Wall clock time and date at job start Mon Mar 30 2020 04:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81401 * 102.99945 * 2 1 4 4 C 1.53002 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46927 * 304.99734 * 4 3 2 6 6 C 1.52998 * 109.47571 * 64.99837 * 4 3 2 7 7 C 1.50697 * 109.47046 * 184.99967 * 4 3 2 8 8 O 1.21282 * 120.00073 * 333.62268 * 7 4 3 9 9 N 1.34780 * 120.00292 * 153.61681 * 7 4 3 10 10 C 1.47017 * 125.64611 * 354.61554 * 9 7 4 11 11 C 1.54323 * 107.27062 * 178.99066 * 10 9 7 12 12 C 1.55149 * 102.94607 * 337.80631 * 11 10 9 13 13 H 1.09004 * 111.00709 * 277.39059 * 12 11 10 14 14 C 1.50694 * 111.00814 * 153.57325 * 12 11 10 15 15 H 1.08000 * 120.00367 * 245.28595 * 14 12 11 16 16 C 1.37876 * 119.99939 * 65.00692 * 14 12 11 17 17 N 1.31512 * 120.00191 * 355.76252 * 16 14 12 18 18 Si 1.86801 * 120.00067 * 175.76508 * 16 14 12 19 19 H 1.48498 * 109.47344 * 94.99449 * 18 16 14 20 20 H 1.48506 * 109.47210 * 214.99280 * 18 16 14 21 21 H 1.48498 * 109.47408 * 334.99428 * 18 16 14 22 22 C 1.47469 * 125.63126 * 174.63090 * 9 7 4 23 23 H 1.09001 * 109.47207 * 300.00009 * 1 2 3 24 24 H 1.09000 * 109.47034 * 60.00168 * 1 2 3 25 25 H 1.09001 * 109.47413 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47308 * 60.00400 * 3 2 1 27 27 H 1.08998 * 109.46921 * 299.99842 * 3 2 1 28 28 H 1.09000 * 109.47259 * 184.59858 * 6 4 3 29 29 H 1.09003 * 109.46602 * 304.60095 * 6 4 3 30 30 H 1.08997 * 109.46790 * 64.59641 * 6 4 3 31 31 H 1.09005 * 109.88480 * 59.57551 * 10 9 7 32 32 H 1.08996 * 109.88526 * 298.41057 * 10 9 7 33 33 H 1.09008 * 110.72351 * 219.44093 * 11 10 9 34 34 H 1.09005 * 110.71759 * 96.17265 * 11 10 9 35 35 H 0.96998 * 120.00547 * 179.97438 * 17 16 14 36 36 H 1.09004 * 110.34285 * 85.23605 * 22 9 7 37 37 H 1.08999 * 110.40539 * 322.90667 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1701 1.3951 0.8410 6 6 4.3173 1.3918 -1.3082 7 6 4.0820 3.4029 0.1232 8 8 3.2972 4.2425 -0.2641 9 7 5.2578 3.7783 0.6644 10 6 6.2475 2.8773 1.2729 11 6 7.4380 3.7462 1.7302 12 6 7.3031 5.0138 0.8459 13 1 7.7459 4.8534 -0.1372 14 6 7.9168 6.2123 1.5224 15 1 7.2928 7.0404 1.8245 16 6 9.2743 6.2493 1.7610 17 7 10.0210 5.2054 1.4745 18 14 10.0528 7.7823 2.4913 19 1 10.1566 7.6308 3.9649 20 1 11.4091 7.9706 1.9164 21 1 9.2119 8.9642 2.1732 22 6 5.7643 5.1610 0.7443 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 5.4057 1.4396 -1.2748 29 1 4.0028 0.3561 -1.4374 30 1 3.9528 1.9891 -2.1439 31 1 6.5834 2.1452 0.5384 32 1 5.8079 2.3693 2.1313 33 1 8.3830 3.2389 1.5355 34 1 7.3463 4.0010 2.7861 35 1 10.9760 5.2314 1.6420 36 1 5.3714 5.6578 1.6314 37 1 5.4947 5.7170 -0.1536 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397585343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:25 Heat of formation + Delta-G solvation = -68.700211 kcal Electronic energy + Delta-G solvation = -17270.923672 eV Core-core repulsion = 14559.075366 eV Total energy + Delta-G solvation = -2711.848306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18022 -38.55195 -35.62434 -34.90922 -32.07820 -30.10473 -29.91215 -28.21095 -27.16191 -24.85741 -23.01900 -21.56315 -19.93441 -18.77329 -18.19682 -16.92087 -16.88166 -16.67944 -16.48004 -15.85449 -15.12086 -14.62378 -14.45282 -14.38902 -14.31898 -14.09895 -13.68285 -13.41157 -13.14535 -12.99336 -12.97319 -12.90112 -12.63436 -12.34147 -12.29076 -12.25193 -11.62834 -11.35255 -11.05281 -10.95869 -10.73832 -10.49370 -9.60286 -8.66254 -8.16323 -6.25635 0.61660 1.42770 1.45235 1.53322 1.55461 1.61602 2.10110 2.44512 3.15559 3.48822 3.61963 3.77930 4.04745 4.20153 4.31263 4.33838 4.36573 4.38313 4.47763 4.49491 4.59350 4.71657 4.78510 4.85115 4.89565 4.91555 5.07838 5.21031 5.26082 5.36946 5.57692 5.77309 5.87361 6.26856 6.60930 6.80135 7.08266 7.42129 8.92833 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.055063 B = 0.003984 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.385732 B = 7026.403977 C = 7236.827053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.273 6.273 3 C -0.060 4.060 4 C -0.081 4.081 5 H 0.113 0.887 6 C -0.137 4.137 7 C 0.528 3.472 8 O -0.591 6.591 9 N -0.612 5.612 10 C 0.102 3.898 11 C -0.101 4.101 12 C 0.040 3.960 13 H 0.013 0.987 14 C -0.536 4.536 15 H 0.054 0.946 16 C 0.022 3.978 17 N -0.911 5.911 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.118 3.882 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.053 0.947 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 -11.963 -1.529 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.047 6.047 3 C -0.209 4.209 4 C -0.103 4.103 5 H 0.131 0.869 6 C -0.194 4.194 7 C 0.316 3.684 8 O -0.472 6.472 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.139 4.139 12 C 0.021 3.979 13 H 0.031 0.969 14 C -0.575 4.575 15 H 0.072 0.928 16 C -0.178 4.178 17 N -0.549 5.549 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.004 4.004 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.136 0.864 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.872 -12.504 -1.752 18.030 hybrid contribution -0.084 2.165 0.362 2.197 sum -12.956 -10.339 -1.390 16.634 Atomic orbital electron populations 1.23487 0.91604 1.07706 1.05738 1.86714 1.10269 1.09655 1.98094 1.23109 0.97319 0.94891 1.05579 1.20983 0.95302 0.90955 1.03074 0.86923 1.21759 1.01307 1.02503 0.93861 1.20761 0.79593 0.91794 0.76251 1.90633 1.49487 1.55180 1.51923 1.48800 1.18482 1.09657 1.57455 1.22311 0.89044 0.92740 0.97916 1.22397 0.95967 0.96415 0.99148 1.19739 0.88573 0.94521 0.95089 0.96932 1.21251 0.93207 1.03384 1.39625 0.92800 1.25645 0.97654 0.98806 0.95736 1.70035 1.06123 1.30187 1.48546 0.85599 0.77723 0.80110 0.78561 1.20032 1.20829 1.19630 1.22280 0.96045 0.82556 0.99557 0.89862 0.89772 0.86351 0.90286 0.89790 0.91530 0.88769 0.92728 0.90164 0.89749 0.91362 0.93142 0.92746 0.92833 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 10.76 113.37 1.22 -0.33 16 2 S -0.27 -5.35 21.11 -56.49 -1.19 -6.55 16 3 C -0.06 -1.42 4.84 71.98 0.35 -1.07 16 4 C -0.08 -2.09 2.30 -11.54 -0.03 -2.11 16 5 H 0.11 2.59 7.26 -2.39 -0.02 2.57 16 6 C -0.14 -3.15 9.07 71.98 0.65 -2.50 16 7 C 0.53 18.57 6.94 87.66 0.61 19.17 16 8 O -0.59 -24.83 16.52 -3.04 -0.05 -24.88 16 9 N -0.61 -22.83 3.33 -811.68 -2.70 -25.53 16 10 C 0.10 3.35 6.08 86.73 0.53 3.88 16 11 C -0.10 -4.27 5.73 31.78 0.18 -4.08 16 12 C 0.04 1.94 2.93 -10.15 -0.03 1.91 16 13 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 14 C -0.54 -28.64 8.51 25.60 0.22 -28.42 16 15 H 0.05 2.86 7.78 -2.91 -0.02 2.84 16 16 C 0.02 1.16 5.38 84.65 0.46 1.61 16 17 N -0.91 -49.93 12.24 21.45 0.26 -49.67 16 18 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.12 5.17 6.33 86.85 0.55 5.72 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 28 H 0.07 1.53 7.67 -2.39 -0.02 1.51 16 29 H 0.09 1.87 6.99 -2.39 -0.02 1.85 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 2.32 7.67 -2.38 -0.02 2.31 16 32 H 0.08 2.32 8.00 -2.39 -0.02 2.30 16 33 H 0.07 3.08 7.62 -2.38 -0.02 3.06 16 34 H 0.05 2.21 8.03 -2.38 -0.02 2.19 16 35 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.05 2.38 8.02 -2.39 -0.02 2.36 16 37 H 0.05 2.19 8.09 -2.39 -0.02 2.17 16 Total: -1.00 -61.27 315.25 4.08 -57.20 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.03 Total: 11.37 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.71 Total: -6.22 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -2.44 Total: -75.20 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.19 Total: -6.55 kcal Total: -61.27 4.08 -57.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.504 kcal (2) G-P(sol) polarization free energy of solvation -61.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds