Wall clock time and date at job start Mon Mar 30 2020 04:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 119.99636 * 2 1 4 4 C 1.52998 * 109.47146 * 269.99493 * 3 2 1 5 5 C 1.50697 * 109.47363 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00092 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00360 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99735 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46973 * 90.00898 * 9 7 5 11 11 H 1.48502 * 109.46880 * 210.00245 * 9 7 5 12 12 H 1.48494 * 109.47351 * 330.00389 * 9 7 5 13 13 C 1.34769 * 119.99737 * 179.97438 * 2 1 3 14 14 O 1.21280 * 119.99962 * 184.29801 * 13 2 1 15 15 C 1.50706 * 120.00416 * 4.29329 * 13 2 1 16 16 C 1.52583 * 109.22815 * 207.27476 * 15 13 2 17 17 C 1.53094 * 109.95290 * 169.00574 * 16 15 13 18 18 S 1.81743 * 108.84499 * 63.02553 * 17 16 15 19 19 C 1.81747 * 102.21828 * 306.73102 * 18 17 16 20 20 C 1.52587 * 109.22345 * 86.03467 * 15 13 2 21 21 H 1.08993 * 109.47525 * 272.10113 * 1 2 3 22 22 H 1.09005 * 109.47156 * 32.10363 * 1 2 3 23 23 H 1.09003 * 109.47449 * 152.10118 * 1 2 3 24 24 H 1.08996 * 109.48004 * 29.99841 * 3 2 1 25 25 H 1.09004 * 109.46736 * 150.00081 * 3 2 1 26 26 H 1.09007 * 109.47267 * 300.00727 * 4 3 2 27 27 H 1.08998 * 109.46939 * 60.00216 * 4 3 2 28 28 H 0.97002 * 120.00503 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.18430 * 326.65531 * 15 13 2 30 30 H 1.09005 * 109.38786 * 289.15356 * 16 15 13 31 31 H 1.08996 * 109.38893 * 48.85508 * 16 15 13 32 32 H 1.09005 * 109.57731 * 303.21127 * 17 16 15 33 33 H 1.09005 * 109.56938 * 182.83005 * 17 16 15 34 34 H 1.09000 * 109.57711 * 293.45564 * 19 18 17 35 35 H 1.09007 * 109.57619 * 173.07121 * 19 18 17 36 36 H 1.08998 * 109.38879 * 311.14704 * 20 15 13 37 37 H 1.08998 * 109.38695 * 70.85327 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2065 3.0151 -1.4425 6 1 3.4763 3.4829 -0.5073 7 6 3.5509 3.6124 -2.6366 8 7 4.2084 4.7513 -2.6367 9 14 3.0834 2.8036 -4.2543 10 1 1.7471 3.2895 -4.6827 11 1 4.0907 3.1487 -5.2895 12 1 3.0409 1.3299 -4.0769 13 6 2.1388 -1.1672 0.0005 14 8 3.3491 -1.1687 0.0792 15 6 1.3885 -2.4705 -0.0966 16 6 2.2030 -3.5707 0.5776 17 6 1.3494 -4.8321 0.7329 18 16 0.8956 -5.4407 -0.9184 19 6 0.1577 -3.9660 -1.6826 20 6 1.1454 -2.8020 -1.5661 21 1 -0.3634 0.0377 1.0269 22 1 -0.3634 0.8706 -0.5462 23 1 -0.3634 -0.9082 -0.4809 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1384 0.5139 26 1 3.0416 0.9506 -1.9563 27 1 1.5001 1.8406 -1.9563 28 1 4.4510 5.1713 -3.4768 29 1 0.4297 -2.3707 0.4123 30 1 3.0777 -3.7983 -0.0316 31 1 2.5273 -3.2299 1.5608 32 1 0.4464 -4.5951 1.2957 33 1 1.9203 -5.5967 1.2598 34 1 -0.7684 -3.7121 -1.1670 35 1 -0.0501 -4.1647 -2.7340 36 1 0.7354 -1.9275 -2.0712 37 1 2.0892 -3.0799 -2.0352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259830828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:23 Heat of formation + Delta-G solvation = -51.647841 kcal Electronic energy + Delta-G solvation = -17612.679807 eV Core-core repulsion = 14901.570947 eV Total energy + Delta-G solvation = -2711.108860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06201 -36.49887 -35.49087 -33.05973 -31.78482 -30.66454 -28.09625 -26.74132 -24.79349 -23.30045 -21.81011 -20.53581 -18.77773 -17.31610 -16.95220 -16.84002 -15.54927 -15.31417 -14.68322 -14.21751 -14.04100 -13.99315 -13.64915 -13.23192 -13.00966 -12.94615 -12.64562 -12.45978 -12.41293 -12.20922 -11.68088 -11.59491 -11.14362 -10.97443 -10.62605 -10.48924 -10.07473 -9.99179 -9.87547 -9.42622 -9.20648 -8.57133 -8.20793 -7.90720 -6.07690 -4.06458 1.53301 2.28658 2.84768 3.27185 3.30931 3.35979 3.40750 4.35603 4.40511 4.42588 4.59369 4.69584 4.87590 4.95733 5.09898 5.19981 5.20780 5.26509 5.35013 5.42266 5.46538 5.61644 5.72371 5.73243 5.94827 5.98297 6.07885 6.33600 6.61336 6.70618 7.17704 7.33427 7.70879 7.77581 8.44897 8.50237 8.95713 9.54253 11.05550 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.030876 B = 0.005062 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.641251 B = 5529.764363 C = 5875.899121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.124 3.876 4 C -0.022 4.022 5 C -0.520 4.520 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.514 3.486 14 O -0.533 6.533 15 C -0.114 4.114 16 C -0.104 4.104 17 C -0.078 4.078 18 S -0.272 6.272 19 C -0.076 4.076 20 C -0.114 4.114 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.019 0.981 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 -18.014 5.202 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C 0.004 3.996 4 C -0.060 4.060 5 C -0.559 4.559 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.409 6.409 15 C -0.136 4.136 16 C -0.143 4.143 17 C -0.226 4.226 18 S -0.046 6.046 19 C -0.224 4.224 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.038 0.962 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.018 -18.882 4.704 22.362 hybrid contribution -0.551 1.021 -0.459 1.248 sum -11.569 -17.861 4.245 21.700 Atomic orbital electron populations 1.21812 0.80513 1.03102 1.01420 1.48116 1.06690 1.07138 1.72787 1.21666 0.96343 0.81446 1.00185 1.19856 0.96462 0.97367 0.92314 1.20968 1.35862 1.04369 0.94691 0.90831 1.24973 0.94502 0.94596 0.99089 1.69901 1.39706 1.17398 1.26966 0.86781 0.78328 0.80536 0.83685 1.20314 1.21232 1.19108 1.20340 0.87972 0.84913 0.76717 1.90711 1.13962 1.87168 1.49063 1.21334 1.00265 0.94029 0.97960 1.21550 0.98391 0.92112 1.02294 1.23476 1.02915 1.00898 0.95292 1.86895 1.80025 1.20952 1.16759 1.23444 1.00169 0.94663 1.04129 1.21669 1.00709 0.98116 0.94836 0.92888 0.90600 0.91527 0.91207 0.90254 0.96218 0.97155 0.92642 0.89175 0.89435 0.90217 0.89839 0.87478 0.89669 0.87372 0.89985 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.00 59.85 0.60 1.46 16 2 N -0.61 -10.05 2.87 -181.57 -0.52 -10.58 16 3 C 0.12 2.52 5.39 -4.05 -0.02 2.49 16 4 C -0.02 -0.53 4.36 -27.89 -0.12 -0.65 16 5 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 6 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 13 C 0.51 8.56 6.66 -10.99 -0.07 8.49 16 14 O -0.53 -11.24 15.85 5.56 0.09 -11.15 16 15 C -0.11 -1.34 1.45 -92.19 -0.13 -1.47 16 16 C -0.10 -1.16 4.46 -26.90 -0.12 -1.28 16 17 C -0.08 -0.68 6.45 37.21 0.24 -0.44 16 18 S -0.27 -2.79 22.33 -107.50 -2.40 -5.19 16 19 C -0.08 -0.67 6.45 37.21 0.24 -0.43 16 20 C -0.11 -1.26 4.72 -26.89 -0.13 -1.39 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 23 H 0.07 0.60 5.47 -51.93 -0.28 0.32 16 24 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 25 H 0.08 1.76 7.37 -51.93 -0.38 1.38 16 26 H 0.02 0.51 7.20 -51.92 -0.37 0.14 16 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.09 0.85 6.50 -51.93 -0.34 0.51 16 30 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 31 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.08 0.92 7.53 -51.93 -0.39 0.53 16 37 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -33.42 307.32 -8.00 -41.43 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.96 Total: -2.80 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.05 Total: -6.54 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.25 Total: -37.74 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.40 Total: -5.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.42 -8.00 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259830828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.222 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds