Wall clock time and date at job start Mon Mar 30 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00117 * 2 1 4 4 H 1.48508 * 109.46763 * 270.00069 * 3 2 1 5 5 H 1.48504 * 109.47175 * 29.99288 * 3 2 1 6 6 H 1.48496 * 109.47657 * 149.99907 * 3 2 1 7 7 C 1.38808 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00152 * 0.02562 * 7 2 1 9 9 N 1.36944 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99930 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47298 * 180.02562 * 10 9 7 12 12 C 1.39866 * 125.89915 * 95.01633 * 11 10 9 13 13 C 1.35320 * 107.91898 * 179.97438 * 12 11 10 14 14 N 1.34951 * 107.74569 * 359.97438 * 13 12 11 15 15 C 1.46504 * 126.03463 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46990 * 125.02933 * 15 14 13 17 17 C 1.38232 * 119.99626 * 269.72433 * 16 15 14 18 18 C 1.38237 * 120.00105 * 179.76982 * 17 16 15 19 19 C 1.38232 * 119.99427 * 0.50071 * 18 17 16 20 20 C 1.38229 * 120.00594 * 359.75238 * 19 18 17 21 21 C 1.38236 * 120.00163 * 89.99894 * 16 15 14 22 22 N 1.30844 * 125.89476 * 274.97719 * 11 10 9 23 23 H 0.97001 * 119.99674 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99922 * 0.02562 * 9 7 2 25 25 H 1.08999 * 109.47070 * 59.99939 * 10 9 7 26 26 H 1.09004 * 109.47478 * 300.00397 * 10 9 7 27 27 H 1.07993 * 126.04141 * 359.97438 * 12 11 10 28 28 H 1.07996 * 126.12765 * 180.02562 * 13 12 11 29 29 H 1.09001 * 109.46936 * 245.02312 * 15 14 13 30 30 H 1.08995 * 109.47043 * 5.02520 * 15 14 13 31 31 H 1.08001 * 120.00219 * 359.97438 * 17 16 15 32 32 H 1.07999 * 120.00237 * 180.22768 * 18 17 16 33 33 H 1.08003 * 120.00066 * 179.72803 * 19 18 17 34 34 H 1.08005 * 120.00823 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.99858 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.5938 -2.1955 0.0000 12 6 6.4182 -2.1430 1.1287 13 6 7.6771 -1.8725 0.7125 14 7 7.6502 -1.7584 -0.6319 15 6 8.7979 -1.4695 -1.4954 16 6 8.9176 -2.5419 -2.5474 17 6 9.6845 -3.6660 -2.3043 18 6 9.7905 -4.6519 -3.2674 19 6 9.1379 -4.5089 -4.4776 20 6 8.3753 -3.3824 -4.7227 21 6 8.2651 -2.3988 -3.7577 22 7 6.3312 -1.9649 -1.0560 23 1 -0.4850 0.8401 -0.0004 24 1 3.8647 -0.3620 -0.0004 25 1 3.8485 -3.0426 -0.8897 26 1 3.8492 -3.0423 0.8902 27 1 6.1054 -2.2921 2.1515 28 1 8.5474 -1.7677 1.3431 29 1 8.6557 -0.5022 -1.9773 30 1 9.7074 -1.4462 -0.8952 31 1 10.1982 -3.7755 -1.3606 32 1 10.3867 -5.5319 -3.0760 33 1 9.2243 -5.2771 -5.2318 34 1 7.8658 -3.2704 -5.6684 35 1 7.6693 -1.5187 -3.9491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306737193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:06 Heat of formation + Delta-G solvation = 122.329735 kcal Electronic energy + Delta-G solvation = -17805.894051 eV Core-core repulsion = 14999.178225 eV Total energy + Delta-G solvation = -2806.715826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96054 -39.29239 -35.17070 -33.82203 -31.62345 -31.09067 -30.36753 -29.62221 -27.23671 -25.04978 -22.79830 -22.21423 -21.50455 -20.82930 -19.42192 -17.63437 -17.20745 -16.53521 -15.74026 -15.33328 -14.70328 -14.29223 -14.13289 -13.69848 -13.58853 -13.50650 -13.07907 -12.77893 -12.67940 -12.35638 -12.17576 -11.75811 -11.35062 -11.21997 -11.02287 -10.82374 -10.22701 -10.10430 -9.53776 -9.10268 -9.05200 -8.99001 -8.83400 -8.30366 -7.16313 -5.70505 -3.05382 1.02986 1.23488 2.13236 2.72950 3.12202 3.44538 3.49543 3.50983 3.66598 4.31333 4.51123 4.66645 4.79122 4.81329 4.91937 4.93775 5.13309 5.23276 5.32824 5.43679 5.57584 5.72210 5.76419 5.83542 5.85689 6.05328 6.22217 6.23515 6.32511 6.36990 6.54784 6.71806 6.79017 6.99685 7.21638 8.05166 8.08217 8.48570 9.27385 9.99943 10.20879 11.47861 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.026927 B = 0.004538 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.602851 B = 6168.040212 C = 6448.294904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.093 0.907 9 N -0.748 5.748 10 C 0.234 3.766 11 C 0.076 3.924 12 C -0.256 4.256 13 C 0.040 3.960 14 N -0.378 5.378 15 C 0.178 3.822 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.081 4.081 22 N -0.275 5.275 23 H 0.259 0.741 24 H 0.363 0.637 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.146 0.854 28 H 0.168 0.832 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.506 -6.686 -4.390 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.395 5.395 10 C 0.105 3.895 11 C -0.091 4.091 12 C -0.286 4.286 13 C -0.105 4.105 14 N -0.161 5.161 15 C 0.057 3.943 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.145 4.145 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.100 4.100 22 N -0.097 5.097 23 H 0.069 0.931 24 H 0.196 0.804 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.164 0.836 28 H 0.185 0.815 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 24.425 -6.612 -5.725 25.944 hybrid contribution 0.634 1.152 0.955 1.625 sum 25.059 -5.459 -4.770 26.087 Atomic orbital electron populations 1.69700 1.05030 1.25760 1.57795 1.24614 0.95184 0.97087 1.02060 0.86550 0.79243 0.85036 0.77796 1.21136 1.21717 1.20362 1.19066 0.80295 0.94899 1.42824 0.88943 1.42622 1.03848 1.01856 1.91165 1.19015 0.80863 0.89790 0.99825 1.22838 0.97528 0.98329 0.90401 1.21472 0.92158 1.14761 1.00206 1.22435 0.99754 1.03219 0.85083 1.48669 1.06956 1.55871 1.04569 1.20472 0.85815 0.97225 0.90801 1.19821 0.99254 0.96473 0.95189 1.21005 0.98619 0.93431 0.98989 1.21095 1.00447 0.98913 0.94021 1.21204 0.97025 0.97678 0.97188 1.21189 0.99042 0.94195 0.99601 1.21106 0.96795 0.99357 0.92695 1.77423 0.86874 1.22657 1.22788 0.93093 0.80433 0.94076 0.93465 0.83598 0.81455 0.89210 0.88132 0.86262 0.86048 0.86060 0.85802 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.07 13.97 55.49 0.78 -29.29 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 23.20 27.73 -169.99 -4.71 18.48 16 4 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 7 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 8 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 9 N -0.75 -19.25 5.40 -61.09 -0.33 -19.58 16 10 C 0.23 5.04 6.82 -5.20 -0.04 5.01 16 11 C 0.08 1.47 6.59 -82.41 -0.54 0.93 16 12 C -0.26 -4.12 10.74 -40.01 -0.43 -4.55 16 13 C 0.04 0.52 11.45 -17.22 -0.20 0.33 16 14 N -0.38 -5.47 3.67 -62.54 -0.23 -5.69 16 15 C 0.18 1.86 6.64 -5.19 -0.03 1.82 16 16 C -0.11 -1.19 5.31 -104.62 -0.56 -1.75 16 17 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 18 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 19 C -0.11 -1.09 10.05 -39.59 -0.40 -1.48 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.08 -0.96 9.70 -39.58 -0.38 -1.34 16 22 N -0.28 -5.17 12.41 33.67 0.42 -4.75 16 23 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 24 H 0.36 9.38 5.52 -40.82 -0.23 9.15 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 28 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.10 0.70 8.01 -51.93 -0.42 0.28 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -35.23 307.64 -7.91 -43.14 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.46 Total: 5.96 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -4.01 Total: -12.90 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.63 Total: -59.32 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.71 Total: 18.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.23 -7.91 -43.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306737193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.475 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds