Wall clock time and date at job start Mon Mar 30 2020 04:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00047 * 2 1 4 4 C 1.53007 * 109.46959 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47293 * 64.99493 * 4 3 2 6 6 C 1.37096 * 119.99801 * 90.00069 * 5 4 3 7 7 H 1.08005 * 119.99552 * 226.98903 * 6 5 4 8 8 C 1.38951 * 120.00195 * 46.71480 * 6 5 4 9 9 N 1.31407 * 119.99630 * 6.73257 * 8 6 5 10 10 Si 1.86798 * 119.99914 * 186.73404 * 8 6 5 11 11 H 1.48499 * 109.47217 * 59.99985 * 10 8 6 12 12 H 1.48504 * 109.46890 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47151 * 299.99870 * 10 8 6 14 14 C 1.34775 * 119.99680 * 269.99939 * 5 4 3 15 15 O 1.21285 * 120.00171 * 5.30564 * 14 5 4 16 16 C 1.50697 * 119.99598 * 185.30334 * 14 5 4 17 17 C 1.53006 * 109.82492 * 79.17379 * 16 14 5 18 18 C 1.54381 * 109.83325 * 200.15442 * 16 14 5 19 19 C 1.55304 * 102.25445 * 98.15824 * 18 16 14 20 20 C 1.54943 * 100.93995 * 34.13210 * 19 18 16 21 21 O 1.43240 * 109.83224 * 318.28843 * 16 14 5 22 22 H 1.08998 * 109.47319 * 300.00934 * 1 2 3 23 23 H 1.09000 * 109.47054 * 60.00441 * 1 2 3 24 24 H 1.08999 * 109.46882 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47297 * 59.99452 * 3 2 1 26 26 H 1.09001 * 109.46914 * 299.99226 * 3 2 1 27 27 H 1.08995 * 109.46635 * 304.99097 * 4 3 2 28 28 H 1.09003 * 109.46797 * 184.99558 * 4 3 2 29 29 H 0.97005 * 119.99547 * 185.00263 * 9 8 6 30 30 H 1.09006 * 109.46866 * 60.69795 * 17 16 14 31 31 H 1.09004 * 109.47271 * 180.69928 * 17 16 14 32 32 H 1.08996 * 109.46825 * 300.70429 * 17 16 14 33 33 H 1.08997 * 110.85051 * 216.35161 * 18 16 14 34 34 H 1.09001 * 110.84433 * 339.96801 * 18 16 14 35 35 H 1.09007 * 111.12383 * 276.21774 * 19 18 16 36 36 H 1.08996 * 111.12841 * 152.05749 * 19 18 16 37 37 H 1.09001 * 110.31049 * 204.63930 * 20 19 18 38 38 H 1.09004 * 110.38980 * 82.51642 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2508 6 6 4.2684 1.3459 -2.3384 7 1 3.8765 1.0864 -3.3107 8 6 5.0636 2.4756 -2.1886 9 7 5.6441 2.7222 -1.0358 10 14 5.3071 3.6435 -3.6259 11 1 3.9917 4.1847 -4.0524 12 1 6.1909 4.7622 -3.2104 13 1 5.9320 2.9124 -4.7574 14 6 4.0959 -0.7761 -1.3328 15 8 3.7469 -1.4740 -0.4043 16 6 4.6629 -1.4072 -2.5783 17 6 6.1890 -1.2976 -2.5671 18 6 4.2430 -2.8911 -2.6513 19 6 3.0236 -2.8418 -3.6118 20 6 3.4489 -1.6997 -4.5686 21 8 4.1372 -0.7511 -3.7381 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8465 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 3.8507 0.5686 0.8428 28 1 3.9785 2.1765 0.0901 29 1 6.1393 3.5466 -0.9088 30 1 6.5845 -1.8227 -1.6976 31 1 6.5921 -1.7445 -3.4759 32 1 6.4774 -0.2476 -2.5197 33 1 5.0432 -3.5004 -3.0713 34 1 3.9483 -3.2595 -1.6688 35 1 2.1106 -2.5847 -3.0747 36 1 2.9089 -3.7828 -4.1497 37 1 2.5711 -1.2390 -5.0217 38 1 4.1168 -2.0806 -5.3414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316612654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:51 Heat of formation + Delta-G solvation = -115.336615 kcal Electronic energy + Delta-G solvation = -21324.122085 eV Core-core repulsion = 18167.498602 eV Total energy + Delta-G solvation = -3156.623483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61665 -37.60778 -36.56765 -34.64300 -31.61226 -31.30961 -31.04318 -28.82907 -25.71859 -25.46850 -24.68711 -22.70643 -21.30797 -20.51315 -18.75013 -17.41892 -16.13643 -15.62764 -15.24968 -15.18325 -14.69243 -14.32290 -14.13405 -13.90985 -13.68553 -12.97978 -12.73319 -12.69875 -11.92638 -11.68708 -11.56755 -11.39652 -11.31648 -11.08104 -10.95960 -10.84649 -10.72707 -10.50290 -10.28125 -10.19370 -10.08350 -9.95200 -9.25560 -8.90452 -8.88071 -7.96568 -7.20221 -6.16230 -3.99347 3.23607 3.29129 3.32604 3.97844 4.23965 4.54933 4.63246 4.86549 5.05144 5.22520 5.35808 5.47307 5.71780 5.74254 5.78535 5.91826 6.02243 6.05350 6.10431 6.17428 6.20005 6.27561 6.31187 6.45712 6.47260 6.51054 6.58694 6.75655 6.99714 7.06750 7.33347 7.72856 7.80573 7.97778 8.23407 8.70466 9.27655 9.68281 10.14906 10.83492 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.011961 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.200237 B = 2340.467780 C = 3381.786276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.049 3.951 4 C 0.116 3.884 5 N -0.431 5.431 6 C -0.310 4.310 7 H 0.110 0.890 8 C 0.036 3.964 9 N -0.880 5.880 10 Si 0.915 3.085 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.484 3.516 15 O -0.584 6.584 16 C 0.112 3.888 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.152 4.152 20 C 0.038 3.962 21 O -0.336 6.336 22 H 0.029 0.971 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.266 0.734 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -4.559 -3.697 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.028 4.028 4 C -0.008 4.008 5 N -0.149 5.149 6 C -0.439 4.439 7 H 0.127 0.873 8 C -0.167 4.167 9 N -0.519 5.519 10 Si 0.742 3.258 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.196 1.196 14 C 0.271 3.729 15 O -0.469 6.469 16 C 0.069 3.931 17 C -0.201 4.201 18 C -0.178 4.178 19 C -0.190 4.190 20 C -0.039 4.039 21 O -0.255 6.255 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.184 -4.697 -3.206 7.060 hybrid contribution -0.130 0.859 -0.736 1.139 sum -4.314 -3.839 -3.942 6.992 Atomic orbital electron populations 1.22607 0.83768 1.01447 0.98708 1.88194 1.17122 1.27971 1.95022 1.23136 0.96805 0.84299 0.98583 1.21499 0.89096 1.01926 0.88246 1.43192 1.56995 1.03609 1.11086 1.19981 1.27865 1.06671 0.89342 0.87282 1.25591 0.94264 0.99658 0.97235 1.69802 1.32684 1.25287 1.24103 0.86191 0.78203 0.79586 0.81822 1.20168 1.21315 1.19643 1.20461 0.80712 0.83632 0.88068 1.90523 1.53492 1.62366 1.40497 1.21912 0.94523 0.90737 0.85884 1.21942 0.93259 1.04338 1.00559 1.23104 0.97191 0.95648 1.01883 1.23189 0.99346 0.98826 0.97624 1.23370 0.96158 0.90494 0.93867 1.88867 1.72449 1.31061 1.33082 0.95287 0.95095 0.90746 0.94641 0.93554 0.92366 0.86400 0.92381 0.92426 0.92967 0.89960 0.91210 0.88417 0.90619 0.90961 0.90688 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -8.13 9.27 -48.43 -0.45 -8.58 16 3 C 0.05 1.07 6.28 37.16 0.23 1.30 16 4 C 0.12 2.86 5.42 -4.04 -0.02 2.84 16 5 N -0.43 -11.14 2.45 -114.81 -0.28 -11.42 16 6 C -0.31 -8.04 7.33 -14.93 -0.11 -8.15 16 7 H 0.11 2.86 5.43 -52.48 -0.29 2.58 16 8 C 0.04 0.92 5.22 -17.47 -0.09 0.82 16 9 N -0.88 -23.29 11.27 55.50 0.63 -22.66 16 10 Si 0.91 20.18 29.56 -169.99 -5.03 15.15 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 14 C 0.48 12.26 6.35 -10.99 -0.07 12.19 16 15 O -0.58 -15.83 14.03 -7.65 -0.11 -15.93 16 16 C 0.11 2.40 0.80 -91.05 -0.07 2.33 16 17 C -0.14 -2.91 8.67 37.16 0.32 -2.59 16 18 C -0.14 -2.54 6.02 -24.79 -0.15 -2.69 16 19 C -0.15 -2.43 7.16 -24.48 -0.18 -2.61 16 20 C 0.04 0.64 7.78 38.18 0.30 0.93 16 21 O -0.34 -7.20 7.20 -35.23 -0.25 -7.45 16 22 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.50 7.50 -51.93 -0.39 1.11 16 28 H 0.12 3.00 5.66 -51.93 -0.29 2.70 16 29 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.89 7.48 -51.93 -0.39 1.51 16 33 H 0.07 1.08 7.85 -51.93 -0.41 0.68 16 34 H 0.10 1.93 6.70 -51.93 -0.35 1.59 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -30.12 305.68 -5.51 -35.63 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.90 Total: 4.63 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 1.27 Total: 6.02 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.34 Total: -34.08 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.81 Total: -31.96 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.12 -5.51 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316612654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.704 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds