Wall clock time and date at job start Mon Mar 30 2020 04:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47128 * 2 1 4 4 C 1.52994 * 109.47235 * 119.99919 * 2 1 3 5 5 C 1.50697 * 109.47236 * 175.00364 * 4 2 1 6 6 O 1.21280 * 120.00031 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00236 * 180.02562 * 5 4 2 8 8 C 1.46381 * 119.64606 * 5.92975 * 7 5 4 9 9 C 1.53235 * 109.48770 * 114.63581 * 8 7 5 10 10 S 1.81738 * 108.79686 * 57.65854 * 9 8 7 11 11 C 1.81748 * 102.30699 * 305.45846 * 10 9 8 12 12 C 1.46379 * 119.64839 * 185.66452 * 7 5 4 13 13 H 1.08997 * 109.47055 * 125.35968 * 12 7 5 14 14 C 1.50699 * 109.46706 * 5.36509 * 12 7 5 15 15 H 1.07995 * 120.00001 * 21.44273 * 14 12 7 16 16 C 1.37877 * 119.99825 * 201.44297 * 14 12 7 17 17 N 1.31515 * 120.00012 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 120.00138 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47052 * 89.99822 * 18 16 14 20 20 H 1.48493 * 109.47030 * 210.00116 * 18 16 14 21 21 H 1.48502 * 109.46773 * 330.00279 * 18 16 14 22 22 H 1.08996 * 109.47128 * 299.99652 * 1 2 3 23 23 H 1.09001 * 109.46749 * 60.00186 * 1 2 3 24 24 H 1.08995 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47509 * 240.00013 * 2 1 3 26 26 H 1.09002 * 109.47067 * 300.00349 * 3 2 1 27 27 H 1.08999 * 109.46915 * 59.99649 * 3 2 1 28 28 H 1.08998 * 109.47256 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47303 * 54.99996 * 4 2 1 30 30 H 1.09007 * 109.46964 * 294.99937 * 4 2 1 31 31 H 1.08996 * 109.46903 * 234.64127 * 8 7 5 32 32 H 1.09000 * 109.46513 * 354.63329 * 8 7 5 33 33 H 1.08997 * 109.58632 * 177.45199 * 9 8 7 34 34 H 1.08996 * 109.58511 * 297.72883 * 9 8 7 35 35 H 1.09006 * 109.58143 * 174.33394 * 11 10 9 36 36 H 1.09003 * 109.58227 * 294.60672 * 11 10 9 37 37 H 0.97003 * 120.00336 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1889 6 8 4.1450 -0.3746 0.2399 7 7 4.2149 -1.4320 2.1890 8 6 3.4743 -2.0931 3.2647 9 6 3.7448 -3.6007 3.2201 10 16 5.5347 -3.8791 3.3665 11 6 6.1975 -2.8560 2.0185 12 6 5.6787 -1.4237 2.1849 13 1 6.0423 -1.0126 3.1266 14 6 6.1728 -0.5746 1.0421 15 1 5.5265 0.1724 0.6056 16 6 7.4501 -0.7514 0.5539 17 7 7.8812 -0.0108 -0.4437 18 14 8.5678 -2.0440 1.3086 19 1 8.3841 -3.3341 0.5963 20 1 9.9820 -1.6079 1.1861 21 1 8.2257 -2.2176 2.7432 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6054 -1.7197 1.2952 30 1 1.7517 -0.1582 2.1370 31 1 3.7972 -1.6944 4.2264 32 1 2.4073 -1.9115 3.1360 33 1 3.2303 -4.0889 4.0477 34 1 3.3857 -4.0085 2.2752 35 1 7.2867 -2.8572 2.0605 36 1 5.8684 -3.2570 1.0598 37 1 8.7799 -0.1349 -0.7869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259937090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:04 Heat of formation + Delta-G solvation = 3.109083 kcal Electronic energy + Delta-G solvation = -18450.958644 eV Core-core repulsion = 15742.224223 eV Total energy + Delta-G solvation = -2708.734421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21263 -37.76394 -36.32854 -35.19286 -32.95760 -31.19561 -28.95331 -27.88178 -27.15114 -24.40540 -23.86248 -21.21951 -19.89494 -19.45755 -18.20741 -17.30096 -17.15178 -16.32787 -16.08452 -15.82018 -15.53546 -15.10323 -14.73816 -14.59899 -14.12768 -14.02614 -13.61882 -13.36883 -13.06734 -12.93804 -12.84536 -12.76296 -12.70330 -12.42124 -11.87683 -11.74173 -11.50079 -11.48830 -10.93854 -10.78051 -10.73820 -9.68510 -9.25684 -8.66175 -8.07963 -6.15460 0.71408 1.12970 1.17638 1.32204 1.50316 1.96973 2.23852 2.27046 3.10213 3.68606 3.82105 3.89285 3.95799 4.08903 4.15972 4.19629 4.32903 4.37740 4.48139 4.62626 4.75151 4.79174 4.80479 4.89082 4.90506 5.09850 5.12878 5.19017 5.33944 5.40027 5.51781 5.62023 5.70147 6.34944 6.79989 7.13634 7.35721 7.82058 8.95587 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.009540 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.142531 B = 2934.276486 C = 4165.133387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.151 4.151 4 C -0.128 4.128 5 C 0.484 3.516 6 O -0.525 6.525 7 N -0.617 5.617 8 C 0.100 3.900 9 C -0.083 4.083 10 S -0.301 6.301 11 C -0.121 4.121 12 C 0.256 3.744 13 H 0.040 0.960 14 C -0.524 4.524 15 H 0.126 0.874 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.930 3.070 19 H -0.284 1.284 20 H -0.302 1.302 21 H -0.240 1.240 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.734 -5.449 9.154 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.208 4.208 4 C -0.168 4.168 5 C 0.274 3.726 6 O -0.402 6.402 7 N -0.351 5.351 8 C -0.024 4.024 9 C -0.232 4.232 10 S -0.074 6.074 11 C -0.269 4.269 12 C 0.151 3.849 13 H 0.057 0.943 14 C -0.563 4.563 15 H 0.143 0.857 16 C -0.185 4.185 17 N -0.588 5.588 18 Si 0.764 3.236 19 H -0.212 1.212 20 H -0.231 1.231 21 H -0.167 1.167 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.744 -5.852 9.290 19.195 hybrid contribution 1.029 0.115 -1.167 1.560 sum -14.715 -5.737 8.123 17.761 Atomic orbital electron populations 1.21769 0.92187 1.02680 1.02594 1.20843 0.96929 0.95607 0.96672 1.21905 1.00905 0.96499 1.01512 1.21941 0.89609 1.04095 1.01116 1.21653 0.91219 0.77453 0.82254 1.90664 1.67990 1.47546 1.34009 1.48073 1.06067 1.55923 1.25034 1.22063 0.99176 0.90036 0.91132 1.23983 0.91084 1.00353 1.07776 1.86427 1.10370 1.64540 1.46023 1.25104 1.03419 1.00186 0.98194 1.19068 0.78883 0.89482 0.97503 0.94281 1.23165 0.98772 1.19460 1.14895 0.85732 1.25806 0.98872 0.98023 0.95816 1.69999 1.18316 1.42734 1.27703 0.86311 0.77905 0.79526 0.79906 1.21185 1.23144 1.16741 0.91089 0.92570 0.91345 0.93553 0.92906 0.91827 0.94775 0.86547 0.86779 0.89419 0.84687 0.82889 0.89529 0.89353 0.91894 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.08 -2.15 2.57 -10.79 -0.03 -2.17 16 3 C -0.15 -4.60 8.93 71.98 0.64 -3.96 16 4 C -0.13 -3.10 3.49 29.85 0.10 -3.00 16 5 C 0.48 18.63 7.25 87.66 0.64 19.26 16 6 O -0.53 -27.06 9.50 -3.03 -0.03 -27.08 16 7 N -0.62 -22.73 2.79 -801.69 -2.24 -24.97 16 8 C 0.10 2.31 6.14 86.48 0.53 2.84 16 9 C -0.08 -1.89 6.67 72.06 0.48 -1.41 16 10 S -0.30 -10.28 22.29 -56.49 -1.26 -11.54 16 11 C -0.12 -5.43 4.14 72.06 0.30 -5.13 16 12 C 0.26 12.01 2.65 44.35 0.12 12.12 16 13 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.52 -30.83 7.93 25.60 0.20 -30.63 16 15 H 0.13 8.25 4.65 -98.31 -0.46 7.79 16 16 C 0.01 0.65 5.45 84.65 0.46 1.11 16 17 N -0.94 -62.31 13.96 21.45 0.30 -62.01 16 18 Si 0.93 47.21 24.15 68.60 1.66 48.86 16 19 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 21 H -0.24 -11.20 6.08 99.48 0.60 -10.60 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.03 1.38 5.95 -2.39 -0.01 1.37 16 29 H 0.12 2.05 7.62 -2.39 -0.02 2.03 16 30 H 0.11 2.12 7.92 -2.38 -0.02 2.10 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.14 1.92 5.73 -2.39 -0.01 1.91 16 33 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 4.24 1.16 -2.38 0.00 4.24 16 36 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -78.03 288.10 3.05 -74.98 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.51 Total: 14.39 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 4.11 Total: -12.64 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.94 Total: -86.98 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.03 Total: -27.08 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.66 Total: 48.86 kcal Atomic # 16 Polarization: -10.28 SS G_CDS: -1.26 Total: -11.54 kcal Total: -78.03 3.05 -74.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.091 kcal (2) G-P(sol) polarization free energy of solvation -78.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds