Wall clock time and date at job start Mon Mar 30 2020 04:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 N 1.46505 * 109.47275 * 120.00564 * 2 1 3 5 5 C 1.34771 * 119.99887 * 154.99709 * 4 2 1 6 6 O 1.21278 * 120.00547 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99821 * 179.97438 * 5 4 2 8 8 S 1.81401 * 109.47355 * 180.02562 * 7 5 4 9 9 C 1.81397 * 103.00062 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47309 * 179.97438 * 9 8 7 11 11 C 1.50691 * 115.55016 * 297.18528 * 10 9 8 12 12 H 1.08005 * 120.00374 * 95.13344 * 11 10 9 13 13 C 1.37878 * 119.99851 * 274.86064 * 11 10 9 14 14 N 1.31510 * 120.00256 * 7.00167 * 13 11 10 15 15 Si 1.86806 * 120.00181 * 187.00455 * 13 11 10 16 16 H 1.48501 * 109.47140 * 59.99587 * 15 13 11 17 17 H 1.48495 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46791 * 299.99924 * 15 13 11 19 19 C 1.52999 * 117.49659 * 82.84993 * 10 9 8 20 20 C 1.52997 * 117.49847 * 151.50792 * 10 9 8 21 21 H 1.08996 * 109.46883 * 299.99576 * 1 2 3 22 22 H 1.08997 * 109.46991 * 59.99862 * 1 2 3 23 23 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 24 24 H 1.09010 * 109.46992 * 240.00233 * 2 1 3 25 25 H 1.08997 * 109.47248 * 299.99980 * 3 2 1 26 26 H 1.09005 * 109.46679 * 60.00604 * 3 2 1 27 27 H 1.08998 * 109.47125 * 180.02562 * 3 2 1 28 28 H 0.96991 * 119.99556 * 334.99638 * 4 2 1 29 29 H 1.09009 * 109.47148 * 60.00357 * 7 5 4 30 30 H 1.09003 * 109.47308 * 300.00447 * 7 5 4 31 31 H 1.09000 * 109.47388 * 60.00490 * 9 8 7 32 32 H 1.08998 * 109.47213 * 300.00071 * 9 8 7 33 33 H 0.96999 * 120.00699 * 181.74528 * 14 13 11 34 34 H 1.08999 * 117.49948 * 215.00628 * 19 10 9 35 35 H 1.09008 * 117.49742 * 0.02600 * 19 10 9 36 36 H 1.08994 * 117.49992 * 359.97438 * 20 10 9 37 37 H 1.08999 * 117.49450 * 144.97578 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2593 1.1942 6 8 3.9358 -1.1988 0.2025 7 6 3.7429 -1.9693 2.4248 8 16 5.4060 -2.6215 2.1098 9 6 5.8321 -3.4275 3.6780 10 6 7.2307 -4.0389 3.5738 11 6 7.3889 -5.1280 2.5444 12 1 7.7572 -4.8891 1.5576 13 6 7.0687 -6.4305 2.8640 14 7 6.4972 -6.7033 4.0166 15 14 7.4468 -7.8077 1.6599 16 1 8.9083 -7.8509 1.4003 17 1 7.0074 -9.1038 2.2364 18 1 6.7246 -7.5631 0.3855 19 6 8.4257 -3.1138 3.8128 20 6 8.0462 -4.1611 4.8626 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9562 0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.4623 -0.7388 1.9893 29 1 3.0703 -2.7914 2.6701 30 1 3.7797 -1.2687 3.2590 31 1 5.1075 -4.2133 3.8913 32 1 5.8161 -2.6908 4.4812 33 1 6.2949 -7.6222 4.2523 34 1 9.3263 -3.2930 3.2254 35 1 8.2154 -2.0697 4.0447 36 1 7.5864 -3.8055 5.7846 37 1 8.6967 -5.0296 4.9661 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379882113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:09 Heat of formation + Delta-G solvation = -24.461926 kcal Electronic energy + Delta-G solvation = -16728.077122 eV Core-core repulsion = 14018.147132 eV Total energy + Delta-G solvation = -2709.929990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62137 -36.52769 -35.97815 -31.99474 -31.89142 -29.10591 -27.51712 -27.44185 -25.25313 -21.84829 -21.08023 -20.53344 -19.18704 -17.03400 -16.50579 -15.97302 -15.38906 -14.92684 -14.58230 -14.40176 -13.76584 -13.69116 -13.34707 -13.21565 -12.74996 -12.57196 -12.46568 -12.15440 -11.78624 -11.55902 -11.30760 -11.14767 -10.93440 -10.83224 -10.44628 -10.15613 -9.77241 -9.57819 -9.21438 -9.14787 -8.77618 -8.39691 -7.95826 -6.70301 -6.00664 -4.04394 2.18324 2.76190 3.26609 3.37464 3.40148 3.45547 3.53981 4.46927 4.60499 4.82992 4.96018 5.03702 5.28708 5.29716 5.33116 5.41192 5.47099 5.51086 5.54616 5.70680 5.90694 5.99911 6.07046 6.24065 6.43154 6.45475 6.56097 6.77195 6.84461 7.09160 7.43966 7.45819 7.51749 7.93610 8.30571 8.44769 8.97129 9.61307 11.08831 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.004626 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.343087 B = 6051.152383 C = 6556.686858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.164 4.164 4 N -0.731 5.731 5 C 0.533 3.467 6 O -0.513 6.513 7 C -0.145 4.145 8 S -0.169 6.169 9 C -0.045 4.045 10 C 0.058 3.942 11 C -0.485 4.485 12 H 0.063 0.937 13 C 0.073 3.927 14 N -0.883 5.883 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.205 4.205 20 C -0.149 4.149 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.398 0.602 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.259 0.741 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 12.344 -1.751 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 C -0.222 4.222 4 N -0.386 5.386 5 C 0.318 3.682 6 O -0.387 6.387 7 C -0.296 4.296 8 S 0.058 5.942 9 C -0.193 4.193 10 C 0.056 3.944 11 C -0.523 4.523 12 H 0.081 0.919 13 C -0.130 4.130 14 N -0.520 5.520 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.243 4.243 20 C -0.189 4.189 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.942 12.320 -3.333 16.811 hybrid contribution -0.969 -0.963 1.189 1.811 sum -11.911 11.357 -2.144 16.596 Atomic orbital electron populations 1.22071 0.94268 1.02643 1.02747 1.20915 0.93760 0.93020 0.89131 1.22192 1.02431 0.95802 1.01801 1.46059 1.17977 1.57771 1.16764 1.19911 0.81145 0.78112 0.88998 1.90737 1.55515 1.58101 1.34371 1.23492 1.03349 1.03291 0.99460 1.87592 1.12516 1.69729 1.24386 1.23207 1.03346 0.99572 0.93223 1.18392 0.84770 0.94958 0.96290 1.20354 1.43976 0.90453 0.97490 0.91929 1.24930 0.94238 0.98549 0.95279 1.69995 1.40692 1.19292 1.22038 0.86707 0.78906 0.81111 0.81665 1.20230 1.21412 1.19953 1.23027 1.01818 0.94250 1.05182 1.22581 1.04678 0.99352 0.92331 0.92148 0.91027 0.91927 0.89394 0.91783 0.92614 0.91863 0.76789 0.87930 0.88389 0.89827 0.93548 0.93106 0.90245 0.91427 0.91924 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.38 37.16 0.35 -0.74 16 2 C 0.14 1.36 3.18 -67.93 -0.22 1.14 16 3 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 4 N -0.73 -8.01 5.08 -53.80 -0.27 -8.28 16 5 C 0.53 8.26 7.81 -10.99 -0.09 8.17 16 6 O -0.51 -10.17 15.53 5.56 0.09 -10.09 16 7 C -0.14 -2.24 6.42 36.00 0.23 -2.01 16 8 S -0.17 -3.61 20.49 -107.50 -2.20 -5.82 16 9 C -0.04 -1.00 5.80 37.16 0.22 -0.79 16 10 C 0.06 1.43 1.36 -155.66 -0.21 1.22 16 11 C -0.48 -13.40 8.40 -34.44 -0.29 -13.69 16 12 H 0.06 1.79 7.82 -52.48 -0.41 1.37 16 13 C 0.07 2.00 5.38 -17.82 -0.10 1.91 16 14 N -0.88 -24.79 12.95 55.43 0.72 -24.07 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 19 C -0.21 -4.58 9.96 -26.70 -0.27 -4.84 16 20 C -0.15 -3.49 9.46 -26.70 -0.25 -3.74 16 21 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.09 1.07 7.58 -51.92 -0.39 0.67 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.40 3.15 8.60 -40.82 -0.35 2.80 16 29 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 30 H 0.10 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.08 2.01 8.14 -51.92 -0.42 1.58 16 32 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -31.45 327.83 -8.23 -39.68 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.21 Total: 1.65 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.27 Total: -14.55 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.44 Total: -32.36 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.20 Total: -5.82 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.45 -8.23 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379882113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.220 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds