Wall clock time and date at job start Mon Mar 30 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47470 * 2 1 4 4 C 1.53006 * 109.47384 * 119.99853 * 2 1 3 5 5 H 1.08998 * 109.47045 * 181.52598 * 4 2 1 6 6 C 1.50701 * 109.47148 * 301.52541 * 4 2 1 7 7 H 1.07998 * 119.99784 * 56.42017 * 6 4 2 8 8 C 1.37869 * 120.00107 * 236.42300 * 6 4 2 9 9 N 1.31518 * 120.00210 * 5.55865 * 8 6 4 10 10 Si 1.86802 * 120.00208 * 185.56359 * 8 6 4 11 11 H 1.48501 * 109.47418 * 89.99387 * 10 8 6 12 12 H 1.48502 * 109.47404 * 209.99880 * 10 8 6 13 13 H 1.48504 * 109.46714 * 329.99507 * 10 8 6 14 14 N 1.46500 * 109.47062 * 61.52452 * 4 2 1 15 15 C 1.34780 * 119.99659 * 84.99871 * 14 4 2 16 16 O 1.21274 * 120.00071 * 0.02562 * 15 14 4 17 17 C 1.50706 * 119.99694 * 180.02562 * 15 14 4 18 18 H 1.09004 * 110.91579 * 26.39300 * 17 15 14 19 19 C 1.55128 * 110.85516 * 150.00230 * 17 15 14 20 20 C 1.53860 * 106.93297 * 160.27587 * 19 17 15 21 21 C 1.54297 * 108.90944 * 312.79951 * 20 19 17 22 22 S 1.83089 * 104.67146 * 27.89562 * 21 20 19 23 23 H 1.09008 * 109.46851 * 299.99920 * 1 2 3 24 24 H 1.08993 * 109.47367 * 59.99721 * 1 2 3 25 25 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47251 * 240.00078 * 2 1 3 27 27 H 1.09003 * 109.46841 * 54.10158 * 3 2 1 28 28 H 1.08998 * 109.47322 * 174.10349 * 3 2 1 29 29 H 1.09003 * 109.46541 * 294.10729 * 3 2 1 30 30 H 0.97002 * 120.00019 * 180.02562 * 9 8 6 31 31 H 0.96993 * 120.00021 * 265.00228 * 14 4 2 32 32 H 1.09001 * 109.97985 * 279.65570 * 19 17 15 33 33 H 1.09001 * 109.98018 * 40.89257 * 19 17 15 34 34 H 1.08996 * 109.61012 * 72.67905 * 20 19 17 35 35 H 1.09000 * 109.60921 * 192.84700 * 20 19 17 36 36 H 1.08997 * 110.36522 * 269.10188 * 21 20 19 37 37 H 1.09000 * 110.51301 * 146.75749 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1297 -0.6976 1.2630 6 6 1.5071 -0.0330 2.4795 7 1 0.4423 0.0922 2.6096 8 6 2.3788 0.4369 3.4387 9 7 3.6763 0.3833 3.2310 10 14 1.7169 1.1495 5.0336 11 1 1.5827 0.0670 6.0414 12 1 2.6541 2.1840 5.5402 13 1 0.3876 1.7639 4.7871 14 7 1.5820 -2.1127 1.2311 15 6 2.2877 -3.0457 0.5618 16 8 3.3021 -2.7335 -0.0249 17 6 1.8162 -4.4770 0.5426 18 1 0.7364 -4.5328 0.6808 19 6 2.2420 -5.1811 -0.7724 20 6 2.1811 -6.6959 -0.5097 21 6 2.8860 -7.0000 0.8288 22 16 2.6897 -5.4695 1.8144 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.5930 1.9859 0.8325 28 1 3.1249 1.4443 0.1056 29 1 1.7654 1.9249 -0.9381 30 1 4.2896 0.7136 3.9061 31 1 0.7708 -2.3624 1.7006 32 1 1.5559 -4.9148 -1.5765 33 1 3.2580 -4.8899 -1.0387 34 1 1.1407 -7.0163 -0.4557 35 1 2.6835 -7.2278 -1.3176 36 1 3.9421 -7.2116 0.6618 37 1 2.4058 -7.8397 1.3312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:03 Heat of formation + Delta-G solvation = -81.107403 kcal Electronic energy + Delta-G solvation = -17759.443851 eV Core-core repulsion = 15047.057528 eV Total energy + Delta-G solvation = -2712.386322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64326 -37.82440 -36.50172 -34.26065 -34.00195 -30.99902 -28.52043 -27.78590 -26.37408 -24.82111 -22.30436 -21.37750 -20.39405 -19.15839 -17.79099 -17.64939 -16.97040 -16.30434 -15.95232 -15.58345 -15.29029 -15.03429 -14.69311 -14.55004 -13.94769 -13.80042 -13.30767 -13.21579 -12.86099 -12.79498 -12.62498 -12.56197 -12.43183 -12.15452 -11.95985 -11.76223 -11.70476 -11.57710 -10.93494 -10.90468 -10.75713 -10.64697 -9.49444 -8.76751 -8.18140 -6.33059 0.44620 1.36542 1.41709 1.43804 1.53377 2.18471 2.36206 2.52488 3.24557 3.51555 3.82249 3.88155 4.07519 4.16788 4.27095 4.38003 4.46792 4.51981 4.66563 4.73671 4.91346 4.95681 4.97308 5.07004 5.15056 5.20580 5.21250 5.47465 5.51608 5.62440 5.67190 5.76312 5.99049 6.12872 6.89943 7.02378 7.37916 7.57180 8.89500 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.006571 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.639205 B = 4260.043027 C = 4974.708271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 C -0.114 4.114 4 C 0.253 3.747 5 H 0.030 0.970 6 C -0.520 4.520 7 H 0.074 0.926 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.958 3.042 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.255 1.255 14 N -0.696 5.696 15 C 0.512 3.488 16 O -0.591 6.591 17 C -0.056 4.056 18 H 0.136 0.864 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.063 4.063 22 S -0.329 6.329 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.019 0.981 29 H 0.058 0.942 30 H 0.262 0.738 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 -12.157 -6.582 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.113 4.113 3 C -0.171 4.171 4 C 0.151 3.849 5 H 0.049 0.951 6 C -0.558 4.558 7 H 0.092 0.908 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.783 3.217 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.179 1.179 14 N -0.343 5.343 15 C 0.296 3.704 16 O -0.473 6.473 17 C -0.188 4.188 18 H 0.154 0.846 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.210 4.210 22 S -0.104 6.104 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.010 -11.615 -5.784 14.747 hybrid contribution -0.206 0.290 0.252 0.436 sum -7.216 -11.325 -5.532 14.523 Atomic orbital electron populations 1.21620 0.93955 1.01064 1.01320 1.21325 0.97097 0.96078 0.96769 1.21451 0.99007 0.96197 1.00492 1.18809 0.95704 0.77196 0.93184 0.95143 1.21356 0.93653 1.36738 1.04092 0.90786 1.25888 0.94837 0.95620 1.01572 1.70121 1.03169 1.46744 1.35511 0.85560 0.78754 0.77881 0.79467 1.20480 1.21573 1.17898 1.47001 1.27379 1.10079 1.49882 1.20417 0.83797 0.87204 0.79024 1.90606 1.26828 1.82613 1.47275 1.24193 1.03623 0.93094 0.97850 0.84596 1.22568 1.03234 0.94965 0.94535 1.22297 1.03113 0.93767 0.96182 1.24224 1.05316 0.94636 0.96837 1.88211 1.78946 1.17083 1.26135 0.92469 0.92650 0.93120 0.95401 0.92869 0.96208 0.92296 0.92876 0.76897 0.87766 0.91730 0.88265 0.87201 0.88614 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.76 71.98 0.63 -3.68 16 2 C -0.09 -4.05 2.89 -10.79 -0.03 -4.08 16 3 C -0.11 -4.90 8.85 71.98 0.64 -4.26 16 4 C 0.25 12.73 2.11 44.25 0.09 12.82 16 5 H 0.03 1.91 6.36 -2.39 -0.02 1.89 16 6 C -0.52 -26.60 6.74 25.60 0.17 -26.43 16 7 H 0.07 3.55 6.58 -2.91 -0.02 3.53 16 8 C 0.02 1.20 5.45 84.65 0.46 1.67 16 9 N -0.92 -54.65 12.62 21.45 0.27 -54.38 16 10 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 14 N -0.70 -30.21 4.37 -446.08 -1.95 -32.16 16 15 C 0.51 21.85 7.01 87.66 0.61 22.46 16 16 O -0.59 -30.67 15.64 -3.01 -0.05 -30.72 16 17 C -0.06 -1.74 3.62 30.58 0.11 -1.63 16 18 H 0.14 3.34 8.14 -2.39 -0.02 3.32 16 19 C -0.11 -2.80 5.76 31.61 0.18 -2.62 16 20 C -0.12 -1.86 6.39 31.32 0.20 -1.66 16 21 C -0.06 -1.24 7.34 72.42 0.53 -0.71 16 22 S -0.33 -10.69 22.71 -56.49 -1.28 -11.97 16 23 H 0.06 2.08 6.50 -2.38 -0.02 2.06 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.64 7.65 -2.39 -0.02 1.62 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 2.34 7.48 -2.39 -0.02 2.33 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.40 15.03 8.59 -92.71 -0.80 14.24 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.00 7.34 -2.39 -0.02 1.98 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.20 311.36 2.88 -67.32 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.26 Total: 25.58 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 3.60 Total: -8.12 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.68 Total: -86.54 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.28 Total: -11.97 kcal Total: -70.20 2.88 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.785 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds