Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46498 * 2 1 4 4 C 1.50701 * 109.47103 * 119.99318 * 2 1 3 5 5 O 1.21274 * 119.99910 * 252.71973 * 4 2 1 6 6 N 1.34773 * 119.99721 * 72.72689 * 4 2 1 7 7 C 1.46390 * 119.72778 * 4.68700 * 6 4 2 8 8 C 1.53488 * 115.16201 * 222.42812 * 7 6 4 9 9 S 1.79944 * 110.98731 * 43.32452 * 8 7 6 10 10 C 1.82222 * 103.24572 * 275.93237 * 9 8 7 11 11 C 1.45824 * 112.64897 * 73.94633 * 10 9 8 12 12 C 1.44682 * 119.72345 * 184.96365 * 6 4 2 13 13 H 1.08998 * 109.47621 * 201.46211 * 12 6 4 14 14 C 1.50696 * 109.48109 * 321.47943 * 12 6 4 15 15 H 1.08005 * 119.99280 * 359.97438 * 14 12 6 16 16 C 1.37874 * 120.00168 * 180.02562 * 14 12 6 17 17 N 1.31508 * 119.99946 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99952 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46961 * 90.00030 * 18 16 14 20 20 H 1.48500 * 109.47105 * 209.99851 * 18 16 14 21 21 H 1.48502 * 109.46985 * 330.00208 * 18 16 14 22 22 H 1.08996 * 109.47172 * 292.84756 * 1 2 3 23 23 H 1.09000 * 109.47281 * 52.85854 * 1 2 3 24 24 H 1.09012 * 109.46561 * 172.85216 * 1 2 3 25 25 H 1.08991 * 109.47618 * 239.99875 * 2 1 3 26 26 H 1.09000 * 109.46699 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47094 * 299.99605 * 3 2 1 28 28 H 1.08991 * 109.47288 * 59.99673 * 3 2 1 29 29 H 1.08995 * 108.38873 * 343.96838 * 7 6 4 30 30 H 1.09002 * 108.38616 * 101.13259 * 7 6 4 31 31 H 1.09004 * 109.28276 * 282.90655 * 8 7 6 32 32 H 1.08997 * 109.11611 * 163.63555 * 8 7 6 33 33 H 1.08999 * 108.84443 * 313.12990 * 10 9 8 34 34 H 1.09004 * 108.84706 * 194.76357 * 10 9 8 35 35 H 1.09001 * 108.71541 * 173.88540 * 11 10 9 36 36 H 1.08998 * 108.62303 * 55.78615 * 11 10 9 37 37 H 0.97009 * 120.00124 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.5286 -0.0755 2.1369 6 7 1.9302 -2.0509 1.3236 7 6 1.4256 -2.8212 0.1857 8 6 0.4392 -3.9418 0.5421 9 16 -0.7570 -3.3827 1.7646 10 6 0.1185 -3.6211 3.3449 11 6 1.1606 -2.6252 3.5653 12 6 2.3145 -2.7162 2.5496 13 1 2.5337 -3.7634 2.3414 14 6 3.5400 -2.0501 3.1200 15 1 3.9848 -1.2091 2.6087 16 6 4.0938 -2.5148 4.2940 17 7 3.5530 -3.5397 4.9157 18 14 5.6134 -1.6894 5.0007 19 1 5.2016 -0.5967 5.9182 20 1 6.4162 -2.6889 5.7502 21 1 6.4301 -1.1265 3.8956 22 1 -0.3633 0.3990 0.9470 23 1 -0.3634 0.6205 -0.8192 24 1 -0.3633 -1.0198 -0.1279 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 0.9319 -2.1350 -0.5023 30 1 2.2752 -3.2676 -0.3312 31 1 0.9902 -4.7921 0.9441 32 1 -0.0893 -4.2522 -0.3592 33 1 0.5719 -4.6123 3.3501 34 1 -0.6032 -3.5619 4.1597 35 1 1.5659 -2.7592 4.5682 36 1 0.7137 -1.6333 3.4990 37 1 3.9425 -3.8664 5.7419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259809666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = -30.851633 kcal Electronic energy + Delta-G solvation = -18763.374248 eV Core-core repulsion = 16053.167179 eV Total energy + Delta-G solvation = -2710.207068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53924 -35.91666 -34.42981 -33.03696 -31.70408 -30.21994 -27.18456 -26.69932 -23.69807 -23.05905 -22.22813 -20.30324 -17.92618 -17.19349 -15.99141 -15.51365 -15.35078 -14.64627 -14.44210 -14.08972 -13.83818 -13.64037 -12.93661 -12.67780 -12.47265 -12.31820 -12.01666 -11.68518 -11.61125 -11.40315 -11.12133 -10.85019 -10.81186 -10.72027 -10.54682 -10.25319 -10.12226 -10.04706 -9.46990 -9.11438 -8.42889 -8.04549 -7.43466 -7.18041 -5.98274 -3.96570 2.26681 3.07352 3.37642 3.43207 3.48891 3.62086 4.02555 4.52592 5.00578 5.10236 5.22887 5.30386 5.32508 5.42256 5.61862 5.70889 5.84433 5.88242 5.88672 5.96854 6.00633 6.10171 6.15814 6.21466 6.55162 6.57755 6.62131 6.84560 7.03989 7.18756 7.75358 7.78718 8.08693 8.16614 8.65682 9.12163 9.28506 9.68007 11.08527 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.010491 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.574790 B = 2668.406488 C = 3757.948580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.129 4.129 4 C 0.514 3.486 5 O -0.508 6.508 6 N -0.590 5.590 7 C 0.106 3.894 8 C -0.095 4.095 9 S -0.289 6.289 10 C -0.048 4.048 11 C -0.136 4.136 12 C 0.276 3.724 13 H 0.035 0.965 14 C -0.490 4.490 15 H 0.083 0.917 16 C 0.053 3.947 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.276 1.276 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 0.789 -10.185 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C -0.187 4.187 4 C 0.300 3.700 5 O -0.382 6.382 6 N -0.323 5.323 7 C -0.021 4.021 8 C -0.245 4.245 9 S -0.063 6.063 10 C -0.195 4.195 11 C -0.176 4.176 12 C 0.174 3.826 13 H 0.053 0.947 14 C -0.528 4.528 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.545 5.545 18 Si 0.729 3.271 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.201 1.201 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.544 1.385 -9.686 12.355 hybrid contribution 1.896 -0.333 0.642 2.029 sum -5.648 1.052 -9.044 10.714 Atomic orbital electron populations 1.21798 0.93194 1.02591 1.02155 1.21374 0.97459 0.97625 0.97843 1.21573 1.01314 0.94332 1.01438 1.20183 0.79278 0.82232 0.88265 1.90714 1.42021 1.65182 1.40316 1.47613 1.63273 1.06034 1.15357 1.21564 0.96338 0.94348 0.89807 1.23591 0.98897 1.01121 1.00846 1.86118 1.26735 1.88223 1.05220 1.22297 1.00495 1.03705 0.93023 1.21058 0.94832 0.95972 1.05744 1.18624 0.92221 0.92863 0.78858 0.94700 1.21621 1.08606 1.15032 1.07561 0.89919 1.24898 0.97649 0.95087 0.97017 1.69880 1.40939 1.25414 1.18288 0.86442 0.82722 0.78891 0.79004 1.20800 1.21674 1.20099 0.92136 0.92579 0.91454 0.90120 0.92508 0.92986 0.91854 0.90224 0.92488 0.89746 0.87714 0.90665 0.89736 0.87021 0.93728 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.87 37.16 0.33 -1.58 16 2 C -0.12 -1.88 2.39 -91.77 -0.22 -2.10 16 3 C -0.13 -1.90 8.57 37.16 0.32 -1.58 16 4 C 0.51 10.72 6.21 -10.99 -0.07 10.65 16 5 O -0.51 -12.87 12.86 5.56 0.07 -12.79 16 6 N -0.59 -12.04 2.33 -167.96 -0.39 -12.44 16 7 C 0.11 1.66 5.39 -3.85 -0.02 1.64 16 8 C -0.10 -1.38 5.90 37.41 0.22 -1.16 16 9 S -0.29 -4.88 21.62 -107.50 -2.32 -7.20 16 10 C -0.05 -0.93 5.79 33.76 0.20 -0.74 16 11 C -0.14 -3.16 4.62 -29.61 -0.14 -3.29 16 12 C 0.28 6.67 1.81 -69.54 -0.13 6.54 16 13 H 0.04 0.90 7.52 -51.93 -0.39 0.51 16 14 C -0.49 -13.63 7.26 -34.44 -0.25 -13.88 16 15 H 0.08 2.44 5.58 -52.48 -0.29 2.15 16 16 C 0.05 1.47 5.16 -17.82 -0.09 1.38 16 17 N -0.90 -25.30 11.41 55.43 0.63 -24.66 16 18 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.91 6.19 -51.92 -0.32 0.59 16 25 H 0.08 1.09 7.15 -51.93 -0.37 0.72 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 29 H 0.08 1.07 4.11 -51.93 -0.21 0.85 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.28 7.91 -51.79 -0.41 0.87 16 32 H 0.10 1.20 8.14 -51.80 -0.42 0.78 16 33 H 0.07 1.48 8.11 -51.92 -0.42 1.06 16 34 H 0.08 1.54 8.14 -51.92 -0.42 1.11 16 35 H 0.11 2.96 5.79 -51.93 -0.30 2.66 16 36 H 0.04 1.10 7.82 -51.93 -0.41 0.69 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -30.16 294.47 -8.08 -38.23 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.63 Total: 1.11 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 0.15 Total: -4.13 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.24 Total: -37.10 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.32 Total: -7.20 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.16 -8.08 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.381 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds