Wall clock time and date at job start Mon Mar 30 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08999 * 110.86766 * 300.98010 * 9 7 2 11 11 C 1.54920 * 110.97748 * 177.16615 * 9 7 2 12 12 O 1.44235 * 103.05571 * 206.36707 * 11 9 7 13 13 C 1.43366 * 107.30877 * 21.38235 * 12 11 9 14 14 H 1.09001 * 109.63305 * 240.82509 * 13 12 11 15 15 C 1.52995 * 109.63112 * 120.58461 * 13 12 11 16 16 C 1.52992 * 109.47244 * 65.63686 * 15 13 12 17 17 N 1.46902 * 109.47370 * 179.97438 * 16 15 13 18 18 C 1.47021 * 110.99994 * 293.63574 * 17 16 15 19 19 C 1.53098 * 109.25923 * 177.60419 * 18 17 16 20 20 O 1.43019 * 109.25724 * 56.84894 * 19 18 17 21 21 C 1.43022 * 113.73832 * 301.32985 * 20 19 18 22 22 C 1.47016 * 111.00539 * 170.00009 * 17 16 15 23 23 O 1.43757 * 108.79232 * 0.70368 * 13 12 11 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.08996 * 110.69536 * 324.73507 * 11 9 7 26 26 H 1.09005 * 110.69047 * 87.93558 * 11 9 7 27 27 H 1.09002 * 109.47128 * 185.63577 * 15 13 12 28 28 H 1.08999 * 109.47043 * 305.63437 * 15 13 12 29 29 H 1.08995 * 109.47801 * 299.99849 * 16 15 13 30 30 H 1.09008 * 109.47240 * 60.00129 * 16 15 13 31 31 H 1.09000 * 109.50424 * 297.54072 * 18 17 16 32 32 H 1.09005 * 109.50389 * 57.67126 * 18 17 16 33 33 H 1.09000 * 109.50588 * 296.91459 * 19 18 17 34 34 H 1.08992 * 109.54148 * 176.80817 * 19 18 17 35 35 H 1.08998 * 109.50234 * 298.73501 * 21 20 19 36 36 H 1.09001 * 109.53909 * 178.62824 * 21 20 19 37 37 H 1.08999 * 109.50197 * 302.32903 * 22 17 16 38 38 H 1.09001 * 109.50267 * 62.45831 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6068 -2.5714 0.8815 11 6 2.2248 -3.7019 -0.0679 12 8 1.4227 -4.7336 -0.6783 13 6 0.3499 -4.0846 -1.3735 14 1 -0.6045 -4.4085 -0.9585 15 6 0.4089 -4.4435 -2.8596 16 6 0.1373 -5.9390 -3.0342 17 7 0.1933 -6.2835 -4.4612 18 6 -0.9062 -5.6464 -5.2006 19 6 -0.7755 -5.9824 -6.6885 20 8 -0.7647 -7.4031 -6.8521 21 6 0.2938 -8.0560 -6.1459 22 6 0.1739 -7.7411 -4.6525 23 8 0.4881 -2.6625 -1.2142 24 1 -0.4850 0.8400 0.0004 25 1 3.0855 -3.4632 -0.6926 26 1 2.5433 -4.0009 0.9308 27 1 -0.3444 -3.8717 -3.4017 28 1 1.3976 -4.2055 -3.2519 29 1 0.8904 -6.5108 -2.4923 30 1 -0.8515 -6.1770 -2.6419 31 1 -1.8600 -6.0180 -4.8259 32 1 -0.8574 -4.5659 -5.0657 33 1 0.1537 -5.5643 -7.0757 34 1 -1.6196 -5.5596 -7.2332 35 1 1.2540 -7.6982 -6.5174 36 1 0.2232 -9.1331 -6.2976 37 1 1.0111 -8.1894 -4.1176 38 1 -0.7627 -8.1460 -4.2692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258425445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:31 Heat of formation + Delta-G solvation = -133.448541 kcal Electronic energy + Delta-G solvation = -19694.336102 eV Core-core repulsion = 16536.927227 eV Total energy + Delta-G solvation = -3157.408875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68985 -39.05024 -36.12587 -33.90832 -32.77393 -31.75972 -31.18915 -28.84635 -26.86613 -24.80274 -24.12198 -23.11423 -21.45072 -20.57523 -20.18323 -16.93117 -16.66288 -16.43802 -16.18007 -15.27317 -15.18603 -15.12890 -14.83449 -14.55303 -14.04620 -13.88146 -13.37146 -13.13298 -12.48302 -12.27746 -12.00420 -11.92882 -11.80593 -11.50532 -11.37450 -11.04219 -10.94176 -10.75565 -10.58479 -10.44127 -10.14014 -9.78058 -9.37053 -8.95680 -8.71424 -8.41744 -8.34135 -6.17152 -4.32325 3.25528 3.30290 3.32544 3.63582 3.79810 4.29850 4.54091 4.74922 4.88484 4.92001 5.00906 5.04855 5.15918 5.34219 5.34895 5.43531 5.50500 5.60257 5.66647 5.74135 5.80640 5.84757 5.91871 6.08893 6.17195 6.25703 6.31735 6.47025 6.61648 6.88182 6.92370 6.99144 7.03031 7.32859 7.72866 8.04348 8.37513 8.76949 9.39871 10.91049 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.035248 B = 0.004170 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.185173 B = 6712.710025 C = 7145.283323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.079 3.921 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.184 3.816 10 H 0.041 0.959 11 C 0.025 3.975 12 O -0.407 6.407 13 C 0.225 3.775 14 H 0.058 0.942 15 C -0.122 4.122 16 C 0.064 3.936 17 N -0.537 5.537 18 C 0.012 3.988 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.064 3.936 22 C 0.017 3.983 23 O -0.360 6.360 24 H 0.265 0.735 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -12.520 -8.846 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.129 3.871 10 H 0.059 0.941 11 C -0.051 4.051 12 O -0.329 6.329 13 C 0.128 3.872 14 H 0.075 0.925 15 C -0.161 4.161 16 C -0.063 4.063 17 N -0.262 5.262 18 C -0.116 4.116 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.013 4.013 22 C -0.111 4.111 23 O -0.281 6.281 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.661 -12.382 -9.276 15.485 hybrid contribution -0.195 0.787 0.651 1.040 sum -0.856 -11.594 -8.625 14.476 Atomic orbital electron populations 1.70012 1.06199 1.27237 1.46392 1.25089 0.94859 0.99652 0.93224 0.86542 0.79622 0.82269 0.78903 1.19854 1.21018 1.19877 1.20824 0.92844 0.89236 1.54415 0.91304 1.21463 0.87524 0.93388 0.84688 0.94107 1.24318 0.95537 0.88265 0.96989 1.88682 1.41407 1.32722 1.70054 1.23700 0.89839 0.82695 0.90959 0.92488 1.21898 1.03630 0.94283 0.96242 1.22022 1.00319 0.97306 0.86688 1.62199 1.44618 1.08255 1.11143 1.22866 0.92718 1.01264 0.94728 1.22681 1.02419 0.81290 0.94906 1.87956 1.51746 1.19802 1.71297 1.22654 0.90866 0.97496 0.90267 1.22770 1.01587 0.89001 0.97727 1.89566 1.75738 1.16740 1.46061 0.92513 0.91882 0.90300 0.90935 0.90392 0.89853 0.94939 0.94026 0.88916 0.92179 0.88512 0.92256 0.88654 0.89571 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.19 13.09 55.43 0.73 -24.46 16 2 C 0.08 2.18 5.44 -17.82 -0.10 2.09 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.78 8.83 -34.44 -0.30 -15.08 16 8 H 0.07 1.81 7.78 -52.49 -0.41 1.40 16 9 C 0.18 4.77 3.29 -26.87 -0.09 4.69 16 10 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 11 C 0.03 0.54 7.52 38.17 0.29 0.83 16 12 O -0.41 -8.57 10.79 -59.04 -0.64 -9.21 16 13 C 0.23 4.75 4.01 37.15 0.15 4.90 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.12 -2.17 5.24 -26.74 -0.14 -2.31 16 16 C 0.06 0.95 4.86 -3.83 -0.02 0.93 16 17 N -0.54 -7.20 4.73 -234.30 -1.11 -8.30 16 18 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 19 C 0.06 0.70 7.01 37.21 0.26 0.96 16 20 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 21 C 0.06 0.66 7.01 37.21 0.26 0.92 16 22 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 23 O -0.36 -9.44 10.81 -59.04 -0.64 -10.08 16 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.06 1.35 8.02 -51.93 -0.42 0.94 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.07 1.26 6.51 -51.93 -0.34 0.92 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 30 H 0.03 0.47 8.12 -51.92 -0.42 0.05 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -30.61 307.78 -8.25 -38.87 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.10 Total: -0.42 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 0.27 Total: -1.77 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: -0.38 Total: -32.77 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.66 Total: -24.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.61 -8.25 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258425445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.581 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds