Wall clock time and date at job start Mon Mar 30 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47343 * 2 1 4 4 H 1.09002 * 109.47350 * 305.55791 * 3 2 1 5 5 C 1.50707 * 109.46722 * 65.55188 * 3 2 1 6 6 H 1.07995 * 119.99985 * 28.11270 * 5 3 2 7 7 C 1.37882 * 120.00031 * 208.10775 * 5 3 2 8 8 N 1.31513 * 119.99698 * 353.21452 * 7 5 3 9 9 Si 1.86792 * 119.99936 * 173.21689 * 7 5 3 10 10 H 1.48497 * 109.47289 * 269.99838 * 9 7 5 11 11 H 1.48499 * 109.47213 * 149.99783 * 9 7 5 12 12 H 1.48503 * 109.47131 * 29.99891 * 9 7 5 13 13 C 1.52999 * 109.47380 * 185.54926 * 3 2 1 14 14 N 1.46498 * 109.46533 * 65.00292 * 13 3 2 15 15 C 1.34776 * 119.99560 * 179.97438 * 14 13 3 16 16 O 1.21280 * 120.00458 * 359.97438 * 15 14 13 17 17 C 1.50709 * 119.99904 * 180.02562 * 15 14 13 18 18 H 1.08996 * 110.35896 * 334.13226 * 17 15 14 19 19 C 1.54269 * 110.40134 * 211.68320 * 17 15 14 20 20 C 1.53862 * 108.92650 * 213.25857 * 19 17 15 21 21 C 1.55129 * 106.90080 * 47.25069 * 20 19 17 22 22 S 1.83095 * 110.39953 * 96.45354 * 17 15 14 23 23 H 1.09006 * 109.46755 * 54.78604 * 1 2 3 24 24 H 1.08993 * 109.47269 * 174.78597 * 1 2 3 25 25 H 1.09001 * 109.46845 * 294.79001 * 1 2 3 26 26 H 1.09000 * 109.46839 * 240.00596 * 2 1 3 27 27 H 1.09000 * 109.47193 * 120.00267 * 2 1 3 28 28 H 0.96999 * 120.00494 * 354.40436 * 8 7 5 29 29 H 1.08998 * 109.47334 * 185.00349 * 13 3 2 30 30 H 1.09001 * 109.47131 * 305.00565 * 13 3 2 31 31 H 0.96996 * 120.00477 * 0.02562 * 14 13 3 32 32 H 1.09000 * 109.61116 * 333.17283 * 19 17 15 33 33 H 1.08998 * 109.61173 * 93.33544 * 19 17 15 34 34 H 1.09006 * 109.96551 * 287.89341 * 20 19 17 35 35 H 1.08995 * 109.97392 * 166.62067 * 20 19 17 36 36 H 1.08999 * 110.85658 * 199.70960 * 21 20 19 37 37 H 1.09004 * 110.85530 * 76.06416 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5978 1.9843 -0.8360 5 6 1.6531 2.1121 1.2935 6 1 1.5261 1.5229 2.1896 7 6 1.4612 3.4769 1.3329 8 7 1.7443 4.2113 0.2792 9 14 0.7994 4.2827 2.8826 10 1 -0.6838 4.3260 2.8234 11 1 1.3312 5.6652 2.9875 12 1 1.2247 3.4974 4.0692 13 6 3.5637 1.4447 -0.1395 14 7 3.9349 0.9024 -1.4488 15 6 5.2339 0.8081 -1.7954 16 8 6.0955 1.1725 -1.0236 17 6 5.6158 0.2507 -3.1425 18 1 4.8398 -0.4214 -3.5086 19 6 6.9699 -0.4833 -3.0566 20 6 7.7195 -0.3054 -4.3885 21 6 7.6397 1.2003 -4.7532 22 16 5.9000 1.6084 -4.3376 23 1 -0.3633 0.5926 -0.8397 24 1 -0.3633 -1.0233 -0.0934 25 1 -0.3633 0.4309 0.9330 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 2.1634 3.8061 -0.4960 29 1 3.9352 2.4656 -0.0504 30 1 4.0014 0.8289 0.6462 31 1 3.2458 0.6120 -2.0666 32 1 7.5629 -0.0631 -2.2443 33 1 6.8000 -1.5439 -2.8713 34 1 7.2434 -0.9026 -5.1662 35 1 8.7607 -0.6059 -4.2727 36 1 7.8311 1.3530 -5.8153 37 1 8.3311 1.7840 -4.1453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:56 Heat of formation + Delta-G solvation = -88.664427 kcal Electronic energy + Delta-G solvation = -17304.838240 eV Core-core repulsion = 14592.124221 eV Total energy + Delta-G solvation = -2712.714019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91522 -38.06368 -36.62575 -35.03804 -33.69693 -31.40261 -29.56054 -26.93511 -25.86514 -24.22611 -22.41248 -21.64831 -21.43832 -19.13202 -18.36442 -17.87166 -16.88301 -16.48854 -16.05946 -15.70754 -15.60425 -15.21486 -14.96263 -14.52749 -14.10352 -13.90867 -13.67001 -13.53373 -13.07307 -12.70647 -12.66941 -12.55565 -12.43802 -12.02180 -11.92356 -11.84753 -11.71896 -11.33775 -11.24766 -11.01824 -10.59344 -10.49616 -10.08918 -8.86465 -8.59643 -6.32869 0.33236 1.24278 1.53167 1.60962 1.77999 1.88852 2.12522 2.58413 3.19964 3.41691 3.60723 3.75403 3.95719 4.07256 4.14047 4.29687 4.34515 4.44095 4.61337 4.63246 4.64629 4.78513 4.86470 4.92110 4.93067 5.05681 5.15398 5.18087 5.31452 5.43338 5.50497 5.66163 6.09596 6.23583 6.47327 6.64789 7.14539 7.46614 8.78123 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.004888 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.931763 B = 5727.465760 C = 6120.558847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C 0.021 3.979 4 H 0.016 0.984 5 C -0.591 4.591 6 H 0.049 0.951 7 C -0.028 4.028 8 N -0.936 5.936 9 Si 1.109 2.891 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.271 1.271 13 C 0.144 3.856 14 N -0.708 5.708 15 C 0.516 3.484 16 O -0.581 6.581 17 C -0.058 4.058 18 H 0.143 0.857 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.066 4.066 22 S -0.314 6.314 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.258 0.742 29 H 0.016 0.984 30 H 0.042 0.958 31 H 0.408 0.592 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -12.682 -10.902 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C 0.002 3.998 4 H 0.034 0.966 5 C -0.630 4.630 6 H 0.067 0.933 7 C -0.227 4.227 8 N -0.573 5.573 9 Si 0.932 3.068 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.196 1.196 13 C 0.019 3.981 14 N -0.359 5.359 15 C 0.300 3.700 16 O -0.462 6.462 17 C -0.189 4.189 18 H 0.161 0.839 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.213 4.213 22 S -0.088 6.088 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.244 0.756 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.378 -10.112 -10.119 16.096 hybrid contribution 0.876 -1.757 -0.266 1.981 sum 8.254 -11.869 -10.386 17.801 Atomic orbital electron populations 1.21557 0.95497 1.00603 1.01137 1.21424 0.96536 0.95702 1.00132 1.19150 0.89062 0.94810 0.96780 0.96568 1.22153 1.50112 0.94631 0.96086 0.93290 1.27135 0.95261 0.95757 1.04564 1.70877 1.40813 1.39528 1.06126 0.83028 0.76844 0.74920 0.72005 1.19636 1.21735 1.19620 1.21568 0.98727 0.95262 0.82495 1.46216 1.07129 1.63434 1.19126 1.20732 0.82613 0.78199 0.88409 1.90639 1.50259 1.51020 1.54267 1.23916 1.04798 0.97872 0.92298 0.83929 1.22413 0.91311 1.02082 1.00221 1.22568 1.03161 0.93353 0.95997 1.24518 0.90827 0.99803 1.06159 1.88061 1.21640 1.45486 1.53600 0.94251 0.91528 0.93879 0.92153 0.93557 0.93158 0.96575 0.93913 0.75599 0.91424 0.87091 0.88103 0.86949 0.85129 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.65 71.98 0.69 -3.94 16 2 C -0.10 -3.81 5.32 30.60 0.16 -3.65 16 3 C 0.02 1.00 1.43 -11.54 -0.02 0.99 16 4 H 0.02 0.84 7.01 -2.39 -0.02 0.82 16 5 C -0.59 -32.00 7.41 25.60 0.19 -31.82 16 6 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 7 C -0.03 -1.60 5.45 84.66 0.46 -1.14 16 8 N -0.94 -57.37 13.55 21.45 0.29 -57.08 16 9 Si 1.11 50.45 29.91 68.60 2.05 52.50 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.14 6.76 4.92 86.38 0.42 7.18 16 14 N -0.71 -26.72 5.23 -463.06 -2.42 -29.14 16 15 C 0.52 19.03 6.98 87.66 0.61 19.65 16 16 O -0.58 -26.45 15.77 -3.03 -0.05 -26.50 16 17 C -0.06 -1.49 3.65 30.28 0.11 -1.38 16 18 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 19 C -0.12 -2.44 5.90 31.32 0.18 -2.26 16 20 C -0.11 -1.51 6.46 31.61 0.20 -1.30 16 21 C -0.07 -1.17 7.38 72.71 0.54 -0.63 16 22 S -0.31 -8.70 22.68 -56.49 -1.28 -9.99 16 23 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.04 1.68 7.57 -2.39 -0.02 1.66 16 26 H 0.06 1.92 7.06 -2.39 -0.02 1.90 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.26 16.04 6.41 -92.71 -0.59 15.45 16 29 H 0.02 0.89 7.73 -2.39 -0.02 0.87 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.41 12.97 7.65 -92.71 -0.71 12.27 16 32 H 0.07 1.77 6.91 -2.39 -0.02 1.75 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -71.38 312.57 2.67 -68.71 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.51 Total: 19.79 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 3.56 Total: -18.30 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.13 Total: -86.22 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.28 Total: -9.99 kcal Total: -71.38 2.67 -68.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.950 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds