Wall clock time and date at job start Mon Mar 30 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47252 * 2 1 4 4 C 1.52998 * 109.47150 * 119.99976 * 2 1 3 5 5 H 1.08993 * 109.47422 * 185.51600 * 4 2 1 6 6 C 1.50705 * 109.47083 * 65.51463 * 4 2 1 7 7 H 1.07998 * 119.99894 * 245.46274 * 6 4 2 8 8 C 1.37878 * 119.99689 * 65.46466 * 6 4 2 9 9 N 1.31508 * 120.00179 * 9.41152 * 8 6 4 10 10 Si 1.86805 * 119.99622 * 189.41047 * 8 6 4 11 11 H 1.48499 * 109.46982 * 84.99580 * 10 8 6 12 12 H 1.48497 * 109.46702 * 204.99314 * 10 8 6 13 13 H 1.48500 * 109.47088 * 324.99474 * 10 8 6 14 14 N 1.46500 * 109.47021 * 305.51795 * 4 2 1 15 15 C 1.34774 * 120.00052 * 274.99857 * 14 4 2 16 16 O 1.21289 * 120.00096 * 359.97438 * 15 14 4 17 17 C 1.50699 * 120.00179 * 179.97438 * 15 14 4 18 18 H 1.08999 * 111.02610 * 25.76815 * 17 15 14 19 19 C 1.55152 * 111.13040 * 150.00066 * 17 15 14 20 20 C 1.52941 * 108.81297 * 159.26061 * 19 17 15 21 21 C 1.53708 * 112.48954 * 329.99188 * 20 19 17 22 22 S 1.83398 * 104.96823 * 2.82408 * 21 20 19 23 23 H 1.08999 * 109.46664 * 300.00472 * 1 2 3 24 24 H 1.08998 * 109.46513 * 60.00139 * 1 2 3 25 25 H 1.08998 * 109.47213 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46664 * 239.99528 * 2 1 3 27 27 H 1.08994 * 109.47033 * 59.99884 * 3 2 1 28 28 H 1.08997 * 109.47214 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46929 * 300.00026 * 3 2 1 30 30 H 0.97002 * 120.00210 * 180.02562 * 9 8 6 31 31 H 0.97006 * 120.00512 * 94.99923 * 14 4 2 32 32 H 1.09001 * 109.60970 * 39.42006 * 19 17 15 33 33 H 1.09002 * 109.60614 * 279.09958 * 19 17 15 34 34 H 1.08999 * 108.88890 * 90.78787 * 20 19 17 35 35 H 1.09001 * 108.89193 * 209.19850 * 20 19 17 36 36 H 1.08995 * 110.34557 * 121.69534 * 21 20 19 37 37 H 1.09004 * 110.33928 * 243.95529 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1255 -0.6365 1.3000 6 6 1.6523 -2.1760 1.1828 7 1 0.9560 -2.5826 1.9013 8 6 2.1866 -2.9879 0.2049 9 7 3.1682 -2.5476 -0.5515 10 14 1.5160 -4.7134 -0.0457 11 1 0.3305 -4.6589 -0.9383 12 1 2.5627 -5.5660 -0.6643 13 1 1.1220 -5.2867 1.2662 14 7 1.4463 -0.1116 2.4417 15 6 2.0149 0.9774 2.9959 16 8 3.0185 1.4524 2.5078 17 6 1.4038 1.6050 4.2222 18 1 0.8327 0.8727 4.7929 19 6 2.4874 2.2797 5.1042 20 6 1.8134 3.3101 6.0115 21 6 0.5561 3.9223 5.3735 22 16 0.3647 3.0493 3.7720 23 1 -0.3632 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 3.5438 -3.1186 -1.2398 31 1 0.6439 -0.4916 2.8324 32 1 3.2198 2.7764 4.4679 33 1 2.9846 1.5253 5.7139 34 1 1.5343 2.8269 6.9478 35 1 2.5236 4.1082 6.2277 36 1 -0.3137 3.7474 6.0066 37 1 0.6969 4.9905 5.2082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:06 Heat of formation + Delta-G solvation = -74.163778 kcal Electronic energy + Delta-G solvation = -17943.749700 eV Core-core repulsion = 15231.664476 eV Total energy + Delta-G solvation = -2712.085224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86291 -37.76020 -36.46112 -34.29999 -33.83125 -31.02399 -28.92521 -27.78274 -26.46764 -24.67860 -22.35981 -21.17625 -20.35527 -19.16004 -17.82249 -17.72127 -16.97069 -16.36481 -16.16593 -15.65185 -15.15735 -14.81542 -14.63014 -14.41223 -14.18623 -13.71516 -13.42589 -13.23021 -12.94104 -12.84852 -12.74375 -12.63528 -12.37139 -12.17009 -11.99232 -11.78323 -11.53277 -11.43981 -10.99681 -10.92201 -10.73856 -10.50153 -9.61620 -8.73715 -8.16898 -6.28224 0.45886 1.32694 1.44892 1.46302 1.54933 2.13409 2.35862 2.57638 3.15444 3.47200 3.83371 3.91706 4.10412 4.18415 4.24675 4.40538 4.44775 4.51348 4.61513 4.80697 4.86867 4.99045 5.02379 5.06190 5.10678 5.21959 5.25618 5.39598 5.53285 5.62683 5.67762 5.75745 5.93612 6.11825 6.78609 6.94852 7.35426 7.54391 8.91935 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.033527 B = 0.005749 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.935776 B = 4869.065341 C = 5053.692410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.120 4.120 4 C 0.286 3.714 5 H 0.000 1.000 6 C -0.538 4.538 7 H 0.071 0.929 8 C 0.021 3.979 9 N -0.917 5.917 10 Si 0.961 3.039 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.263 1.263 14 N -0.695 5.695 15 C 0.518 3.482 16 O -0.573 6.573 17 C -0.059 4.059 18 H 0.134 0.866 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.059 4.059 22 S -0.308 6.308 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.402 0.598 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 9.011 13.095 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.115 4.115 3 C -0.178 4.178 4 C 0.182 3.818 5 H 0.018 0.982 6 C -0.576 4.576 7 H 0.089 0.911 8 C -0.180 4.180 9 N -0.555 5.555 10 Si 0.786 3.214 11 H -0.197 1.197 12 H -0.216 1.216 13 H -0.188 1.188 14 N -0.344 5.344 15 C 0.302 3.698 16 O -0.453 6.453 17 C -0.190 4.190 18 H 0.151 0.849 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.207 4.207 22 S -0.083 6.083 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.237 0.763 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.939 9.575 11.596 16.562 hybrid contribution 0.448 -1.448 0.402 1.568 sum -6.492 8.127 11.998 15.879 Atomic orbital electron populations 1.21522 0.94774 1.01020 1.00047 1.21322 0.96156 0.93971 1.00095 1.21737 0.98973 0.97181 0.99881 1.18355 0.92024 0.90866 0.80527 0.98187 1.21424 1.27357 0.93861 1.14988 0.91061 1.25686 0.94286 1.02331 0.95661 1.70130 1.24560 1.38884 1.21956 0.85523 0.77979 0.79124 0.78740 1.19698 1.21610 1.18761 1.46217 1.29752 1.28431 1.29997 1.20131 0.84152 0.80606 0.84883 1.90662 1.27076 1.63362 1.64236 1.24152 0.99517 0.98439 0.96932 0.84854 1.22374 0.97010 0.98644 0.97150 1.21926 0.95978 0.98582 0.99296 1.24162 1.01897 1.02394 0.92238 1.88214 1.66875 1.25176 1.28025 0.93313 0.93772 0.92892 0.92850 0.93391 0.95940 0.93934 0.92754 0.76333 0.91613 0.88756 0.88346 0.88650 0.86759 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.79 71.98 0.63 -4.14 16 2 C -0.10 -4.62 2.64 -10.79 -0.03 -4.64 16 3 C -0.12 -5.61 7.81 71.98 0.56 -5.05 16 4 C 0.29 14.47 1.80 44.25 0.08 14.55 16 5 H 0.00 0.01 7.52 -2.39 -0.02 -0.01 16 6 C -0.54 -27.90 7.66 25.60 0.20 -27.70 16 7 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 8 C 0.02 1.11 5.15 84.66 0.44 1.55 16 9 N -0.92 -53.12 12.16 21.45 0.26 -52.85 16 10 Si 0.96 41.90 29.55 68.60 2.03 43.92 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 14 N -0.70 -28.55 4.03 -446.10 -1.80 -30.35 16 15 C 0.52 20.42 5.65 87.66 0.50 20.92 16 16 O -0.57 -27.35 13.11 -3.06 -0.04 -27.39 16 17 C -0.06 -1.67 3.70 30.59 0.11 -1.56 16 18 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 19 C -0.11 -2.65 5.71 31.31 0.18 -2.48 16 20 C -0.12 -1.80 6.33 30.81 0.19 -1.60 16 21 C -0.06 -0.96 7.38 72.22 0.53 -0.43 16 22 S -0.31 -8.52 22.67 -56.49 -1.28 -9.80 16 23 H 0.05 1.85 7.46 -2.39 -0.02 1.83 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 2.21 7.40 -2.39 -0.02 2.20 16 26 H 0.05 2.94 6.79 -2.39 -0.02 2.92 16 27 H 0.05 2.20 5.63 -2.39 -0.01 2.19 16 28 H 0.02 1.12 7.88 -2.39 -0.02 1.10 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 31 H 0.40 14.22 8.53 -92.70 -0.79 13.43 16 32 H 0.07 1.95 7.30 -2.39 -0.02 1.94 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -66.69 305.15 2.83 -63.86 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.26 Total: 23.19 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 3.39 Total: -10.59 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -1.54 Total: -83.20 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.04 Total: -27.39 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.28 Total: -9.80 kcal Total: -66.69 2.83 -63.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.300 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds