Wall clock time and date at job start Mon Mar 30 2020 04:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47463 * 2 1 4 4 H 1.08993 * 109.47493 * 176.89237 * 3 2 1 5 5 C 1.50707 * 109.46904 * 56.89463 * 3 2 1 6 6 H 1.07999 * 120.00411 * 240.00169 * 5 3 2 7 7 C 1.37887 * 119.99511 * 60.00268 * 5 3 2 8 8 N 1.31510 * 119.99960 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99608 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47371 * 270.00365 * 9 7 5 11 11 H 1.48507 * 109.46857 * 30.00591 * 9 7 5 12 12 H 1.48503 * 109.47052 * 149.99909 * 9 7 5 13 13 C 1.52993 * 109.46958 * 296.90249 * 3 2 1 14 14 N 1.46501 * 109.47066 * 296.37074 * 13 3 2 15 15 C 1.34782 * 120.00187 * 179.34047 * 14 13 3 16 16 O 1.21273 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99813 * 180.02562 * 15 14 13 18 18 H 1.09006 * 108.82856 * 59.30092 * 17 15 14 19 19 C 1.52336 * 108.86714 * 177.82850 * 17 15 14 20 20 C 1.54255 * 112.58343 * 120.81999 * 19 17 15 21 21 S 1.83956 * 102.58500 * 24.53107 * 20 19 17 22 22 C 1.54256 * 108.86944 * 300.77117 * 17 15 14 23 23 H 1.09004 * 109.47532 * 185.77270 * 1 2 3 24 24 H 1.09000 * 109.47216 * 305.77856 * 1 2 3 25 25 H 1.09000 * 109.47275 * 65.77479 * 1 2 3 26 26 H 1.09001 * 109.47544 * 239.99587 * 2 1 3 27 27 H 1.09006 * 109.46850 * 119.99752 * 2 1 3 28 28 H 0.97005 * 119.99789 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.48026 * 56.37501 * 13 3 2 30 30 H 1.09009 * 109.47411 * 176.37662 * 13 3 2 31 31 H 0.97005 * 120.00141 * 359.34866 * 14 13 3 32 32 H 1.09000 * 108.86850 * 241.64149 * 19 17 15 33 33 H 1.08998 * 108.86724 * 359.97438 * 19 17 15 34 34 H 1.09005 * 110.78456 * 142.80710 * 20 19 17 35 35 H 1.09004 * 110.78561 * 266.06224 * 20 19 17 36 36 H 1.09000 * 110.78425 * 332.92389 * 22 17 15 37 37 H 1.09003 * 110.79177 * 96.38206 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 0.0557 5 6 1.4758 2.1748 1.1902 6 1 0.8612 3.0507 1.0438 7 6 1.7444 1.7264 2.4662 8 7 2.4924 0.6596 2.6445 9 14 1.0457 2.6345 3.9416 10 1 2.0028 3.6834 4.3760 11 1 -0.2453 3.2663 3.5679 12 1 0.8238 1.6755 5.0535 13 6 1.5947 2.1408 -1.2863 14 7 2.2129 1.4813 -2.4392 15 6 1.9524 1.9204 -3.6866 16 8 1.2065 2.8618 -3.8545 17 6 2.5879 1.2416 -4.8724 18 1 2.2924 0.1924 -4.8772 19 6 2.0809 1.9020 -6.1482 20 6 3.2205 2.4983 -6.9997 21 16 4.6754 1.5013 -6.4770 22 6 4.1218 1.3272 -4.7334 23 1 -0.3634 -1.0225 0.1034 24 1 -0.3633 0.6008 0.8337 25 1 -0.3634 0.4217 -0.9372 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.6817 0.3444 3.5422 29 1 0.5097 2.0840 -1.3739 30 1 1.9025 3.1862 -1.2576 31 1 2.8097 0.7285 -2.3049 32 1 1.5486 1.1590 -6.7422 33 1 1.3863 2.6983 -5.8808 34 1 3.0205 2.3631 -8.0627 35 1 3.3666 3.5530 -6.7664 36 1 4.4089 2.2001 -4.1471 37 1 4.5218 0.4145 -4.2918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260090159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:06 Heat of formation + Delta-G solvation = -59.886223 kcal Electronic energy + Delta-G solvation = -17447.875173 eV Core-core repulsion = 14736.409070 eV Total energy + Delta-G solvation = -2711.466103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80285 -36.40183 -35.27104 -33.42867 -31.34647 -29.97883 -27.93757 -25.86882 -24.77182 -23.18641 -21.74580 -19.49804 -19.05528 -17.47236 -16.74172 -16.01288 -15.62639 -15.06084 -14.77964 -14.56670 -14.15555 -13.72315 -13.35999 -13.10966 -13.04308 -12.17628 -12.09583 -11.81238 -11.74529 -11.65142 -11.38345 -11.01504 -10.97015 -10.73386 -10.54697 -10.35852 -9.94070 -9.72132 -9.44864 -9.23463 -8.92953 -8.55173 -8.35496 -7.89522 -6.08866 -4.14146 1.69571 2.08174 2.86318 3.26012 3.33311 3.36118 3.55725 4.35119 4.37825 4.63977 4.70238 4.86216 4.97788 5.20574 5.23486 5.33985 5.46305 5.61947 5.84981 6.02685 6.14472 6.23023 6.37068 6.45245 6.64712 6.70915 6.85232 6.94707 7.33964 7.44040 7.63330 7.74198 7.92728 8.01926 8.28800 8.54046 8.87486 9.50095 10.97377 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.039405 B = 0.004303 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.403452 B = 6504.881723 C = 6593.744478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.038 3.962 4 H 0.031 0.969 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.287 1.287 13 C 0.122 3.878 14 N -0.714 5.714 15 C 0.509 3.491 16 O -0.546 6.546 17 C -0.113 4.113 18 H 0.107 0.893 19 C -0.126 4.126 20 C -0.061 4.061 21 S -0.300 6.300 22 C -0.057 4.057 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.012 0.988 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.398 0.602 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -1.315 -14.337 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.019 3.981 4 H 0.049 0.951 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.212 1.212 13 C 0.000 4.000 14 N -0.363 5.363 15 C 0.292 3.708 16 O -0.425 6.425 17 C -0.136 4.136 18 H 0.126 0.874 19 C -0.166 4.166 20 C -0.209 4.209 21 S -0.073 6.073 22 C -0.206 4.206 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.191 -1.157 -14.887 15.092 hybrid contribution -0.992 0.386 1.589 1.913 sum 1.199 -0.771 -13.298 13.374 Atomic orbital electron populations 1.21658 0.97899 0.98654 1.00827 1.21508 0.94610 0.99047 0.99944 1.18957 0.96741 0.92385 0.90000 0.95135 1.20927 1.31767 1.11938 0.90120 0.92459 1.24890 0.95000 0.94930 0.98808 1.69865 1.37660 1.23194 1.21902 0.86609 0.79573 0.79573 0.82378 1.20669 1.19830 1.21238 1.21823 0.97303 0.96191 0.84648 1.46300 1.48566 1.35300 1.06148 1.20355 0.81730 0.84130 0.84570 1.90635 1.37679 1.28849 1.85320 1.21881 0.94315 1.02596 0.94785 0.87446 1.22008 0.98793 1.02326 0.93424 1.24158 0.92592 1.01171 1.02936 1.87920 1.36140 1.71181 1.12107 1.24125 0.94721 1.06655 0.95056 0.95854 0.91536 0.95170 0.96963 0.89134 0.92940 0.92083 0.92769 0.76793 0.90361 0.87527 0.87717 0.89118 0.88556 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.30 37.15 0.35 -2.39 16 2 C -0.11 -2.43 5.35 -26.73 -0.14 -2.58 16 3 C 0.04 0.86 2.14 -91.77 -0.20 0.66 16 4 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.51 -13.01 7.05 -34.43 -0.24 -13.25 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -23.87 11.35 55.43 0.63 -23.24 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.12 2.46 4.82 -4.04 -0.02 2.44 16 14 N -0.71 -11.58 5.13 -60.29 -0.31 -11.89 16 15 C 0.51 7.94 6.96 -10.98 -0.08 7.87 16 16 O -0.55 -10.48 15.04 5.56 0.08 -10.40 16 17 C -0.11 -1.30 2.98 -91.45 -0.27 -1.57 16 18 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.13 -1.37 5.94 -26.41 -0.16 -1.53 16 20 C -0.06 -0.60 7.46 37.81 0.28 -0.31 16 21 S -0.30 -3.44 23.26 -107.50 -2.50 -5.94 16 22 C -0.06 -0.62 6.66 37.81 0.25 -0.37 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 1.50 6.92 -51.93 -0.36 1.14 16 25 H 0.03 0.58 6.73 -51.93 -0.35 0.23 16 26 H 0.01 0.22 7.03 -51.93 -0.37 -0.14 16 27 H 0.09 2.22 6.16 -51.93 -0.32 1.90 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.06 1.30 6.46 -51.93 -0.34 0.96 16 30 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 31 H 0.40 5.67 7.44 -40.82 -0.30 5.36 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.37 6.12 -51.93 -0.32 1.05 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.13 7.85 -51.93 -0.41 0.72 16 37 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 305.50 15.07 4.60 4.60 Total: -1.00 -28.16 305.50 -8.52 -36.68 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.68 Total: 4.13 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.32 Total: -9.42 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.32 Total: -35.13 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.50 Total: -5.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.16 -8.52 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.206 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds