Wall clock time and date at job start Mon Mar 30 2020 04:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47111 * 240.00344 * 2 1 3 5 5 H 1.09001 * 109.47289 * 64.99993 * 4 2 1 6 6 S 1.81397 * 109.47024 * 184.99869 * 4 2 1 7 7 C 1.50701 * 109.47129 * 304.99724 * 4 2 1 8 8 O 1.21282 * 119.99980 * 325.09088 * 7 4 2 9 9 N 1.34773 * 119.99904 * 145.08739 * 7 4 2 10 10 C 1.46497 * 120.00062 * 185.22578 * 9 7 4 11 11 C 1.50700 * 109.47048 * 90.00471 * 10 9 7 12 12 H 1.08001 * 119.99570 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00381 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99702 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00202 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46766 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47118 * 120.00287 * 15 13 11 18 18 H 1.48501 * 109.46737 * 240.00112 * 15 13 11 19 19 C 1.46502 * 119.99955 * 5.23375 * 9 7 4 20 20 C 1.53003 * 117.49893 * 193.56028 * 19 9 7 21 21 C 1.53002 * 117.50111 * 124.90231 * 19 9 7 22 22 H 1.09003 * 109.46998 * 299.99772 * 1 2 3 23 23 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47008 * 59.99671 * 1 2 3 25 25 H 1.08997 * 109.46766 * 119.99869 * 2 1 3 26 26 H 1.09003 * 109.47118 * 60.00302 * 3 2 1 27 27 H 1.09000 * 109.46906 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47568 * 299.99986 * 3 2 1 29 29 H 1.34503 * 103.00211 * 59.99987 * 6 4 2 30 30 H 1.09005 * 109.47653 * 210.00385 * 10 9 7 31 31 H 1.08996 * 109.47375 * 330.00680 * 10 9 7 32 32 H 0.97006 * 120.00064 * 179.97438 * 14 13 11 33 33 H 1.08994 * 115.55001 * 339.23328 * 19 9 7 34 34 H 1.09005 * 117.49465 * 0.02562 * 20 19 9 35 35 H 1.09005 * 117.49907 * 145.01905 * 20 19 9 36 36 H 1.08998 * 117.50163 * 214.97952 * 21 19 9 37 37 H 1.09003 * 117.49638 * 359.97237 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7517 -0.1582 -2.1370 6 16 3.8479 -0.8513 -1.1766 7 6 1.4392 -2.1018 -1.3128 8 8 1.2357 -2.7222 -0.2907 9 7 1.1279 -2.6470 -2.5054 10 6 0.4397 -3.9389 -2.5629 11 6 -1.0506 -3.7147 -2.5604 12 1 -1.4454 -2.7103 -2.5204 13 6 -1.9099 -4.7918 -2.6091 14 7 -1.4290 -6.0149 -2.6583 15 14 -3.7571 -4.5139 -2.6067 16 1 -4.0383 -3.0570 -2.5472 17 1 -4.3447 -5.0818 -3.8465 18 1 -4.3566 -5.1819 -1.4236 19 6 1.4780 -1.9477 -3.7442 20 6 0.8320 -2.4409 -5.0406 21 6 2.3150 -2.7099 -4.7734 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 4.0554 -1.5577 -0.0510 30 1 0.7266 -4.4633 -3.4744 31 1 0.7184 -4.5380 -1.6960 32 1 -2.0336 -6.7728 -2.6922 33 1 1.6546 -0.8767 -3.6457 34 1 0.1463 -3.2854 -4.9715 35 1 0.5840 -1.6943 -5.7951 36 1 3.0421 -2.1403 -5.3522 37 1 2.6057 -3.7316 -4.5286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232740648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:51 Heat of formation + Delta-G solvation = -33.570813 kcal Electronic energy + Delta-G solvation = -18073.553294 eV Core-core repulsion = 15363.228313 eV Total energy + Delta-G solvation = -2710.324981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18043 -38.49840 -36.73354 -35.22057 -33.83468 -30.64802 -28.40670 -28.04216 -25.05928 -23.48599 -23.05094 -21.57150 -19.77239 -19.04569 -18.57468 -18.48255 -17.20434 -16.43576 -16.23478 -15.81690 -15.27838 -15.18136 -14.91327 -14.46916 -13.63784 -13.58842 -13.39301 -13.23033 -12.98407 -12.79135 -12.68974 -12.61339 -12.27643 -12.20763 -12.12336 -12.06826 -11.75535 -11.52828 -11.46143 -11.27299 -10.67802 -10.66737 -9.28968 -9.05650 -8.23749 -6.38067 0.33598 1.34872 1.36758 1.38592 1.48744 1.87300 2.19581 2.38206 3.05566 3.12596 3.31693 3.52457 3.77036 3.96824 4.08526 4.21156 4.27928 4.37259 4.55652 4.79932 4.82437 4.91103 4.95906 5.03097 5.08056 5.12374 5.19798 5.27040 5.33092 5.45372 5.49581 5.53451 5.77892 6.02676 6.62850 6.72619 7.20630 7.36196 8.83470 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.007425 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.257811 B = 3770.102229 C = 4408.175426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.056 4.056 5 H 0.158 0.842 6 S -0.172 6.172 7 C 0.510 3.490 8 O -0.592 6.592 9 N -0.565 5.565 10 C 0.263 3.737 11 C -0.529 4.529 12 H 0.056 0.944 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.285 1.285 19 C 0.053 3.947 20 C -0.180 4.180 21 C -0.176 4.176 22 H 0.075 0.925 23 H 0.023 0.977 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.026 0.974 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.156 0.844 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 15.999 -2.509 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.196 4.196 4 C -0.188 4.188 5 H 0.176 0.824 6 S -0.018 6.018 7 C 0.296 3.704 8 O -0.474 6.474 9 N -0.293 5.293 10 C 0.142 3.858 11 C -0.567 4.567 12 H 0.074 0.926 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.789 3.211 16 H -0.187 1.187 17 H -0.195 1.195 18 H -0.211 1.211 19 C -0.050 4.050 20 C -0.218 4.218 21 C -0.214 4.214 22 H 0.094 0.906 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.010 0.990 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.238 15.540 -2.188 17.724 hybrid contribution -1.925 -1.564 1.158 2.737 sum 6.314 13.976 -1.029 15.370 Atomic orbital electron populations 1.21884 0.94570 1.00945 1.03284 1.21231 0.96423 0.98174 0.93808 1.21891 1.02559 0.91746 1.03443 1.23508 0.93505 0.95322 1.06425 0.82426 1.86792 1.05283 1.73071 1.36613 1.20788 0.77989 0.88532 0.83060 1.90653 1.56844 1.64604 1.35343 1.47643 1.54897 1.21588 1.05159 1.18726 0.91290 0.80279 0.95500 1.21612 0.91655 0.92964 1.50501 0.92561 1.25833 1.04046 0.94620 0.94610 1.70068 1.36833 0.98910 1.51217 0.85404 0.79161 0.78665 0.77861 1.18719 1.19491 1.21079 1.22057 1.05520 0.96752 0.80708 1.23364 0.96003 1.04245 0.98167 1.23396 0.94541 1.01320 1.02152 0.90598 0.95789 0.90994 0.92857 0.91155 0.90556 0.90590 0.96344 0.95623 0.99030 0.92498 0.82690 0.90593 0.85196 0.84489 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 8.85 71.98 0.64 -3.70 16 2 C -0.08 -2.04 2.14 -10.79 -0.02 -2.06 16 3 C -0.14 -2.50 9.02 71.98 0.65 -1.85 16 4 C -0.06 -1.63 1.99 29.85 0.06 -1.57 16 5 H 0.16 3.66 5.85 -2.39 -0.01 3.64 16 6 S -0.17 -4.53 24.03 -56.49 -1.36 -5.88 16 7 C 0.51 21.37 5.60 87.66 0.49 21.87 16 8 O -0.59 -30.88 15.00 -3.04 -0.05 -30.93 16 9 N -0.56 -24.21 2.81 -802.15 -2.25 -26.46 16 10 C 0.26 14.25 4.47 85.63 0.38 14.64 16 11 C -0.53 -30.03 8.92 25.60 0.23 -29.80 16 12 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 15 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 C 0.05 1.68 6.13 44.99 0.28 1.95 16 20 C -0.18 -5.55 9.73 30.62 0.30 -5.25 16 21 C -0.18 -4.92 10.02 30.62 0.31 -4.61 16 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.02 0.92 6.44 -2.39 -0.02 0.91 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.67 8.02 -2.39 -0.02 1.65 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.30 7.14 -2.39 -0.02 1.29 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 2.23 9.07 73.35 0.67 2.89 16 30 H 0.03 1.43 6.25 -2.38 -0.01 1.41 16 31 H -0.01 -0.54 7.36 -2.39 -0.02 -0.55 16 32 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 33 H 0.16 3.60 5.89 -2.39 -0.01 3.59 16 34 H 0.08 3.06 6.29 -2.38 -0.02 3.05 16 35 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 36 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.34 7.83 -2.39 -0.02 2.32 16 Total: -1.00 -71.77 313.40 4.16 -67.61 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.73 Total: 14.59 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 3.77 Total: -9.49 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -1.97 Total: -82.62 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -1.36 Total: -5.88 kcal Total: -71.77 4.16 -67.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232740648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.040 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds