Wall clock time and date at job start Mon Mar 30 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00051 * 2 1 4 4 C 1.53007 * 109.46962 * 270.00052 * 3 2 1 5 5 C 1.50700 * 109.46949 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00074 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99788 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99931 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99952 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46993 * 89.99909 * 9 7 5 11 11 H 1.48497 * 109.47100 * 209.99862 * 9 7 5 12 12 H 1.48498 * 109.46870 * 329.99963 * 9 7 5 13 13 C 1.34778 * 119.99979 * 179.97438 * 2 1 3 14 14 O 1.21273 * 120.00037 * 179.97438 * 13 2 1 15 15 C 1.50700 * 119.99931 * 0.02562 * 13 2 1 16 16 H 1.09002 * 109.39204 * 59.79626 * 15 13 2 17 17 C 1.52575 * 109.39187 * 179.50217 * 15 13 2 18 18 C 1.52580 * 110.73002 * 190.82388 * 17 15 13 19 19 C 1.53099 * 109.95400 * 289.32525 * 18 17 15 20 20 S 1.82094 * 108.89552 * 63.01234 * 19 18 17 21 21 C 1.53098 * 109.38841 * 299.99717 * 15 13 2 22 22 H 1.09002 * 109.46962 * 270.00394 * 1 2 3 23 23 H 1.09005 * 109.47320 * 29.99773 * 1 2 3 24 24 H 1.08998 * 109.47255 * 150.00502 * 1 2 3 25 25 H 1.08991 * 109.47450 * 29.99873 * 3 2 1 26 26 H 1.09000 * 109.47254 * 150.00710 * 3 2 1 27 27 H 1.09000 * 109.46794 * 300.00218 * 4 3 2 28 28 H 1.08997 * 109.46745 * 59.99754 * 4 3 2 29 29 H 0.97010 * 119.99855 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.22946 * 311.14748 * 17 15 13 31 31 H 1.09002 * 109.22829 * 70.49901 * 17 15 13 32 32 H 1.08996 * 109.39045 * 49.46799 * 18 17 15 33 33 H 1.09004 * 109.39255 * 169.17932 * 18 17 15 34 34 H 1.09000 * 109.57606 * 182.82905 * 19 18 17 35 35 H 1.09001 * 109.57620 * 303.21766 * 19 18 17 36 36 H 1.09002 * 109.57593 * 296.63488 * 21 15 13 37 37 H 1.09001 * 109.57569 * 56.89393 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 6 3.2065 3.0152 -1.4426 6 1 3.4772 3.4824 -0.5073 7 6 3.5518 3.6118 -2.6366 8 7 3.2234 3.0420 -3.7755 9 14 4.4871 5.2288 -2.6367 10 1 5.9468 4.9562 -2.6366 11 1 4.1291 6.0077 -3.8492 12 1 4.1289 6.0078 -1.4242 13 6 2.1389 -1.1672 0.0005 14 8 3.3516 -1.1672 0.0001 15 6 1.3853 -2.4723 0.0005 16 1 0.7568 -2.5273 -0.8883 17 6 2.3784 -3.6306 -0.0113 18 6 1.6639 -4.9518 -0.2797 19 6 0.8193 -5.3452 0.9352 20 16 -0.4691 -4.0841 1.1910 21 6 0.5054 -2.5512 1.2509 22 1 -0.3633 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1384 0.5137 27 1 3.0415 0.9507 -1.9564 28 1 1.5000 1.8407 -1.9563 29 1 3.4660 3.4620 -4.6157 30 1 3.1206 -3.4592 -0.7910 31 1 2.8798 -3.6835 0.9551 32 1 1.0170 -4.8431 -1.1501 33 1 2.4023 -5.7296 -0.4742 34 1 0.3518 -6.3135 0.7568 35 1 1.4548 -5.4016 1.8190 36 1 1.1348 -2.5530 2.1409 37 1 -0.1656 -1.6927 1.2800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260013631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:25 Heat of formation + Delta-G solvation = -50.965783 kcal Electronic energy + Delta-G solvation = -17465.941936 eV Core-core repulsion = 14754.862653 eV Total energy + Delta-G solvation = -2711.079283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94033 -36.46577 -35.41400 -33.24152 -31.98463 -29.75405 -27.44244 -26.56490 -25.25989 -23.44949 -21.74130 -20.53308 -18.80965 -17.15468 -16.59378 -16.25348 -15.69352 -15.12311 -14.97804 -14.55574 -14.18370 -13.71339 -13.57303 -13.16252 -12.99944 -12.64274 -12.46322 -12.24646 -11.91708 -11.66754 -11.50613 -11.30589 -11.05887 -10.93376 -10.90436 -10.68680 -9.99944 -9.90970 -9.87770 -9.37106 -9.07449 -8.36352 -8.04085 -7.88538 -6.01611 -4.04785 1.55929 2.25497 3.00538 3.32292 3.37662 3.40092 3.47568 4.45193 4.50247 4.53744 4.60241 4.70097 4.87010 5.01630 5.15037 5.27794 5.34708 5.40557 5.45758 5.51961 5.54008 5.69486 5.73838 5.90963 6.03439 6.11760 6.18722 6.51865 6.83793 6.90088 7.58316 7.70280 7.93320 7.98675 8.35100 8.59763 9.01886 9.59185 11.09876 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.004253 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.204343 B = 6582.706849 C = 6827.937697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.609 5.609 3 C 0.117 3.883 4 C 0.013 3.987 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.514 3.486 14 O -0.534 6.534 15 C -0.107 4.107 16 H 0.107 0.893 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.081 4.081 20 S -0.266 6.266 21 C -0.083 4.083 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.021 0.979 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -14.919 9.082 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C -0.004 4.004 4 C -0.025 4.025 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.299 3.701 14 O -0.411 6.411 15 C -0.130 4.130 16 H 0.125 0.875 17 C -0.149 4.149 18 C -0.160 4.160 19 C -0.229 4.229 20 S -0.039 6.039 21 C -0.231 4.231 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.647 -15.028 9.022 19.545 hybrid contribution 1.644 1.117 -0.267 2.006 sum -7.003 -13.910 8.755 17.866 Atomic orbital electron populations 1.21916 0.80677 1.03580 1.00806 1.48069 1.06575 1.07138 1.72399 1.21888 0.95622 0.81317 1.01591 1.19376 0.97004 0.96351 0.89732 1.21098 1.36250 1.06167 0.92484 0.92530 1.24996 0.95944 0.97750 0.95570 1.69977 1.46753 1.39246 0.97282 0.86559 0.80255 0.83491 0.77487 1.20595 1.21207 1.19816 1.20320 0.87943 0.84933 0.76863 1.90699 1.13777 1.87076 1.49510 1.21520 0.97840 0.94261 0.99334 0.87532 1.21343 0.97575 0.91863 1.04128 1.21751 0.99208 0.97683 0.97358 1.23535 0.98511 0.99230 1.01634 1.86904 1.17399 1.03595 1.96014 1.23749 1.01197 0.98092 1.00087 0.92899 0.90377 0.91253 0.91788 0.90943 0.96080 0.96613 0.92966 0.89618 0.91289 0.90444 0.90416 0.87870 0.89813 0.89462 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.80 59.85 0.53 1.47 16 2 N -0.61 -10.66 2.87 -181.57 -0.52 -11.18 16 3 C 0.12 2.47 5.35 -4.04 -0.02 2.44 16 4 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 5 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.51 9.11 7.06 -10.98 -0.08 9.04 16 14 O -0.53 -11.74 15.35 5.56 0.09 -11.66 16 15 C -0.11 -1.38 1.58 -91.94 -0.14 -1.52 16 16 H 0.11 1.32 7.30 -51.93 -0.38 0.94 16 17 C -0.11 -1.34 4.38 -27.16 -0.12 -1.46 16 18 C -0.12 -1.10 5.76 -26.90 -0.15 -1.25 16 19 C -0.08 -0.69 6.46 37.21 0.24 -0.45 16 20 S -0.27 -2.78 22.36 -107.50 -2.40 -5.18 16 21 C -0.08 -0.91 5.37 37.21 0.20 -0.71 16 22 H 0.05 0.55 6.89 -51.93 -0.36 0.19 16 23 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 24 H 0.07 0.77 6.03 -51.93 -0.31 0.46 16 25 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.07 1.64 7.42 -51.93 -0.39 1.26 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.19 7.70 -51.93 -0.40 0.79 16 31 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.12 1.23 4.47 -51.93 -0.23 0.99 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -32.85 306.35 -8.44 -41.29 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.82 Total: -2.40 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.11 Total: -5.84 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.21 Total: -37.64 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -2.78 SS G_CDS: -2.40 Total: -5.18 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.85 -8.44 -41.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.679 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds