Wall clock time and date at job start Mon Mar 30 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47470 * 2 1 4 4 C 1.53006 * 109.47384 * 119.99853 * 2 1 3 5 5 H 1.08998 * 109.47045 * 181.52598 * 4 2 1 6 6 C 1.50701 * 109.47148 * 301.52541 * 4 2 1 7 7 H 1.07998 * 119.99784 * 56.42017 * 6 4 2 8 8 C 1.37869 * 120.00107 * 236.42300 * 6 4 2 9 9 N 1.31518 * 120.00210 * 5.55865 * 8 6 4 10 10 Si 1.86802 * 120.00208 * 185.56359 * 8 6 4 11 11 H 1.48501 * 109.47418 * 89.99387 * 10 8 6 12 12 H 1.48502 * 109.47404 * 209.99880 * 10 8 6 13 13 H 1.48504 * 109.46714 * 329.99507 * 10 8 6 14 14 N 1.46500 * 109.47062 * 61.52452 * 4 2 1 15 15 C 1.34780 * 119.99659 * 84.99871 * 14 4 2 16 16 O 1.21274 * 120.00071 * 0.02562 * 15 14 4 17 17 C 1.50706 * 119.99694 * 180.02562 * 15 14 4 18 18 H 1.09004 * 110.91579 * 26.39300 * 17 15 14 19 19 C 1.55128 * 110.85516 * 150.00230 * 17 15 14 20 20 C 1.53860 * 106.93297 * 160.27587 * 19 17 15 21 21 C 1.54297 * 108.90944 * 312.79951 * 20 19 17 22 22 S 1.83089 * 104.67146 * 27.89562 * 21 20 19 23 23 H 1.09008 * 109.46851 * 299.99920 * 1 2 3 24 24 H 1.08993 * 109.47367 * 59.99721 * 1 2 3 25 25 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47251 * 240.00078 * 2 1 3 27 27 H 1.09003 * 109.46841 * 54.10158 * 3 2 1 28 28 H 1.08998 * 109.47322 * 174.10349 * 3 2 1 29 29 H 1.09003 * 109.46541 * 294.10729 * 3 2 1 30 30 H 0.97002 * 120.00019 * 180.02562 * 9 8 6 31 31 H 0.96993 * 120.00021 * 265.00228 * 14 4 2 32 32 H 1.09001 * 109.97985 * 279.65570 * 19 17 15 33 33 H 1.09001 * 109.98018 * 40.89257 * 19 17 15 34 34 H 1.08996 * 109.61012 * 72.67905 * 20 19 17 35 35 H 1.09000 * 109.60921 * 192.84700 * 20 19 17 36 36 H 1.08997 * 110.36522 * 269.10188 * 21 20 19 37 37 H 1.09000 * 110.51301 * 146.75749 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1297 -0.6976 1.2630 6 6 1.5071 -0.0330 2.4795 7 1 0.4423 0.0922 2.6096 8 6 2.3788 0.4369 3.4387 9 7 3.6763 0.3833 3.2310 10 14 1.7169 1.1495 5.0336 11 1 1.5827 0.0670 6.0414 12 1 2.6541 2.1840 5.5402 13 1 0.3876 1.7639 4.7871 14 7 1.5820 -2.1127 1.2311 15 6 2.2877 -3.0457 0.5618 16 8 3.3021 -2.7335 -0.0249 17 6 1.8162 -4.4770 0.5426 18 1 0.7364 -4.5328 0.6808 19 6 2.2420 -5.1811 -0.7724 20 6 2.1811 -6.6959 -0.5097 21 6 2.8860 -7.0000 0.8288 22 16 2.6897 -5.4695 1.8144 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.5930 1.9859 0.8325 28 1 3.1249 1.4443 0.1056 29 1 1.7654 1.9249 -0.9381 30 1 4.2896 0.7136 3.9061 31 1 0.7708 -2.3624 1.7006 32 1 1.5559 -4.9148 -1.5765 33 1 3.2580 -4.8899 -1.0387 34 1 1.1407 -7.0163 -0.4557 35 1 2.6835 -7.2278 -1.3176 36 1 3.9421 -7.2116 0.6618 37 1 2.4058 -7.8397 1.3312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:03 Heat of formation + Delta-G solvation = -62.196648 kcal Electronic energy + Delta-G solvation = -17758.623819 eV Core-core repulsion = 15047.057528 eV Total energy + Delta-G solvation = -2711.566290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.93134 -36.20581 -35.25208 -32.26568 -32.24476 -29.78224 -26.70148 -26.14977 -25.07202 -23.07766 -21.11321 -19.86090 -18.59113 -17.48935 -16.41742 -15.98162 -15.23052 -14.81191 -14.37306 -14.10506 -13.88190 -13.51952 -13.24511 -12.87002 -12.54099 -12.19776 -12.03014 -11.64635 -11.45238 -11.30471 -11.04222 -10.99562 -10.90791 -10.84133 -10.37720 -10.14807 -9.98779 -9.80171 -9.73403 -9.06855 -8.86259 -8.65215 -7.66038 -7.47222 -6.15935 -4.25287 1.71100 2.43628 3.23509 3.32087 3.32956 3.79557 4.06254 4.33558 4.57688 4.74584 4.86786 5.11882 5.20601 5.26649 5.54349 5.59200 5.61825 5.80068 5.85077 6.07927 6.11443 6.19507 6.21238 6.52639 6.79008 6.85485 6.88742 7.22498 7.29783 7.44814 7.62355 7.73187 7.81359 8.05848 8.79771 8.92758 9.23270 9.43751 10.90754 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.006571 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.639205 B = 4260.043027 C = 4974.708271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.120 4.120 4 C 0.248 3.752 5 H 0.089 0.911 6 C -0.524 4.524 7 H 0.061 0.939 8 C 0.077 3.923 9 N -0.871 5.871 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 N -0.696 5.696 15 C 0.518 3.482 16 O -0.545 6.545 17 C -0.072 4.072 18 H 0.106 0.894 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.083 4.083 22 S -0.246 6.246 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.266 0.734 31 H 0.384 0.616 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -10.554 -5.850 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C -0.178 4.178 4 C 0.148 3.852 5 H 0.107 0.893 6 C -0.562 4.562 7 H 0.079 0.921 8 C -0.129 4.129 9 N -0.506 5.506 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.197 1.197 14 N -0.344 5.344 15 C 0.299 3.701 16 O -0.424 6.424 17 C -0.203 4.203 18 H 0.124 0.876 19 C -0.154 4.154 20 C -0.164 4.164 21 C -0.232 4.232 22 S -0.020 6.020 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.216 0.784 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.234 -9.990 -5.056 11.970 hybrid contribution -1.108 -0.141 0.101 1.122 sum -5.342 -10.131 -4.955 12.479 Atomic orbital electron populations 1.21735 0.97066 0.99876 1.00356 1.21389 0.94573 0.96598 0.98838 1.21519 1.01114 0.96034 0.99156 1.19133 0.98903 0.75362 0.91789 0.89313 1.21087 0.93278 1.37642 1.04239 0.92073 1.25068 0.94791 0.94854 0.98224 1.69936 1.01674 1.44549 1.34489 0.86592 0.78951 0.78852 0.83594 1.20462 1.21105 1.19657 1.47310 1.26834 1.10732 1.49489 1.19634 0.84772 0.85221 0.80434 1.90631 1.24885 1.81348 1.45509 1.24283 1.02449 0.96971 0.96643 0.87580 1.22517 1.04616 0.92718 0.95513 1.22295 1.01309 0.96435 0.96411 1.24040 1.04315 0.97627 0.97186 1.87942 1.78048 1.12695 1.23340 0.91949 0.95192 0.94389 0.94227 0.92011 0.93170 0.95581 0.92403 0.78373 0.89828 0.88693 0.90843 0.89910 0.89034 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.76 37.15 0.33 -2.17 16 2 C -0.09 -2.05 2.89 -90.62 -0.26 -2.31 16 3 C -0.12 -2.57 8.85 37.16 0.33 -2.24 16 4 C 0.25 6.07 2.11 -69.08 -0.15 5.92 16 5 H 0.09 2.61 6.36 -51.93 -0.33 2.28 16 6 C -0.52 -13.29 6.74 -34.44 -0.23 -13.53 16 7 H 0.06 1.50 6.58 -52.49 -0.35 1.16 16 8 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 9 N -0.87 -24.74 12.62 55.43 0.70 -24.04 16 10 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 N -0.70 -14.96 4.37 -54.93 -0.24 -15.20 16 15 C 0.52 10.86 7.01 -10.98 -0.08 10.79 16 16 O -0.54 -13.49 15.64 5.56 0.09 -13.40 16 17 C -0.07 -1.15 3.62 -26.75 -0.10 -1.24 16 18 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 19 C -0.11 -1.53 5.76 -25.16 -0.14 -1.68 16 20 C -0.13 -1.28 6.39 -25.60 -0.16 -1.44 16 21 C -0.08 -0.95 7.34 37.84 0.28 -0.67 16 22 S -0.25 -4.06 22.71 -107.50 -2.44 -6.50 16 23 H 0.06 1.21 6.50 -51.92 -0.34 0.87 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.36 7.48 -51.93 -0.39 0.97 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.38 7.40 8.59 -40.82 -0.35 7.05 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.48 7.34 -51.93 -0.38 1.10 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -30.10 311.36 -8.40 -38.50 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.89 Total: 7.14 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.29 Total: -6.62 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.46 Total: -39.24 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.44 Total: -6.50 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.10 -8.40 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.694 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds