Wall clock time and date at job start Mon Mar 30 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99798 * 2 1 4 4 H 1.08004 * 119.99879 * 203.27828 * 3 2 1 5 5 C 1.38814 * 120.00233 * 23.28501 * 3 2 1 6 6 N 1.31621 * 119.99770 * 11.63694 * 5 3 2 7 7 Si 1.86798 * 120.00203 * 191.64674 * 5 3 2 8 8 H 1.48495 * 109.47371 * 89.99207 * 7 5 3 9 9 H 1.48501 * 109.47297 * 209.99762 * 7 5 3 10 10 H 1.48500 * 109.46886 * 329.99083 * 7 5 3 11 11 C 1.46499 * 120.00107 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.53471 * 180.02562 * 11 2 1 13 13 C 1.53167 * 109.53580 * 300.16321 * 11 2 1 14 14 C 1.53269 * 109.08089 * 176.77531 * 13 11 2 15 15 O 1.42860 * 109.47050 * 302.49780 * 14 13 11 16 16 C 1.43296 * 113.93381 * 61.52030 * 15 14 13 17 17 C 1.52571 * 109.36652 * 178.67223 * 16 15 14 18 18 C 1.54178 * 112.70528 * 239.91502 * 17 16 15 19 19 S 1.83938 * 102.59047 * 24.48186 * 18 17 16 20 20 C 1.54515 * 108.28913 * 55.99219 * 16 15 14 21 21 C 1.53142 * 109.53881 * 59.84139 * 11 2 1 22 22 H 1.08996 * 109.47722 * 274.04114 * 1 2 3 23 23 H 1.09000 * 109.47066 * 34.03977 * 1 2 3 24 24 H 1.09005 * 109.46949 * 154.03801 * 1 2 3 25 25 H 0.97001 * 120.00100 * 180.02562 * 6 5 3 26 26 H 1.08998 * 109.52354 * 296.75771 * 13 11 2 27 27 H 1.08997 * 109.52427 * 56.94245 * 13 11 2 28 28 H 1.08996 * 109.45422 * 182.49986 * 14 13 11 29 29 H 1.08995 * 109.46280 * 62.50547 * 14 13 11 30 30 H 1.09000 * 108.84612 * 0.76428 * 17 16 15 31 31 H 1.08999 * 108.84495 * 119.21621 * 17 16 15 32 32 H 1.08995 * 110.78737 * 142.75743 * 18 17 16 33 33 H 1.08998 * 110.78665 * 266.21267 * 18 17 16 34 34 H 1.08998 * 110.77508 * 214.42333 * 20 16 15 35 35 H 1.09006 * 110.77699 * 337.84603 * 20 16 15 36 36 H 1.09007 * 109.53726 * 302.65058 * 21 11 2 37 37 H 1.08994 * 109.54239 * 62.90730 * 21 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1637 1.2240 -0.3696 5 6 1.5404 2.3392 0.4752 6 7 0.4027 2.2594 1.1324 7 14 2.3348 4.0041 0.1818 8 1 1.8413 4.5692 -1.0997 9 1 1.9852 4.9226 1.2951 10 1 3.8098 3.8442 0.1169 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0707 0.0009 13 6 1.8255 -2.0744 1.2490 14 6 2.5347 -3.4322 1.1988 15 8 2.1682 -4.1168 -0.0003 16 6 2.5447 -3.4298 -1.2002 17 6 2.1353 -4.2638 -2.4104 18 6 3.3345 -4.6548 -3.2969 19 16 4.7447 -4.5838 -2.1180 20 6 4.0675 -3.1718 -1.1537 21 6 1.8257 -2.0754 -1.2469 22 1 -0.3634 0.0724 1.0250 23 1 -0.3633 0.8516 -0.5753 24 1 -0.3633 -0.9240 -0.4499 25 1 -0.0232 3.0653 1.4641 26 1 2.1386 -1.5305 2.1402 27 1 0.7467 -2.2280 1.2752 28 1 2.2394 -4.0281 2.0623 29 1 3.6137 -3.2791 1.2147 30 1 1.6440 -5.1723 -2.0620 31 1 1.4288 -3.6903 -3.0105 32 1 3.2111 -5.6632 -3.6920 33 1 3.4692 -3.9355 -4.1047 34 1 4.3137 -2.2237 -1.6318 35 1 4.4323 -3.1945 -0.1268 36 1 0.7477 -2.2354 -1.2696 37 1 2.1334 -1.5298 -2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227169742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:29 Heat of formation + Delta-G solvation = -20.509193 kcal Electronic energy + Delta-G solvation = -18354.305095 eV Core-core repulsion = 15644.546508 eV Total energy + Delta-G solvation = -2709.758587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89975 -35.82631 -34.50023 -32.45648 -29.97064 -29.87467 -27.76763 -26.04284 -24.58162 -23.70218 -22.14926 -19.98104 -18.66020 -17.00655 -16.62952 -16.26634 -15.36761 -14.95714 -14.75287 -14.46719 -13.88900 -13.69786 -13.00927 -12.82060 -12.65943 -12.37079 -12.15931 -11.93662 -11.76658 -11.32725 -11.10069 -10.95867 -10.88114 -10.72221 -10.44147 -10.25423 -10.18190 -9.96584 -9.91674 -9.53479 -9.09467 -8.56683 -7.67833 -6.78336 -5.75277 -3.22486 1.88289 2.30076 3.35468 3.41914 3.43052 3.85461 4.42114 4.50654 4.79017 4.90749 4.94983 5.18507 5.25907 5.36136 5.41713 5.44497 5.55267 5.61920 5.71904 5.77457 5.84807 5.87640 6.10043 6.16674 6.22059 6.37083 6.53321 6.72198 6.87551 6.94882 7.36193 7.45618 7.71034 7.77589 8.37010 9.20744 9.83728 10.33476 11.29309 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.005952 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.519439 B = 4703.119450 C = 5015.689585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.178 3.822 12 H 0.062 0.938 13 C -0.167 4.167 14 C 0.057 3.943 15 O -0.369 6.369 16 C 0.123 3.877 17 C -0.115 4.115 18 C -0.062 4.062 19 S -0.307 6.307 20 C -0.092 4.092 21 C -0.151 4.151 22 H 0.028 0.972 23 H 0.042 0.958 24 H -0.002 1.002 25 H 0.252 0.748 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -12.398 -5.366 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.315 5.315 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.069 3.931 12 H 0.080 0.920 13 C -0.207 4.207 14 C -0.020 4.020 15 O -0.289 6.289 16 C 0.081 3.919 17 C -0.154 4.154 18 C -0.210 4.210 19 S -0.080 6.080 20 C -0.240 4.240 21 C -0.192 4.192 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.385 -13.071 -5.194 14.733 hybrid contribution -0.561 1.968 -0.059 2.047 sum 3.824 -11.103 -5.253 12.864 Atomic orbital electron populations 1.20753 0.82712 0.95464 0.99205 1.43926 1.01788 1.00050 1.85772 1.19226 0.98484 0.85600 1.35369 0.91485 1.25037 0.97810 0.98543 0.98144 1.70067 1.18698 1.27226 1.39173 0.86258 0.78816 0.84129 0.77354 1.21489 1.21711 1.20493 1.20354 0.95929 0.86267 0.90552 0.91964 1.22813 1.01364 0.95086 1.01458 1.22752 0.98282 0.94158 0.86797 1.88026 1.80886 1.46885 1.13062 1.22194 0.90887 0.92629 0.86185 1.21966 0.97917 1.01585 0.93948 1.24102 0.93094 1.05230 0.98559 1.87832 1.34506 1.46755 1.38911 1.25126 0.97372 0.97954 1.03498 1.22947 1.01067 0.93705 1.01503 0.95362 0.93955 0.98322 0.93736 0.90918 0.91568 0.89302 0.93268 0.89247 0.89535 0.87774 0.89163 0.88157 0.86776 0.90955 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 7.95 59.85 0.48 4.44 16 2 N -0.59 -14.45 2.82 -173.30 -0.49 -14.93 16 3 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 4 H 0.07 1.76 7.82 -52.48 -0.41 1.35 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -26.17 10.66 55.49 0.59 -25.58 16 7 Si 0.90 21.62 29.57 -169.99 -5.03 16.60 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 C 0.18 3.47 2.40 -67.77 -0.16 3.31 16 12 H 0.06 1.23 6.81 -51.93 -0.35 0.87 16 13 C -0.17 -3.00 5.48 -26.51 -0.15 -3.15 16 14 C 0.06 0.85 6.54 37.30 0.24 1.09 16 15 O -0.37 -5.76 10.08 -35.23 -0.36 -6.12 16 16 C 0.12 1.76 1.01 -89.83 -0.09 1.67 16 17 C -0.12 -1.38 5.84 -26.33 -0.15 -1.54 16 18 C -0.06 -0.66 7.46 37.77 0.28 -0.38 16 19 S -0.31 -4.17 23.26 -107.50 -2.50 -6.67 16 20 C -0.09 -1.28 5.17 37.95 0.20 -1.09 16 21 C -0.15 -2.52 3.74 -26.44 -0.10 -2.62 16 22 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 23 H 0.04 1.11 7.25 -51.93 -0.38 0.73 16 24 H 0.00 -0.04 6.39 -51.93 -0.33 -0.37 16 25 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.26 7.58 -51.93 -0.39 0.86 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.69 5.69 -51.93 -0.30 0.39 16 30 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 31 H 0.09 0.95 7.55 -51.93 -0.39 0.56 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.41 7.64 -51.93 -0.40 1.02 16 35 H 0.11 1.60 5.39 -51.93 -0.28 1.32 16 36 H 0.07 1.26 6.57 -51.92 -0.34 0.92 16 37 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -29.31 290.93 -8.69 -38.00 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.61 Total: -0.35 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.31 Total: -5.33 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.10 Total: -40.51 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.36 Total: -6.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.50 Total: -6.67 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.31 -8.69 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227169742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.491 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds