Wall clock time and date at job start Mon Mar 30 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00232 * 2 1 4 4 C 1.52999 * 109.47556 * 179.97438 * 3 2 1 5 5 C 1.50691 * 109.47549 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00116 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00378 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.62797 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77933 * 233.61094 * 8 7 5 10 10 C 1.53039 * 109.31352 * 305.37066 * 9 8 7 11 11 C 1.53036 * 109.53822 * 61.35882 * 10 9 8 12 12 H 1.08998 * 109.49783 * 58.59132 * 11 10 9 13 13 C 1.50710 * 109.49741 * 178.65236 * 11 10 9 14 14 H 1.07996 * 119.99643 * 35.12334 * 13 11 10 15 15 C 1.37875 * 120.00082 * 215.12694 * 13 11 10 16 16 N 1.31516 * 120.00081 * 184.98615 * 15 13 11 17 17 Si 1.86800 * 119.99906 * 4.98156 * 15 13 11 18 18 H 1.48504 * 109.47179 * 84.79390 * 17 15 13 19 19 H 1.48504 * 109.47032 * 204.79189 * 17 15 13 20 20 H 1.48501 * 109.47490 * 324.79335 * 17 15 13 21 21 C 1.46925 * 120.63311 * 180.02562 * 7 5 4 22 22 H 1.09006 * 109.47112 * 300.00120 * 1 2 3 23 23 H 1.08996 * 109.47088 * 59.99637 * 1 2 3 24 24 H 1.08992 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47104 * 59.99687 * 3 2 1 26 26 H 1.08998 * 109.47314 * 300.00449 * 3 2 1 27 27 H 1.08996 * 109.46813 * 59.99844 * 4 3 2 28 28 H 1.09005 * 109.46972 * 300.00473 * 4 3 2 29 29 H 1.09009 * 109.58452 * 113.82538 * 8 7 5 30 30 H 1.08998 * 109.58489 * 353.40413 * 8 7 5 31 31 H 1.08999 * 109.49787 * 185.41427 * 9 8 7 32 32 H 1.08997 * 109.49158 * 65.31585 * 9 8 7 33 33 H 1.09009 * 109.45370 * 301.34300 * 10 9 8 34 34 H 1.08993 * 109.46020 * 181.38329 * 10 9 8 35 35 H 0.96999 * 120.00142 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.58707 * 6.59644 * 21 7 5 37 37 H 1.09006 * 109.58572 * 246.17314 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 0.0006 5 6 4.0814 3.4082 0.0013 6 8 3.1944 4.2354 0.0017 7 7 5.3702 3.8023 0.0014 8 6 6.4558 2.8121 0.0015 9 6 7.3999 3.1155 1.1691 10 6 7.8736 4.5675 1.0729 11 6 6.6689 5.5063 1.1693 12 1 6.1486 5.3349 2.1116 13 6 7.1397 6.9367 1.1077 14 1 7.9834 7.2012 0.4876 15 6 6.4933 7.9075 1.8431 16 7 6.8403 9.1695 1.7149 17 14 5.1247 7.4301 3.0214 18 1 5.7116 7.0285 4.3251 19 1 4.2182 8.5890 3.2227 20 1 4.3564 6.2934 2.4533 21 6 5.7165 5.2302 0.0026 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8031 2.2371 0.8900 26 1 1.8032 2.2371 -0.8899 27 1 4.1616 1.4702 -0.8891 28 1 4.1609 1.4703 0.8909 29 1 7.0054 2.8724 -0.9380 30 1 6.0382 1.8122 0.1194 31 1 8.2606 2.4482 1.1239 32 1 6.8726 2.9665 2.1113 33 1 8.3791 4.7221 0.1196 34 1 8.5648 4.7787 1.8887 35 1 6.3853 9.8526 2.2320 36 1 4.8113 5.8256 0.1212 37 1 6.2057 5.4883 -0.9368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397588502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:30 Heat of formation + Delta-G solvation = -54.438253 kcal Electronic energy + Delta-G solvation = -17497.558628 eV Core-core repulsion = 14786.328767 eV Total energy + Delta-G solvation = -2711.229861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79428 -37.05951 -33.57120 -32.75452 -31.85824 -30.46995 -29.19905 -25.88653 -25.17735 -23.31614 -21.88676 -19.67421 -18.48408 -17.28363 -16.76185 -15.96621 -15.79820 -15.44715 -14.52348 -14.09561 -13.98538 -13.86544 -13.64670 -13.43075 -13.18171 -12.64846 -12.51067 -12.36783 -12.22557 -12.03209 -11.47311 -11.24172 -11.06497 -10.75188 -10.56117 -10.22645 -10.07939 -9.73205 -9.66662 -9.30830 -9.09831 -8.59476 -8.08397 -7.90463 -6.13251 -4.14250 1.43387 2.36413 2.93075 3.29345 3.39124 3.45512 3.48665 4.41032 4.64227 4.79668 4.83326 4.89505 4.90655 5.12357 5.19341 5.33420 5.39326 5.45420 5.53027 5.60050 5.76896 5.82983 5.99391 6.13651 6.26367 6.40994 6.59317 6.65791 6.77512 6.89094 7.24641 7.34053 7.70557 7.86151 8.44251 8.54068 8.91946 9.50206 10.99274 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.005338 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.495040 B = 5243.822160 C = 5889.370710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.274 6.274 3 C -0.065 4.065 4 C -0.124 4.124 5 C 0.511 3.489 6 O -0.548 6.548 7 N -0.607 5.607 8 C 0.108 3.892 9 C -0.138 4.138 10 C -0.105 4.105 11 C 0.006 3.994 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.075 0.925 15 C 0.076 3.924 16 N -0.895 5.895 17 Si 0.872 3.128 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.260 1.260 21 C 0.113 3.887 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -18.494 -3.141 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.048 6.048 3 C -0.213 4.213 4 C -0.165 4.165 5 C 0.297 3.703 6 O -0.427 6.427 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.176 4.176 10 C -0.143 4.143 11 C -0.014 4.014 12 H 0.052 0.948 13 C -0.553 4.553 14 H 0.094 0.906 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.699 3.301 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.184 1.184 21 C -0.007 4.007 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.370 -18.724 -3.087 20.017 hybrid contribution -1.486 0.903 0.685 1.869 sum -7.856 -17.820 -2.402 19.623 Atomic orbital electron populations 1.23349 0.93799 1.06332 1.05161 1.86693 1.07884 1.12046 1.98172 1.23119 0.98710 0.92904 1.06587 1.21392 0.94835 0.95156 1.05155 1.20360 0.82860 0.90279 0.76837 1.90688 1.46603 1.54672 1.50730 1.48501 1.04713 1.09096 1.71631 1.21726 0.89049 0.91394 0.99372 1.22014 0.98455 0.99240 0.97936 1.21579 0.99263 0.91985 1.01460 1.19458 0.92161 0.95929 0.93872 0.94793 1.20897 1.16449 0.89570 1.28405 0.90647 1.25068 0.96337 0.94776 0.96489 1.69899 1.42201 1.00101 1.41034 0.86920 0.82688 0.78675 0.81813 1.20239 1.21479 1.18417 1.22426 1.00514 0.77143 1.00667 0.90392 0.90397 0.88141 0.89232 0.89211 0.88264 0.88237 0.91458 0.90680 0.91629 0.92129 0.92711 0.92160 0.92502 0.89995 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.76 101.05 1.09 0.14 16 2 S -0.27 -2.96 22.38 -107.50 -2.41 -5.37 16 3 C -0.06 -0.80 5.23 37.16 0.19 -0.60 16 4 C -0.12 -1.55 4.05 -27.89 -0.11 -1.67 16 5 C 0.51 8.92 7.70 -10.99 -0.08 8.84 16 6 O -0.55 -11.81 15.40 5.55 0.09 -11.72 16 7 N -0.61 -10.69 2.97 -172.81 -0.51 -11.20 16 8 C 0.11 1.45 6.34 -3.71 -0.02 1.42 16 9 C -0.14 -1.99 6.08 -26.61 -0.16 -2.15 16 10 C -0.11 -1.95 5.15 -26.69 -0.14 -2.08 16 11 C 0.01 0.13 1.91 -91.69 -0.18 -0.05 16 12 H 0.03 0.82 5.28 -51.93 -0.27 0.54 16 13 C -0.52 -14.05 8.87 -34.44 -0.31 -14.36 16 14 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 17 Si 0.87 22.10 26.99 -169.99 -4.59 17.52 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.26 -6.65 6.82 56.52 0.39 -6.26 16 21 C 0.11 2.44 5.70 -3.75 -0.02 2.41 16 22 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 1.18 8.10 -51.92 -0.42 0.76 16 26 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.10 1.06 7.94 -51.93 -0.41 0.64 16 28 H 0.10 1.12 7.69 -51.93 -0.40 0.73 16 29 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 2.00 7.01 -51.93 -0.36 1.64 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 309.68 15.07 4.67 4.67 Total: -1.00 -31.85 309.68 -7.80 -39.65 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.98 Total: -1.15 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 0.16 Total: -6.01 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.26 Total: -37.59 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.52 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.41 Total: -5.37 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.85 -7.80 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397588502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.785 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds