Wall clock time and date at job start Mon Mar 30 2020 04:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47463 * 2 1 4 4 H 1.08993 * 109.47493 * 176.89237 * 3 2 1 5 5 C 1.50707 * 109.46904 * 56.89463 * 3 2 1 6 6 H 1.07999 * 120.00411 * 240.00169 * 5 3 2 7 7 C 1.37887 * 119.99511 * 60.00268 * 5 3 2 8 8 N 1.31510 * 119.99960 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99608 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47371 * 270.00365 * 9 7 5 11 11 H 1.48507 * 109.46857 * 30.00591 * 9 7 5 12 12 H 1.48503 * 109.47052 * 149.99909 * 9 7 5 13 13 C 1.52993 * 109.46958 * 296.90249 * 3 2 1 14 14 N 1.46501 * 109.47066 * 296.37074 * 13 3 2 15 15 C 1.34782 * 120.00187 * 179.34047 * 14 13 3 16 16 O 1.21273 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99813 * 180.02562 * 15 14 13 18 18 H 1.09006 * 108.82856 * 59.30092 * 17 15 14 19 19 C 1.52336 * 108.86714 * 177.82850 * 17 15 14 20 20 C 1.54255 * 112.58343 * 120.81999 * 19 17 15 21 21 S 1.83956 * 102.58500 * 24.53107 * 20 19 17 22 22 C 1.54256 * 108.86944 * 300.77117 * 17 15 14 23 23 H 1.09004 * 109.47532 * 185.77270 * 1 2 3 24 24 H 1.09000 * 109.47216 * 305.77856 * 1 2 3 25 25 H 1.09000 * 109.47275 * 65.77479 * 1 2 3 26 26 H 1.09001 * 109.47544 * 239.99587 * 2 1 3 27 27 H 1.09006 * 109.46850 * 119.99752 * 2 1 3 28 28 H 0.97005 * 119.99789 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.48026 * 56.37501 * 13 3 2 30 30 H 1.09009 * 109.47411 * 176.37662 * 13 3 2 31 31 H 0.97005 * 120.00141 * 359.34866 * 14 13 3 32 32 H 1.09000 * 108.86850 * 241.64149 * 19 17 15 33 33 H 1.08998 * 108.86724 * 359.97438 * 19 17 15 34 34 H 1.09005 * 110.78456 * 142.80710 * 20 19 17 35 35 H 1.09004 * 110.78561 * 266.06224 * 20 19 17 36 36 H 1.09000 * 110.78425 * 332.92389 * 22 17 15 37 37 H 1.09003 * 110.79177 * 96.38206 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 0.0557 5 6 1.4758 2.1748 1.1902 6 1 0.8612 3.0507 1.0438 7 6 1.7444 1.7264 2.4662 8 7 2.4924 0.6596 2.6445 9 14 1.0457 2.6345 3.9416 10 1 2.0028 3.6834 4.3760 11 1 -0.2453 3.2663 3.5679 12 1 0.8238 1.6755 5.0535 13 6 1.5947 2.1408 -1.2863 14 7 2.2129 1.4813 -2.4392 15 6 1.9524 1.9204 -3.6866 16 8 1.2065 2.8618 -3.8545 17 6 2.5879 1.2416 -4.8724 18 1 2.2924 0.1924 -4.8772 19 6 2.0809 1.9020 -6.1482 20 6 3.2205 2.4983 -6.9997 21 16 4.6754 1.5013 -6.4770 22 6 4.1218 1.3272 -4.7334 23 1 -0.3634 -1.0225 0.1034 24 1 -0.3633 0.6008 0.8337 25 1 -0.3634 0.4217 -0.9372 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.6817 0.3444 3.5422 29 1 0.5097 2.0840 -1.3739 30 1 1.9025 3.1862 -1.2576 31 1 2.8097 0.7285 -2.3049 32 1 1.5486 1.1590 -6.7422 33 1 1.3863 2.6983 -5.8808 34 1 3.0205 2.3631 -8.0627 35 1 3.3666 3.5530 -6.7664 36 1 4.4089 2.2001 -4.1471 37 1 4.5218 0.4145 -4.2918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260090159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:06 Heat of formation + Delta-G solvation = -76.070944 kcal Electronic energy + Delta-G solvation = -17448.576995 eV Core-core repulsion = 14736.409070 eV Total energy + Delta-G solvation = -2712.167925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09038 -38.01032 -36.36195 -35.04320 -33.15543 -30.97923 -29.57705 -27.10336 -26.27514 -24.88153 -22.92191 -20.83787 -20.60417 -18.68050 -17.96054 -17.59607 -16.88408 -16.54381 -16.37098 -15.88055 -15.47939 -14.98027 -14.77695 -14.54836 -14.12826 -13.97279 -13.42868 -13.05160 -12.88781 -12.82601 -12.71676 -12.68518 -12.50823 -12.41643 -11.92657 -11.78610 -11.48221 -11.32568 -11.08762 -10.82801 -10.53933 -10.41949 -9.94847 -8.78059 -8.08521 -6.18777 0.84564 1.22736 1.41672 1.44778 1.52709 1.63777 2.25542 2.48534 3.21345 3.45966 3.65208 3.83697 3.97886 4.16325 4.25481 4.44103 4.51546 4.53291 4.63621 4.64039 4.76517 4.82763 4.96212 5.01692 5.03991 5.12440 5.21444 5.41589 5.58547 5.66128 5.73382 5.89899 6.16188 6.36635 6.62559 6.87723 7.26329 7.47775 8.96094 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.039405 B = 0.004303 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.403452 B = 6504.881723 C = 6593.744478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.041 3.959 4 H 0.011 0.989 5 C -0.523 4.523 6 H 0.047 0.953 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.284 1.284 13 C 0.141 3.859 14 N -0.709 5.709 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.101 4.101 18 H 0.133 0.867 19 C -0.126 4.126 20 C -0.053 4.053 21 S -0.321 6.321 22 C -0.053 4.053 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.260 0.740 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.410 0.590 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -2.149 -15.597 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.022 3.978 4 H 0.029 0.971 5 C -0.561 4.561 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.197 1.197 12 H -0.210 1.210 13 C 0.017 3.983 14 N -0.359 5.359 15 C 0.296 3.704 16 O -0.464 6.464 17 C -0.124 4.124 18 H 0.151 0.849 19 C -0.165 4.165 20 C -0.201 4.201 21 S -0.094 6.094 22 C -0.202 4.202 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.246 0.754 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.126 -2.003 -16.161 16.423 hybrid contribution -0.957 0.678 1.938 2.265 sum 1.169 -1.324 -14.223 14.332 Atomic orbital electron populations 1.21555 0.97078 0.99401 1.00264 1.21374 0.95253 0.97912 0.99958 1.18843 0.95289 0.93294 0.90347 0.97140 1.21211 1.31559 1.11861 0.91515 0.93429 1.25485 0.95402 0.95613 1.00938 1.69970 1.38528 1.24109 1.22216 0.85794 0.78941 0.78578 0.79785 1.20495 1.19670 1.20957 1.21321 0.96658 0.95223 0.85088 1.46115 1.48676 1.35548 1.05552 1.21046 0.80881 0.83468 0.85044 1.90629 1.39351 1.30553 1.85889 1.21930 0.94302 1.03430 0.92756 0.84881 1.22013 0.98766 1.02251 0.93458 1.24209 0.91206 1.00579 1.04084 1.88035 1.37405 1.71511 1.12464 1.24130 0.94107 1.07187 0.94737 0.93977 0.94123 0.94089 0.93949 0.92018 0.93035 0.93150 0.94580 0.75374 0.88222 0.89614 0.85482 0.89489 0.89751 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.30 71.98 0.67 -4.36 16 2 C -0.11 -4.51 5.35 30.59 0.16 -4.35 16 3 C 0.04 1.87 2.14 -11.54 -0.02 1.84 16 4 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 5 C -0.52 -27.06 7.05 25.60 0.18 -26.88 16 6 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 7 C 0.03 1.32 5.30 84.66 0.45 1.77 16 8 N -0.91 -49.22 11.35 21.45 0.24 -48.97 16 9 Si 0.94 42.20 29.54 68.60 2.03 44.23 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.14 5.65 4.82 86.38 0.42 6.06 16 14 N -0.71 -22.12 5.13 -463.06 -2.37 -24.49 16 15 C 0.51 15.24 6.96 87.66 0.61 15.85 16 16 O -0.58 -22.16 15.04 -3.01 -0.05 -22.21 16 17 C -0.10 -2.08 2.98 -11.33 -0.03 -2.12 16 18 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 19 C -0.13 -2.43 5.94 30.80 0.18 -2.25 16 20 C -0.05 -0.92 7.46 72.41 0.54 -0.38 16 21 S -0.32 -6.65 23.26 -56.49 -1.31 -7.96 16 22 C -0.05 -1.04 6.66 72.41 0.48 -0.56 16 23 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 24 H 0.04 1.82 6.92 -2.39 -0.02 1.80 16 25 H 0.04 1.52 6.73 -2.39 -0.02 1.51 16 26 H 0.04 1.50 7.03 -2.39 -0.02 1.49 16 27 H 0.06 3.01 6.16 -2.38 -0.01 2.99 16 28 H 0.26 13.58 8.31 -92.70 -0.77 12.80 16 29 H 0.05 2.13 6.46 -2.39 -0.02 2.12 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.41 10.85 7.44 -92.70 -0.69 10.16 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 2.10 6.12 -2.39 -0.01 2.09 16 34 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.08 1.87 7.85 -2.39 -0.02 1.85 16 37 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -60.47 305.50 2.54 -57.92 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.37 Total: 16.86 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 3.64 Total: -15.37 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -2.13 Total: -73.47 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -1.31 Total: -7.96 kcal Total: -60.47 2.54 -57.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.146 kcal (2) G-P(sol) polarization free energy of solvation -60.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds