 0.280 0.720 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.032 0.968 33 H 0.084 0.916 34 H 0.339 0.661 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 -7.425 1.146 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.184 3.816 10 N -0.259 5.259 11 C -0.018 4.018 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.204 4.204 15 C -0.123 4.123 16 C -0.110 4.110 17 N -0.230 5.230 18 C 0.028 3.972 19 C -0.162 4.162 20 C -0.182 4.182 21 C -0.048 4.048 22 N -0.375 5.375 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.634 -5.848 0.924 8.892 hybrid contribution 0.753 -0.976 0.406 1.298 sum 7.387 -6.825 1.330 10.145 Atomic orbital electron populations 1.69966 1.07205 1.28721 1.27873 1.25860 0.94907 1.00775 0.93473 0.86226 0.79892 0.79868 0.79945 1.18814 1.19980 1.18821 1.18480 0.94029 0.87450 1.47785 0.89479 1.20466 0.87204 0.83489 0.90458 1.71400 1.09052 1.12805 1.32684 1.19573 0.92040 0.91528 0.98660 1.19770 0.95015 0.93172 1.07139 1.20205 0.96899 0.93522 1.03777 1.20275 0.91896 0.97714 1.10511 1.19555 0.96933 0.90297 1.05511 1.18863 0.89813 0.91454 1.10848 1.45475 1.03360 1.06265 1.67930 1.20440 0.80625 1.01864 0.94295 1.23276 0.97011 0.97411 0.98475 1.22512 1.01323 0.95779 0.98622 1.20978 0.87762 0.96673 0.99423 1.58714 1.15072 1.53552 1.10112 0.90895 0.87429 0.87859 0.87957 0.88895 0.90265 0.89174 0.86540 0.87460 0.95015 0.89785 0.84937 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.03 11.85 55.57 0.66 -18.37 16 2 C 0.08 1.91 5.50 -17.29 -0.10 1.82 16 3 Si 0.92 17.97 29.56 -169.99 -5.03 12.95 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.44 -11.24 8.99 -38.06 -0.34 -11.58 16 8 H 0.09 2.02 7.10 -52.49 -0.37 1.64 16 9 C 0.42 11.32 7.41 -155.68 -1.15 10.16 16 10 N -0.54 -15.47 9.33 -10.31 -0.10 -15.57 16 11 C 0.11 2.89 7.21 -84.89 -0.61 2.28 16 12 C -0.13 -3.00 10.07 -39.39 -0.40 -3.40 16 13 C -0.12 -2.46 9.96 -39.96 -0.40 -2.86 16 14 C -0.18 -3.53 10.04 -39.38 -0.40 -3.93 16 15 C -0.10 -2.10 10.04 -39.50 -0.40 -2.50 16 16 C 0.00 -0.06 6.88 -83.75 -0.58 -0.64 16 17 N -0.53 -12.56 2.84 -114.77 -0.33 -12.88 16 18 C 0.15 2.80 5.98 -5.20 -0.03 2.77 16 19 C -0.14 -2.40 9.84 -36.02 -0.35 -2.75 16 20 C -0.16 -2.32 9.77 -36.03 -0.35 -2.68 16 21 C 0.08 1.01 6.88 -4.98 -0.03 0.97 16 22 N -0.85 -8.83 9.61 -11.41 -0.11 -8.94 16 23 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 24 H 0.11 2.38 8.06 -52.49 -0.42 1.95 16 25 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 26 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.08 1.32 5.30 -51.93 -0.28 1.04 16 29 H 0.09 1.63 7.32 -51.93 -0.38 1.25 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 1.10 5.30 -51.93 -0.27 0.82 16 34 H 0.34 3.03 8.99 -39.29 -0.35 2.67 16 35 H 0.34 2.85 9.08 -39.29 -0.36 2.50 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -30.55 300.95 -9.61 -40.16 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.11 Total: 10.44 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -5.14 Total: -12.32 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.13 Total: -55.76 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.55 -9.61 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217627606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.732 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds