Wall clock time and date at job start Mon Mar 30 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00051 * 2 1 4 4 C 1.53007 * 109.46962 * 270.00052 * 3 2 1 5 5 C 1.50700 * 109.46949 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00074 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99788 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99931 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99952 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46993 * 89.99909 * 9 7 5 11 11 H 1.48497 * 109.47100 * 209.99862 * 9 7 5 12 12 H 1.48498 * 109.46870 * 329.99963 * 9 7 5 13 13 C 1.34778 * 119.99979 * 179.97438 * 2 1 3 14 14 O 1.21273 * 120.00037 * 179.97438 * 13 2 1 15 15 C 1.50700 * 119.99931 * 0.02562 * 13 2 1 16 16 H 1.09002 * 109.39204 * 59.79626 * 15 13 2 17 17 C 1.52575 * 109.39187 * 179.50217 * 15 13 2 18 18 C 1.52580 * 110.73002 * 190.82388 * 17 15 13 19 19 C 1.53099 * 109.95400 * 289.32525 * 18 17 15 20 20 S 1.82094 * 108.89552 * 63.01234 * 19 18 17 21 21 C 1.53098 * 109.38841 * 299.99717 * 15 13 2 22 22 H 1.09002 * 109.46962 * 270.00394 * 1 2 3 23 23 H 1.09005 * 109.47320 * 29.99773 * 1 2 3 24 24 H 1.08998 * 109.47255 * 150.00502 * 1 2 3 25 25 H 1.08991 * 109.47450 * 29.99873 * 3 2 1 26 26 H 1.09000 * 109.47254 * 150.00710 * 3 2 1 27 27 H 1.09000 * 109.46794 * 300.00218 * 4 3 2 28 28 H 1.08997 * 109.46745 * 59.99754 * 4 3 2 29 29 H 0.97010 * 119.99855 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.22946 * 311.14748 * 17 15 13 31 31 H 1.09002 * 109.22829 * 70.49901 * 17 15 13 32 32 H 1.08996 * 109.39045 * 49.46799 * 18 17 15 33 33 H 1.09004 * 109.39255 * 169.17932 * 18 17 15 34 34 H 1.09000 * 109.57606 * 182.82905 * 19 18 17 35 35 H 1.09001 * 109.57620 * 303.21766 * 19 18 17 36 36 H 1.09002 * 109.57593 * 296.63488 * 21 15 13 37 37 H 1.09001 * 109.57569 * 56.89393 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 6 3.2065 3.0152 -1.4426 6 1 3.4772 3.4824 -0.5073 7 6 3.5518 3.6118 -2.6366 8 7 3.2234 3.0420 -3.7755 9 14 4.4871 5.2288 -2.6367 10 1 5.9468 4.9562 -2.6366 11 1 4.1291 6.0077 -3.8492 12 1 4.1289 6.0078 -1.4242 13 6 2.1389 -1.1672 0.0005 14 8 3.3516 -1.1672 0.0001 15 6 1.3853 -2.4723 0.0005 16 1 0.7568 -2.5273 -0.8883 17 6 2.3784 -3.6306 -0.0113 18 6 1.6639 -4.9518 -0.2797 19 6 0.8193 -5.3452 0.9352 20 16 -0.4691 -4.0841 1.1910 21 6 0.5054 -2.5512 1.2509 22 1 -0.3633 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1384 0.5137 27 1 3.0415 0.9507 -1.9564 28 1 1.5000 1.8407 -1.9563 29 1 3.4660 3.4620 -4.6157 30 1 3.1206 -3.4592 -0.7910 31 1 2.8798 -3.6835 0.9551 32 1 1.0170 -4.8431 -1.1501 33 1 2.4023 -5.7296 -0.4742 34 1 0.3518 -6.3135 0.7568 35 1 1.4548 -5.4016 1.8190 36 1 1.1348 -2.5530 2.1409 37 1 -0.1656 -1.6927 1.2800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260013631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:25 Heat of formation + Delta-G solvation = -71.175728 kcal Electronic energy + Delta-G solvation = -17466.818305 eV Core-core repulsion = 14754.862653 eV Total energy + Delta-G solvation = -2711.955652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30381 -37.56324 -36.92309 -35.23838 -33.20532 -31.48662 -28.42349 -27.76946 -27.01178 -24.74807 -23.21388 -21.81664 -20.14176 -18.64842 -18.28924 -17.53484 -16.89585 -16.58570 -16.42927 -15.85170 -15.34211 -14.89127 -14.66839 -14.46334 -14.31684 -14.14166 -13.79316 -13.62544 -13.39377 -13.02651 -12.83040 -12.61376 -12.53862 -12.39054 -11.98274 -11.91669 -11.87818 -11.79491 -11.42877 -10.87879 -10.60564 -10.50666 -9.57094 -8.69367 -8.24080 -6.36631 0.75842 1.38476 1.40609 1.41020 1.51700 1.67184 2.11537 2.40705 3.09606 3.50130 3.57893 3.58631 3.86706 4.05025 4.10747 4.22525 4.37393 4.39887 4.49712 4.51521 4.57401 4.73786 4.76657 4.83001 4.89206 4.94067 5.02006 5.11008 5.25087 5.28842 5.46774 5.57618 5.81287 6.15838 6.46593 6.78914 7.18132 7.33154 8.88134 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.004253 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.204343 B = 6582.706849 C = 6827.937697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.613 5.613 3 C 0.131 3.869 4 C 0.025 3.975 5 C -0.545 4.545 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.257 1.257 13 C 0.505 3.495 14 O -0.587 6.587 15 C -0.094 4.094 16 H 0.116 0.884 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.076 4.076 20 S -0.272 6.272 21 C -0.077 4.077 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.052 0.948 27 H -0.026 1.026 28 H 0.000 1.000 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 -15.287 10.199 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.344 5.344 3 C 0.009 3.991 4 C -0.014 4.014 5 C -0.583 4.583 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.793 3.207 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.181 1.181 13 C 0.293 3.707 14 O -0.467 6.467 15 C -0.117 4.117 16 H 0.134 0.866 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.224 4.224 20 S -0.044 6.044 21 C -0.225 4.225 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.071 0.929 27 H -0.008 1.008 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.926 -15.409 10.158 20.956 hybrid contribution 2.014 1.171 -0.640 2.416 sum -7.912 -14.238 9.518 18.866 Atomic orbital electron populations 1.22228 0.77509 1.04432 1.03265 1.48131 1.08527 1.05842 1.71896 1.21436 0.95989 0.83785 0.97888 1.19190 0.95061 0.94629 0.92471 1.21567 1.36635 1.07059 0.93085 0.91682 1.26005 0.96798 1.01856 0.95048 1.70116 1.47958 1.41173 0.98065 0.85385 0.78465 0.78585 0.78240 1.20252 1.20435 1.18115 1.21252 0.87661 0.86424 0.75385 1.90666 1.16307 1.87961 1.51806 1.21498 0.97799 0.91443 1.00949 0.86610 1.21338 0.97219 0.93341 1.02965 1.21697 0.99495 0.96171 0.97810 1.23622 0.97939 0.99376 1.01470 1.86969 1.17957 1.03507 1.96006 1.23646 1.00992 0.99351 0.98552 0.89514 0.90802 0.89226 0.89318 0.92923 1.00808 0.98134 0.92712 0.92217 0.91796 0.90207 0.88653 0.85703 0.89133 0.89641 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 8.80 127.77 1.12 2.73 16 2 N -0.61 -21.46 2.87 -846.76 -2.43 -23.89 16 3 C 0.13 5.67 5.35 86.38 0.46 6.13 16 4 C 0.02 1.34 5.30 29.85 0.16 1.50 16 5 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 6 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.00 0.05 5.46 84.65 0.46 0.52 16 8 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 9 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 13 C 0.51 18.28 7.06 87.66 0.62 18.90 16 14 O -0.59 -27.16 15.35 -3.01 -0.05 -27.21 16 15 C -0.09 -2.36 1.58 -11.65 -0.02 -2.38 16 16 H 0.12 2.71 7.30 -2.39 -0.02 2.69 16 17 C -0.11 -2.63 4.38 30.31 0.13 -2.50 16 18 C -0.11 -1.82 5.76 30.49 0.18 -1.64 16 19 C -0.08 -1.07 6.46 72.02 0.47 -0.61 16 20 S -0.27 -4.93 22.36 -56.49 -1.26 -6.19 16 21 C -0.08 -1.54 5.37 72.01 0.39 -1.15 16 22 H 0.09 1.53 6.89 -2.39 -0.02 1.51 16 23 H 0.07 1.86 8.07 -2.38 -0.02 1.84 16 24 H 0.09 1.79 6.03 -2.39 -0.01 1.77 16 25 H 0.09 3.36 8.07 -2.39 -0.02 3.34 16 26 H 0.05 2.47 7.42 -2.39 -0.02 2.45 16 27 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 30 H 0.06 1.73 7.70 -2.39 -0.02 1.71 16 31 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.13 2.29 4.47 -2.39 -0.01 2.28 16 Total: -1.00 -73.90 306.35 3.81 -70.09 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.04 Total: 8.11 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.20 Total: -10.02 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.15 Total: -81.72 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.26 Total: -6.19 kcal Total: -73.90 3.81 -70.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260013631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.083 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds