Wall clock time and date at job start Mon Mar 30 2020 04:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47111 * 240.00344 * 2 1 3 5 5 H 1.09001 * 109.47289 * 64.99993 * 4 2 1 6 6 S 1.81397 * 109.47024 * 184.99869 * 4 2 1 7 7 C 1.50701 * 109.47129 * 304.99724 * 4 2 1 8 8 O 1.21282 * 119.99980 * 325.09088 * 7 4 2 9 9 N 1.34773 * 119.99904 * 145.08739 * 7 4 2 10 10 C 1.46497 * 120.00062 * 185.22578 * 9 7 4 11 11 C 1.50700 * 109.47048 * 90.00471 * 10 9 7 12 12 H 1.08001 * 119.99570 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00381 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99702 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00202 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46766 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47118 * 120.00287 * 15 13 11 18 18 H 1.48501 * 109.46737 * 240.00112 * 15 13 11 19 19 C 1.46502 * 119.99955 * 5.23375 * 9 7 4 20 20 C 1.53003 * 117.49893 * 193.56028 * 19 9 7 21 21 C 1.53002 * 117.50111 * 124.90231 * 19 9 7 22 22 H 1.09003 * 109.46998 * 299.99772 * 1 2 3 23 23 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47008 * 59.99671 * 1 2 3 25 25 H 1.08997 * 109.46766 * 119.99869 * 2 1 3 26 26 H 1.09003 * 109.47118 * 60.00302 * 3 2 1 27 27 H 1.09000 * 109.46906 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47568 * 299.99986 * 3 2 1 29 29 H 1.34503 * 103.00211 * 59.99987 * 6 4 2 30 30 H 1.09005 * 109.47653 * 210.00385 * 10 9 7 31 31 H 1.08996 * 109.47375 * 330.00680 * 10 9 7 32 32 H 0.97006 * 120.00064 * 179.97438 * 14 13 11 33 33 H 1.08994 * 115.55001 * 339.23328 * 19 9 7 34 34 H 1.09005 * 117.49465 * 0.02562 * 20 19 9 35 35 H 1.09005 * 117.49907 * 145.01905 * 20 19 9 36 36 H 1.08998 * 117.50163 * 214.97952 * 21 19 9 37 37 H 1.09003 * 117.49638 * 359.97237 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7517 -0.1582 -2.1370 6 16 3.8479 -0.8513 -1.1766 7 6 1.4392 -2.1018 -1.3128 8 8 1.2357 -2.7222 -0.2907 9 7 1.1279 -2.6470 -2.5054 10 6 0.4397 -3.9389 -2.5629 11 6 -1.0506 -3.7147 -2.5604 12 1 -1.4454 -2.7103 -2.5204 13 6 -1.9099 -4.7918 -2.6091 14 7 -1.4290 -6.0149 -2.6583 15 14 -3.7571 -4.5139 -2.6067 16 1 -4.0383 -3.0570 -2.5472 17 1 -4.3447 -5.0818 -3.8465 18 1 -4.3566 -5.1819 -1.4236 19 6 1.4780 -1.9477 -3.7442 20 6 0.8320 -2.4409 -5.0406 21 6 2.3150 -2.7099 -4.7734 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 4.0554 -1.5577 -0.0510 30 1 0.7266 -4.4633 -3.4744 31 1 0.7184 -4.5380 -1.6960 32 1 -2.0336 -6.7728 -2.6922 33 1 1.6546 -0.8767 -3.6457 34 1 0.1463 -3.2854 -4.9715 35 1 0.5840 -1.6943 -5.7951 36 1 3.0421 -2.1403 -5.3522 37 1 2.6057 -3.7316 -4.5286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232740648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:52 Heat of formation + Delta-G solvation = -14.946290 kcal Electronic energy + Delta-G solvation = -18072.745674 eV Core-core repulsion = 15363.228313 eV Total energy + Delta-G solvation = -2709.517361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59443 -37.05803 -35.44820 -33.24800 -32.05711 -29.01533 -27.00953 -26.66365 -23.10780 -22.07990 -21.74443 -20.32035 -18.25587 -17.77796 -17.05498 -16.45112 -15.52655 -14.89000 -14.67244 -14.36576 -13.87322 -13.71759 -13.60845 -12.68587 -12.41850 -12.00437 -11.99594 -11.82071 -11.60236 -11.37460 -11.03324 -10.96120 -10.86799 -10.65559 -10.60082 -10.55419 -10.26721 -10.15099 -10.02667 -9.53624 -9.10948 -8.48598 -7.90950 -7.56746 -6.08969 -4.13932 1.58359 2.66706 3.26389 3.33737 3.36272 3.44134 3.73861 4.37046 4.46152 4.64072 4.74014 4.96489 5.22851 5.25225 5.33142 5.39489 5.46289 5.55121 5.66275 5.77206 5.95825 6.04203 6.08155 6.13182 6.20961 6.38397 6.47815 6.59586 6.78524 6.98004 7.37454 7.45917 7.87018 8.16952 8.30100 8.80142 8.96386 9.51090 10.98926 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.007425 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.257811 B = 3770.102229 C = 4408.175426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.148 4.148 4 C -0.061 4.061 5 H 0.130 0.870 6 S -0.214 6.214 7 C 0.519 3.481 8 O -0.539 6.539 9 N -0.557 5.557 10 C 0.243 3.757 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.071 3.929 20 C -0.178 4.178 21 C -0.193 4.193 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 12.736 -1.159 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.193 4.193 5 H 0.148 0.852 6 S -0.061 6.061 7 C 0.303 3.697 8 O -0.417 6.417 9 N -0.286 5.286 10 C 0.124 3.876 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.035 4.035 20 C -0.215 4.215 21 C -0.232 4.232 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.962 12.241 -0.804 14.625 hybrid contribution -1.909 -0.499 0.742 2.108 sum 6.053 11.742 -0.062 13.210 Atomic orbital electron populations 1.21923 0.93761 1.03788 1.01519 1.21203 0.97108 0.96091 0.95416 1.21940 1.02236 0.94620 1.01792 1.23512 0.92368 0.98988 1.04438 0.85232 1.86981 1.07580 1.73802 1.37702 1.19839 0.78861 0.86824 0.84201 1.90687 1.54788 1.62715 1.33535 1.47660 1.55272 1.22741 1.02884 1.19349 0.91388 0.78245 0.98574 1.21417 0.90691 0.93118 1.50900 0.92246 1.24929 0.99080 0.94949 0.95105 1.69944 1.35052 0.97989 1.50276 0.86464 0.85158 0.78351 0.77618 1.19714 1.20911 1.20941 1.21542 1.04328 0.95108 0.82496 1.23405 0.95980 1.04727 0.97432 1.23341 0.94349 1.02270 1.03196 0.92426 0.90804 0.92659 0.90626 0.92497 0.91182 0.92488 0.94388 0.94542 0.93810 0.92729 0.86620 0.86248 0.88960 0.88785 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.85 37.16 0.33 -1.95 16 2 C -0.08 -1.10 2.14 -90.62 -0.19 -1.30 16 3 C -0.15 -1.61 9.02 37.16 0.34 -1.27 16 4 C -0.06 -0.94 1.99 -27.88 -0.06 -1.00 16 5 H 0.13 1.76 5.85 -51.92 -0.30 1.45 16 6 S -0.21 -3.05 24.03 -107.50 -2.58 -5.63 16 7 C 0.52 10.64 5.60 -10.99 -0.06 10.58 16 8 O -0.54 -13.24 15.00 5.56 0.08 -13.16 16 9 N -0.56 -11.68 2.81 -167.47 -0.47 -12.15 16 10 C 0.24 6.22 4.47 -5.20 -0.02 6.20 16 11 C -0.52 -14.29 8.92 -34.44 -0.31 -14.60 16 12 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.07 1.18 6.13 -67.93 -0.42 0.77 16 20 C -0.18 -2.88 9.73 -26.69 -0.26 -3.14 16 21 C -0.19 -2.90 10.02 -26.69 -0.27 -3.17 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.41 6.44 -51.93 -0.33 1.08 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.73 7.14 -51.93 -0.37 0.36 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.43 9.07 97.61 0.89 2.31 16 30 H 0.04 0.95 6.25 -51.93 -0.32 0.62 16 31 H 0.04 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.12 1.60 5.89 -51.93 -0.31 1.29 16 34 H 0.12 2.36 6.29 -51.93 -0.33 2.03 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.59 7.83 -51.93 -0.41 1.18 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -30.53 313.40 -7.92 -38.45 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.37 Total: 3.95 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.02 Total: -7.25 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.27 Total: -37.52 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.58 Total: -5.63 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.53 -7.92 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232740648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.503 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds