Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.53005 * 109.46898 * 119.99850 * 2 1 3 5 5 H 1.08995 * 109.47075 * 53.78773 * 4 2 1 6 6 S 1.81392 * 109.47236 * 293.78230 * 4 2 1 7 7 C 1.50696 * 109.46597 * 173.78118 * 4 2 1 8 8 O 1.21284 * 119.99899 * 93.82045 * 7 4 2 9 9 N 1.34779 * 120.00437 * 273.82207 * 7 4 2 10 10 C 1.46501 * 119.99881 * 7.95514 * 9 7 4 11 11 C 1.50696 * 109.46707 * 90.00296 * 10 9 7 12 12 H 1.07997 * 120.00249 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99927 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00135 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99831 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47298 * 89.99820 * 15 13 11 17 17 H 1.48503 * 109.46935 * 210.00456 * 15 13 11 18 18 H 1.48503 * 109.47140 * 329.99918 * 15 13 11 19 19 C 1.46497 * 119.99985 * 187.96220 * 9 7 4 20 20 C 1.53000 * 117.49955 * 15.32866 * 19 9 7 21 21 C 1.52999 * 117.50075 * 306.66545 * 19 9 7 22 22 H 1.09000 * 109.47419 * 299.99576 * 1 2 3 23 23 H 1.09000 * 109.47251 * 60.00397 * 1 2 3 24 24 H 1.09005 * 109.46666 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46797 * 240.00100 * 2 1 3 26 26 H 1.09003 * 109.46762 * 63.29492 * 3 2 1 27 27 H 1.08993 * 109.46897 * 183.29646 * 3 2 1 28 28 H 1.09001 * 109.46797 * 303.29885 * 3 2 1 29 29 H 1.34504 * 103.00149 * 300.00132 * 6 4 2 30 30 H 1.08998 * 109.47151 * 210.00369 * 10 9 7 31 31 H 1.09003 * 109.46852 * 330.00369 * 10 9 7 32 32 H 0.97002 * 120.00022 * 180.02562 * 14 13 11 33 33 H 1.09000 * 115.54907 * 161.00180 * 19 9 7 34 34 H 1.08991 * 117.50173 * 0.02562 * 20 19 9 35 35 H 1.09001 * 117.49802 * 145.02397 * 20 19 9 36 36 H 1.08999 * 117.50246 * 214.98268 * 21 19 9 37 37 H 1.09003 * 117.49598 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5887 -1.7117 1.3067 6 16 1.5913 0.2341 2.7245 7 6 3.5391 -0.8559 1.1747 8 8 4.2495 -0.0216 1.6947 9 7 4.0905 -1.9033 0.5302 10 6 3.2444 -2.8145 -0.2446 11 6 3.1408 -2.3188 -1.6639 12 1 3.6534 -1.4153 -1.9592 13 6 2.3905 -3.0183 -2.5854 14 7 2.3005 -2.5861 -3.8241 15 14 1.5021 -4.5799 -2.0741 16 1 0.1390 -4.2391 -1.5933 17 1 1.4017 -5.4961 -3.2385 18 1 2.2593 -5.2460 -0.9840 19 6 5.5358 -2.1308 0.6045 20 6 6.3129 -1.3873 1.6927 21 6 6.4544 -0.9668 0.2277 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.7257 1.9390 0.9181 27 1 3.1284 1.4430 -0.0591 28 1 1.6292 1.9731 -0.8590 29 1 2.2067 1.4126 2.5206 30 1 3.6843 -3.8117 -0.2392 31 1 2.2500 -2.8535 0.2002 32 1 1.7724 -3.0780 -4.4723 33 1 5.8671 -3.1369 0.3476 34 1 5.7488 -0.7293 2.3536 35 1 7.1558 -1.9042 2.1515 36 1 7.3903 -1.2071 -0.2767 37 1 5.9834 -0.0319 -0.0760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232774371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = -14.091934 kcal Electronic energy + Delta-G solvation = -18526.995668 eV Core-core repulsion = 15817.515354 eV Total energy + Delta-G solvation = -2709.480313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51124 -37.84240 -36.99027 -35.56650 -34.16610 -29.84383 -29.17062 -28.19177 -24.50186 -23.75247 -23.26905 -21.80123 -20.08326 -19.05299 -18.43808 -18.03354 -17.10481 -16.51430 -16.18343 -15.99073 -15.37222 -15.26821 -14.71611 -14.44430 -14.20418 -13.95499 -13.69448 -13.19843 -13.00128 -12.98936 -12.64953 -12.39462 -12.32791 -12.03877 -12.01567 -11.81574 -11.67462 -11.53896 -11.28823 -11.19421 -10.71817 -10.43917 -9.26471 -8.95381 -8.25638 -6.31675 0.57063 1.43709 1.45915 1.52173 1.54085 1.60367 2.22059 2.37691 3.02981 3.08191 3.39957 3.67848 3.85781 3.98452 4.11729 4.16214 4.17959 4.35057 4.55581 4.64584 4.76285 4.80635 4.81444 4.85833 4.91106 4.92879 5.07141 5.17039 5.35856 5.37048 5.44083 5.52384 5.81535 6.18286 6.52646 6.71748 7.13812 7.32630 8.89876 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.010509 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.189325 B = 2663.782839 C = 3645.598253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.053 4.053 5 H 0.142 0.858 6 S -0.189 6.189 7 C 0.520 3.480 8 O -0.568 6.568 9 N -0.564 5.564 10 C 0.213 3.787 11 C -0.528 4.528 12 H 0.030 0.970 13 C 0.027 3.973 14 N -0.938 5.938 15 Si 0.930 3.070 16 H -0.257 1.257 17 H -0.290 1.290 18 H -0.238 1.238 19 C 0.067 3.933 20 C -0.179 4.179 21 C -0.192 4.192 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.144 0.856 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -0.136 10.189 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C -0.209 4.209 4 C -0.185 4.185 5 H 0.159 0.841 6 S -0.036 6.036 7 C 0.307 3.693 8 O -0.450 6.450 9 N -0.291 5.291 10 C 0.091 3.909 11 C -0.566 4.566 12 H 0.048 0.952 13 C -0.172 4.172 14 N -0.577 5.577 15 Si 0.752 3.248 16 H -0.181 1.181 17 H -0.216 1.216 18 H -0.161 1.161 19 C -0.037 4.037 20 C -0.216 4.216 21 C -0.231 4.231 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.353 0.492 11.086 11.179 hybrid contribution 0.604 -0.002 -1.781 1.881 sum -0.749 0.490 9.305 9.348 Atomic orbital electron populations 1.21812 0.91974 1.02724 1.02860 1.21406 0.98552 0.95624 0.96385 1.22062 0.99638 0.96540 1.02617 1.23490 0.94811 1.03556 0.96626 0.84056 1.86587 1.68128 1.18014 1.30835 1.20575 0.90586 0.80714 0.77424 1.90492 1.62948 1.41493 1.50081 1.47289 1.07004 1.27292 1.47534 1.19818 0.91131 0.90071 0.89850 1.21278 1.30943 1.10346 0.94073 0.95181 1.25660 0.96650 1.00630 0.94307 1.70040 1.41567 1.41509 1.04608 0.85979 0.80420 0.79408 0.78963 1.18123 1.21625 1.16079 1.21902 0.78678 0.97680 1.05449 1.23730 1.01929 1.03479 0.92488 1.23096 1.01635 0.98926 0.99402 0.90124 0.92286 0.92145 0.88909 0.91825 0.95325 0.91226 0.94686 0.93110 0.93126 0.92353 0.83816 0.86920 0.86566 0.87049 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.03 71.98 0.65 -3.33 16 2 C -0.10 -3.49 2.62 -10.79 -0.03 -3.52 16 3 C -0.15 -5.17 8.52 71.98 0.61 -4.55 16 4 C -0.05 -1.80 1.93 29.85 0.06 -1.74 16 5 H 0.14 4.49 6.25 -2.39 -0.01 4.47 16 6 S -0.19 -5.73 22.61 -56.49 -1.28 -7.01 16 7 C 0.52 20.18 5.84 87.66 0.51 20.69 16 8 O -0.57 -23.49 11.30 -3.04 -0.03 -23.53 16 9 N -0.56 -22.02 2.82 -802.15 -2.26 -24.29 16 10 C 0.21 8.62 4.03 85.63 0.34 8.96 16 11 C -0.53 -26.45 7.64 25.60 0.20 -26.26 16 12 H 0.03 1.78 8.02 -2.91 -0.02 1.76 16 13 C 0.03 1.39 5.47 84.66 0.46 1.85 16 14 N -0.94 -53.39 13.96 21.45 0.30 -53.09 16 15 Si 0.93 37.57 27.47 68.60 1.88 39.45 16 16 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 17 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.24 -8.56 6.54 99.48 0.65 -7.91 16 19 C 0.07 2.36 6.61 44.99 0.30 2.66 16 20 C -0.18 -5.67 9.62 30.62 0.29 -5.38 16 21 C -0.19 -6.71 9.89 30.62 0.30 -6.41 16 22 H 0.08 2.07 7.19 -2.39 -0.02 2.05 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.09 4.04 5.40 -2.39 -0.01 4.03 16 26 H 0.06 1.96 5.57 -2.39 -0.01 1.95 16 27 H 0.03 1.11 7.15 -2.39 -0.02 1.09 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.09 2.89 7.04 73.35 0.52 3.41 16 30 H 0.05 1.95 7.10 -2.39 -0.02 1.93 16 31 H 0.05 1.89 5.22 -2.39 -0.01 1.88 16 32 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.14 4.40 8.10 -2.39 -0.02 4.38 16 34 H 0.11 4.14 5.22 -4.96 -0.03 4.12 16 35 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.06 2.50 7.62 -2.39 -0.02 2.48 16 Total: -1.00 -58.86 299.01 3.84 -55.02 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 1.52 Total: 30.46 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 3.70 Total: -17.03 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -1.96 Total: -77.37 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.03 Total: -23.53 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 1.88 Total: 39.45 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -1.28 Total: -7.01 kcal Total: -58.86 3.84 -55.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232774371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.931 kcal (2) G-P(sol) polarization free energy of solvation -58.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds