Wall clock time and date at job start Mon Mar 30 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46932 * 2 1 4 4 C 1.52995 * 109.46781 * 119.99804 * 2 1 3 5 5 H 1.09001 * 109.47273 * 54.64128 * 4 2 1 6 6 C 1.50704 * 109.46687 * 174.63646 * 4 2 1 7 7 H 1.08002 * 119.99908 * 114.70173 * 6 4 2 8 8 C 1.37874 * 120.00117 * 294.70050 * 6 4 2 9 9 N 1.31516 * 119.99873 * 353.51523 * 8 6 4 10 10 Si 1.86798 * 120.00372 * 173.51519 * 8 6 4 11 11 H 1.48507 * 109.46847 * 59.99760 * 10 8 6 12 12 H 1.48503 * 109.47423 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46879 * 300.00164 * 10 8 6 14 14 N 1.46499 * 109.47233 * 294.63533 * 4 2 1 15 15 C 1.34769 * 120.00182 * 85.00466 * 14 4 2 16 16 O 1.21280 * 119.99918 * 359.97438 * 15 14 4 17 17 C 1.50696 * 120.00129 * 179.97438 * 15 14 4 18 18 H 1.09002 * 108.83232 * 59.29644 * 17 15 14 19 19 C 1.52332 * 108.86953 * 177.82889 * 17 15 14 20 20 C 1.54256 * 112.59200 * 120.81785 * 19 17 15 21 21 S 1.83961 * 102.57944 * 24.53028 * 20 19 17 22 22 C 1.54256 * 108.87058 * 300.76714 * 17 15 14 23 23 H 1.09000 * 109.47264 * 66.63602 * 1 2 3 24 24 H 1.09005 * 109.47110 * 306.64491 * 1 2 3 25 25 H 1.08997 * 109.47261 * 186.63826 * 1 2 3 26 26 H 1.08996 * 109.46946 * 240.00130 * 2 1 3 27 27 H 1.08994 * 109.47890 * 60.00007 * 3 2 1 28 28 H 1.09001 * 109.46802 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47251 * 299.99335 * 3 2 1 30 30 H 0.97001 * 119.99959 * 180.02562 * 9 8 6 31 31 H 0.97006 * 119.99689 * 265.00166 * 14 4 2 32 32 H 1.09005 * 108.87183 * 241.63999 * 19 17 15 33 33 H 1.08999 * 108.86774 * 0.14372 * 19 17 15 34 34 H 1.09001 * 110.79168 * 142.79962 * 20 19 17 35 35 H 1.08997 * 110.78920 * 266.25916 * 20 19 17 36 36 H 1.09004 * 110.78538 * 332.92311 * 22 17 15 37 37 H 1.08996 * 110.79207 * 96.37678 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6003 -1.7174 1.2986 6 6 3.5411 -0.8372 1.1846 7 1 4.1544 -0.3177 1.9060 8 6 4.1315 -1.6067 0.2047 9 7 3.3866 -2.3401 -0.5934 10 14 5.9894 -1.6075 0.0104 11 1 6.6183 -2.0842 1.2685 12 1 6.3701 -2.5101 -1.1057 13 1 6.4567 -0.2293 -0.2854 14 7 1.6598 0.0400 2.4419 15 6 0.4433 -0.1363 2.9945 16 8 -0.3370 -0.9247 2.5041 17 6 0.0526 0.6463 4.2216 18 1 0.1044 1.7105 3.9915 19 6 -1.3810 0.2924 4.5958 20 6 -1.4945 -0.2952 6.0175 21 16 -0.0064 0.3901 6.8543 22 6 1.0523 0.3314 5.3534 23 1 -0.3634 0.4075 -0.9434 24 1 -0.3633 0.6134 0.8246 25 1 -0.3633 -1.0207 0.1188 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 3.8020 -2.8818 -1.2826 31 1 2.2839 0.6708 2.8339 32 1 -1.9933 1.1923 4.5364 33 1 -1.7610 -0.4393 3.8829 34 1 -2.4060 0.0486 6.5066 35 1 -1.4560 -1.3841 5.9903 36 1 1.4844 -0.6608 5.2229 37 1 1.8326 1.0908 5.4027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259894741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:12 Heat of formation + Delta-G solvation = -57.412509 kcal Electronic energy + Delta-G solvation = -18069.385718 eV Core-core repulsion = 15358.026884 eV Total energy + Delta-G solvation = -2711.358834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58407 -36.27346 -34.83609 -32.47438 -32.04954 -29.68960 -27.04044 -26.10447 -25.44593 -23.10370 -21.52171 -19.36935 -18.54685 -17.50859 -16.50634 -16.05771 -15.44342 -15.05052 -14.49849 -14.22665 -13.87362 -13.49791 -13.16821 -12.58061 -12.53845 -12.43431 -11.94072 -11.69306 -11.55445 -11.39160 -11.16881 -11.01496 -10.95859 -10.81180 -10.37625 -10.26682 -10.06419 -9.98490 -9.62515 -9.09323 -8.92858 -8.53526 -7.87064 -7.75498 -6.17341 -4.23318 1.86092 2.24140 3.22837 3.26866 3.29191 3.30415 3.96969 4.33797 4.57867 4.84674 4.91979 5.10152 5.16111 5.16801 5.44515 5.55708 5.66072 5.83656 6.03726 6.15696 6.19383 6.24865 6.29540 6.51299 6.72884 6.86990 7.01660 7.25157 7.36481 7.39176 7.56406 7.66872 7.78901 8.05934 8.59959 8.74302 9.05549 9.42444 10.90390 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.006032 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.410905 B = 4640.943541 C = 5205.452910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.127 4.127 4 C 0.275 3.725 5 H 0.054 0.946 6 C -0.532 4.532 7 H 0.060 0.940 8 C 0.070 3.930 9 N -0.881 5.881 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 N -0.702 5.702 15 C 0.505 3.495 16 O -0.543 6.543 17 C -0.114 4.114 18 H 0.101 0.899 19 C -0.125 4.125 20 C -0.058 4.058 21 S -0.310 6.310 22 C -0.053 4.053 23 H 0.024 0.976 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 6.761 8.347 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 C -0.185 4.185 4 C 0.173 3.827 5 H 0.072 0.928 6 C -0.571 4.571 7 H 0.078 0.922 8 C -0.134 4.134 9 N -0.517 5.517 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 N -0.348 5.348 15 C 0.288 3.712 16 O -0.422 6.422 17 C -0.138 4.138 18 H 0.120 0.880 19 C -0.164 4.164 20 C -0.206 4.206 21 S -0.083 6.083 22 C -0.201 4.201 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.983 6.410 8.970 12.544 hybrid contribution 1.190 -0.007 -1.125 1.638 sum -4.793 6.403 7.844 11.203 Atomic orbital electron populations 1.21867 0.97562 1.01251 0.98175 1.21461 0.92735 0.95347 1.02364 1.21654 1.01481 0.96967 0.98382 1.18798 0.94432 0.90869 0.78560 0.92779 1.21090 0.90519 1.30775 1.14691 0.92220 1.24855 0.98282 0.94536 0.95706 1.69945 1.35396 1.26708 1.19686 0.86609 0.85250 0.78056 0.77826 1.20227 1.21168 1.20106 1.46431 1.14305 1.43279 1.30819 1.20159 0.82986 0.83447 0.84634 1.90630 1.50878 1.37326 1.63373 1.21881 0.94923 1.02225 0.94735 0.88049 1.21999 0.95097 1.03158 0.96188 1.24154 0.97037 1.03102 0.96340 1.87825 1.13715 1.85328 1.21469 1.24111 0.98708 1.06306 0.90972 0.95738 0.94518 0.92713 0.89178 0.94826 0.92276 0.95442 0.92502 0.77976 0.90705 0.87415 0.87917 0.89160 0.88456 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 7.68 37.16 0.29 -2.48 16 2 C -0.10 -2.22 2.63 -90.62 -0.24 -2.46 16 3 C -0.13 -2.50 8.79 37.16 0.33 -2.17 16 4 C 0.28 6.45 1.80 -69.08 -0.12 6.33 16 5 H 0.05 1.52 7.55 -51.93 -0.39 1.12 16 6 C -0.53 -13.26 7.67 -34.44 -0.26 -13.53 16 7 H 0.06 1.43 7.73 -52.49 -0.41 1.02 16 8 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 9 N -0.88 -24.12 12.00 55.43 0.67 -23.45 16 10 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 N -0.70 -13.24 3.93 -54.94 -0.22 -13.46 16 15 C 0.50 9.04 5.60 -10.99 -0.06 8.97 16 16 O -0.54 -11.59 12.06 5.56 0.07 -11.53 16 17 C -0.11 -1.54 2.98 -91.46 -0.27 -1.81 16 18 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.13 -1.58 5.94 -26.42 -0.16 -1.73 16 20 C -0.06 -0.67 7.46 37.81 0.28 -0.39 16 21 S -0.31 -4.00 23.26 -107.50 -2.50 -6.50 16 22 C -0.05 -0.67 6.67 37.81 0.25 -0.41 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.74 6.24 -51.93 -0.32 0.41 16 25 H 0.05 1.25 7.49 -51.93 -0.39 0.86 16 26 H 0.09 2.30 6.66 -51.93 -0.35 1.96 16 27 H 0.03 0.59 7.47 -51.93 -0.39 0.21 16 28 H 0.06 1.21 7.39 -51.93 -0.38 0.83 16 29 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.41 8.39 -40.82 -0.34 6.06 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.59 6.12 -51.93 -0.32 1.28 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.37 7.85 -51.93 -0.41 0.96 16 37 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -27.94 302.73 -8.30 -36.24 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.79 Total: 7.03 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.07 Total: -7.96 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.45 Total: -36.91 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.50 Total: -6.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.94 -8.30 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.169 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds