Wall clock time and date at job start Mon Mar 30 2020 04:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47229 * 2 1 4 4 H 1.08996 * 109.47430 * 176.62597 * 3 2 1 5 5 C 1.50708 * 109.47067 * 56.62496 * 3 2 1 6 6 H 1.07995 * 119.99569 * 240.00263 * 5 3 2 7 7 C 1.37878 * 119.99771 * 59.99906 * 5 3 2 8 8 N 1.31512 * 119.99984 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99656 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47091 * 60.00459 * 9 7 5 11 11 H 1.48502 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47192 * 299.99961 * 9 7 5 13 13 C 1.53004 * 109.47210 * 296.62785 * 3 2 1 14 14 N 1.46495 * 109.47154 * 294.61240 * 13 3 2 15 15 C 1.34773 * 120.00268 * 176.40320 * 14 13 3 16 16 O 1.21282 * 119.99835 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00179 * 179.97438 * 15 14 13 18 18 H 1.08999 * 108.70903 * 298.45989 * 17 15 14 19 19 C 1.52337 * 108.87071 * 179.97438 * 17 15 14 20 20 C 1.54261 * 112.58750 * 239.18349 * 19 17 15 21 21 S 1.83961 * 102.75024 * 335.37355 * 20 19 17 22 22 C 1.54257 * 108.86911 * 56.92219 * 17 15 14 23 23 H 1.09001 * 109.47216 * 305.30564 * 1 2 3 24 24 H 1.08998 * 109.47229 * 65.31020 * 1 2 3 25 25 H 1.09000 * 109.47080 * 185.30873 * 1 2 3 26 26 H 1.09002 * 109.47019 * 240.00076 * 2 1 3 27 27 H 1.08999 * 109.47331 * 120.00154 * 2 1 3 28 28 H 0.96997 * 120.00098 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47370 * 174.60672 * 13 3 2 30 30 H 1.09000 * 109.46947 * 54.61295 * 13 3 2 31 31 H 0.97001 * 119.99994 * 356.40038 * 14 13 3 32 32 H 1.08994 * 108.86820 * 118.35923 * 19 17 15 33 33 H 1.09001 * 108.86365 * 359.97438 * 19 17 15 34 34 H 1.09001 * 110.78960 * 93.73768 * 20 19 17 35 35 H 1.08994 * 110.78460 * 217.00689 * 20 19 17 36 36 H 1.09005 * 110.78879 * 263.62269 * 22 17 15 37 37 H 1.09000 * 110.79209 * 27.07426 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4431 0.0605 5 6 1.4705 2.1766 1.1866 6 1 0.8565 3.0522 1.0359 7 6 1.7333 1.7304 2.4644 8 7 2.4813 0.6643 2.6477 9 14 1.0280 2.6408 3.9351 10 1 -0.4546 2.6405 3.8529 11 1 1.4550 1.9652 5.1867 12 1 1.5236 4.0406 3.9349 13 6 1.6005 2.1388 -1.2895 14 7 2.2567 1.5042 -2.4353 15 6 1.9631 1.9063 -3.6877 16 8 1.1554 2.7932 -3.8662 17 6 2.6386 1.2539 -4.8663 18 1 3.7125 1.4251 -4.7927 19 6 2.1234 1.8970 -6.1476 20 6 1.4555 0.8788 -7.0946 21 16 2.2428 -0.7096 -6.6033 22 6 2.3711 -0.2645 -4.8171 23 1 -0.3634 0.5939 0.8387 24 1 -0.3633 0.4292 -0.9337 25 1 -0.3633 -1.0233 0.0951 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.6665 0.3506 3.5467 29 1 1.8803 3.1914 -1.2476 30 1 0.5191 2.0545 -1.3976 31 1 2.9025 0.7947 -2.2925 32 1 2.9588 2.3662 -6.6671 33 1 1.3961 2.6662 -5.8880 34 1 0.3788 0.8444 -6.9285 35 1 1.6775 1.1150 -8.1352 36 1 3.2030 -0.7889 -4.3469 37 1 1.4363 -0.4760 -4.2979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260090147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:01 Heat of formation + Delta-G solvation = -75.859023 kcal Electronic energy + Delta-G solvation = -17507.487639 eV Core-core repulsion = 14795.328904 eV Total energy + Delta-G solvation = -2712.158735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.08772 -37.99482 -36.35399 -35.04832 -33.16140 -30.98422 -29.54872 -27.08262 -26.27232 -24.88130 -22.91444 -20.87061 -20.57383 -18.67662 -17.96254 -17.58044 -16.80375 -16.64880 -16.28603 -15.99592 -15.33558 -14.97800 -14.85148 -14.53624 -14.15674 -13.88890 -13.45671 -13.06878 -12.87478 -12.80455 -12.70415 -12.66577 -12.51245 -12.43231 -11.92851 -11.79513 -11.47911 -11.32757 -11.08784 -10.83956 -10.53155 -10.41119 -9.94439 -8.77997 -8.07989 -6.18307 0.84703 1.22813 1.43630 1.44979 1.51270 1.63611 2.25699 2.48893 3.21807 3.46140 3.65527 3.84254 3.97935 4.16618 4.26443 4.42996 4.51742 4.54508 4.62988 4.65385 4.76729 4.82951 4.96346 5.01137 5.04354 5.12546 5.21376 5.41482 5.58234 5.66377 5.72786 5.89893 6.16034 6.36843 6.62742 6.87936 7.26506 7.48161 8.96453 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.042433 B = 0.004450 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.701559 B = 6291.292786 C = 6593.906518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.042 3.958 4 H 0.012 0.988 5 C -0.524 4.524 6 H 0.048 0.952 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.140 3.860 14 N -0.709 5.709 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.102 4.102 18 H 0.133 0.867 19 C -0.125 4.125 20 C -0.052 4.052 21 S -0.326 6.326 22 C -0.049 4.049 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.410 0.590 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 -2.243 -15.508 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.023 3.977 4 H 0.030 0.970 5 C -0.562 4.562 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 C 0.016 3.984 14 N -0.359 5.359 15 C 0.296 3.704 16 O -0.464 6.464 17 C -0.124 4.124 18 H 0.151 0.849 19 C -0.164 4.164 20 C -0.200 4.200 21 S -0.100 6.100 22 C -0.198 4.198 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.246 0.754 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.411 -2.746 -16.113 16.406 hybrid contribution -0.450 1.152 1.936 2.297 sum 0.961 -1.594 -14.177 14.299 Atomic orbital electron populations 1.21552 0.97203 0.99309 1.00195 1.21365 0.95134 0.97988 0.99916 1.18841 0.95363 0.93214 0.90310 0.97003 1.21182 1.31612 1.11918 0.91525 0.93416 1.25479 0.95395 0.95628 1.00899 1.69960 1.38504 1.24199 1.22138 0.85855 0.78955 0.78965 0.79355 1.19986 1.21038 1.20063 1.21336 0.96259 0.95533 0.85236 1.46105 1.44641 1.39673 1.05460 1.21045 0.81910 0.82526 0.84958 1.90632 1.36863 1.33200 1.85729 1.21924 1.03693 0.93844 0.92983 0.84917 1.22010 1.02693 0.99068 0.92660 1.24197 1.01903 0.90333 1.03581 1.88165 1.81466 1.29950 1.10369 1.24230 1.06736 0.94890 0.93918 0.94132 0.94216 0.94070 0.94010 0.92034 0.93032 0.94465 0.93177 0.75387 0.88277 0.89588 0.89483 0.85546 0.84913 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.31 71.98 0.67 -4.41 16 2 C -0.11 -4.50 5.36 30.59 0.16 -4.33 16 3 C 0.04 1.88 2.10 -11.54 -0.02 1.86 16 4 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 5 C -0.52 -27.05 7.05 25.60 0.18 -26.87 16 6 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 7 C 0.03 1.34 5.30 84.66 0.45 1.79 16 8 N -0.91 -49.17 11.36 21.45 0.24 -48.92 16 9 Si 0.94 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 C 0.14 5.60 4.85 86.38 0.42 6.02 16 14 N -0.71 -22.05 5.07 -463.07 -2.35 -24.39 16 15 C 0.51 15.19 6.99 87.66 0.61 15.80 16 16 O -0.58 -22.11 15.04 -3.04 -0.05 -22.15 16 17 C -0.10 -2.08 2.99 -11.33 -0.03 -2.12 16 18 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 19 C -0.13 -2.42 5.94 30.80 0.18 -2.23 16 20 C -0.05 -0.91 7.45 72.41 0.54 -0.37 16 21 S -0.33 -6.76 23.31 -56.49 -1.32 -8.08 16 22 C -0.05 -0.96 6.60 72.41 0.48 -0.48 16 23 H 0.04 1.83 6.92 -2.39 -0.02 1.81 16 24 H 0.04 1.50 6.67 -2.39 -0.02 1.49 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.50 7.21 -2.39 -0.02 1.48 16 27 H 0.06 3.01 6.17 -2.39 -0.01 2.99 16 28 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.13 6.38 -2.39 -0.02 2.11 16 31 H 0.41 10.79 7.59 -92.71 -0.70 10.09 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 2.10 6.12 -2.39 -0.01 2.09 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.13 2.02 8.14 -2.38 -0.02 2.01 16 37 H 0.09 1.88 7.85 -2.39 -0.02 1.86 16 Total: -1.00 -60.32 305.67 2.55 -57.76 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.36 Total: 16.97 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 3.64 Total: -15.35 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -2.11 Total: -73.32 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -6.76 SS G_CDS: -1.32 Total: -8.08 kcal Total: -60.32 2.55 -57.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.095 kcal (2) G-P(sol) polarization free energy of solvation -60.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds