Wall clock time and date at job start Mon Mar 30 2020 04:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 N 1.32821 * 119.74090 * 173.63035 * 3 2 1 5 5 C 1.31554 * 121.62400 * 180.28565 * 4 3 2 6 6 C 1.38511 * 120.91392 * 359.75488 * 5 4 3 7 7 C 1.38655 * 119.37579 * 359.97438 * 6 5 4 8 8 C 1.38530 * 118.51110 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.47480 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.47271 * 265.91881 * 9 8 7 11 11 C 1.48563 * 110.99953 * 75.67599 * 10 9 8 12 12 C 1.54383 * 104.59143 * 200.95705 * 11 10 9 13 13 C 1.54262 * 105.05911 * 23.85257 * 12 11 10 14 14 H 1.09000 * 110.32360 * 240.99703 * 13 12 11 15 15 C 1.50707 * 110.32558 * 118.89532 * 13 12 11 16 16 H 1.07997 * 119.99632 * 241.45209 * 15 13 12 17 17 C 1.37874 * 119.99895 * 61.45222 * 15 13 12 18 18 N 1.31523 * 120.00147 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99955 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46803 * 60.00104 * 19 17 15 21 21 H 1.48501 * 109.47202 * 299.99903 * 19 17 15 22 22 H 1.48502 * 109.47375 * 180.02562 * 19 17 15 23 23 C 1.48552 * 110.99970 * 320.25121 * 10 9 8 24 24 H 1.07999 * 119.54504 * 179.72698 * 5 4 3 25 25 H 1.07999 * 120.31327 * 179.97438 * 6 5 4 26 26 H 1.08003 * 120.74035 * 179.97438 * 7 6 5 27 27 H 1.08994 * 109.47274 * 145.91490 * 9 8 7 28 28 H 1.09008 * 109.46948 * 25.91937 * 9 8 7 29 29 H 1.08997 * 110.41794 * 82.18350 * 11 10 9 30 30 H 1.08999 * 110.51031 * 319.78143 * 11 10 9 31 31 H 1.08988 * 110.32839 * 264.95475 * 12 11 10 32 32 H 1.09004 * 110.40667 * 142.78514 * 12 11 10 33 33 H 0.96999 * 119.99568 * 0.02562 * 18 17 15 34 34 H 1.09001 * 110.41002 * 40.26413 * 23 10 9 35 35 H 1.09002 * 110.41309 * 277.81752 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2264 1.1471 -0.1279 5 6 4.5412 1.1900 -0.1383 6 6 5.2919 0.0331 -0.0102 7 6 4.6453 -1.1852 0.1313 8 6 3.2601 -1.2015 0.1400 9 6 2.5120 -2.5009 0.2918 10 7 2.1765 -3.0308 -1.0366 11 6 3.3711 -3.6255 -1.6897 12 6 3.0283 -3.6323 -3.1950 13 6 1.9704 -2.5234 -3.3702 14 1 1.0389 -2.9451 -3.7479 15 6 2.4791 -1.4578 -4.3067 16 1 2.5995 -0.4435 -3.9560 17 6 2.7906 -1.7779 -5.6111 18 7 2.6443 -3.0133 -6.0380 19 14 3.4204 -0.4570 -6.7720 20 1 4.6797 0.1164 -6.2327 21 1 2.4023 0.6165 -6.8995 22 1 3.6795 -1.0537 -8.1070 23 6 1.7628 -1.9399 -1.9561 24 1 5.0421 2.1404 -0.2487 25 1 6.3709 0.0795 -0.0203 26 1 5.2089 -2.1009 0.2325 27 1 1.5956 -2.3288 0.8563 28 1 3.1362 -3.2197 0.8227 29 1 3.5332 -4.6423 -1.3323 30 1 4.2530 -3.0126 -1.5035 31 1 2.6156 -4.5985 -3.4850 32 1 3.9149 -3.4067 -3.7877 33 1 2.3169 -3.6991 -5.4352 34 1 2.3919 -1.0616 -1.8112 35 1 0.7141 -1.6876 -1.7991 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397603417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:44 Heat of formation + Delta-G solvation = 54.354661 kcal Electronic energy + Delta-G solvation = -19180.637594 eV Core-core repulsion = 16370.974147 eV Total energy + Delta-G solvation = -2809.663446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.98605 -39.66248 -37.76709 -35.99820 -33.97697 -33.20156 -31.26058 -29.98790 -27.40019 -25.94172 -25.69117 -23.68300 -21.76175 -21.44813 -20.31989 -19.07159 -17.85509 -17.13085 -16.80699 -16.45445 -15.83707 -15.74731 -15.47058 -15.08297 -14.62717 -14.40899 -14.19963 -14.10463 -13.93805 -13.62403 -13.58375 -12.96055 -12.79471 -12.54045 -12.32894 -12.22418 -11.98735 -11.86531 -11.42744 -10.88234 -10.74583 -10.63151 -10.46446 -10.00184 -9.52739 -8.61629 -6.34834 -0.49360 0.17043 1.34728 1.49618 1.57088 1.73006 1.76791 2.42080 2.53987 2.79979 3.07773 3.17747 3.49307 3.64343 3.85275 3.93325 3.99117 4.10444 4.24526 4.35543 4.40700 4.44163 4.58029 4.70175 4.73365 4.82275 4.98310 5.03445 5.10235 5.13748 5.34897 5.54889 5.58492 5.65344 6.01053 6.11075 6.16613 6.18811 6.63699 6.72171 7.45174 8.77409 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.007929 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.101894 B = 3530.457578 C = 3885.661683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.279 3.721 3 C 0.168 3.832 4 N -0.483 5.483 5 C 0.097 3.903 6 C -0.125 4.125 7 C -0.068 4.068 8 C -0.120 4.120 9 C 0.076 3.924 10 N -0.509 5.509 11 C 0.043 3.957 12 C -0.105 4.105 13 C 0.022 3.978 14 H -0.019 1.019 15 C -0.603 4.603 16 H 0.035 0.965 17 C -0.025 4.025 18 N -0.932 5.932 19 Si 1.107 2.893 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.050 3.950 24 H 0.200 0.800 25 H 0.189 0.811 26 H 0.178 0.822 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.357 3.217 15.096 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.038 4.038 3 C 0.031 3.969 4 N -0.194 5.194 5 C -0.063 4.063 6 C -0.144 4.144 7 C -0.093 4.093 8 C -0.126 4.126 9 C -0.052 4.052 10 N -0.230 5.230 11 C -0.085 4.085 12 C -0.144 4.144 13 C 0.003 3.997 14 H -0.001 1.001 15 C -0.641 4.641 16 H 0.053 0.947 17 C -0.224 4.224 18 N -0.569 5.569 19 Si 0.929 3.071 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.077 4.077 24 H 0.216 0.784 25 H 0.206 0.794 26 H 0.195 0.805 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.181 3.831 13.573 16.828 hybrid contribution 0.120 -0.362 1.104 1.168 sum 9.301 3.469 14.677 17.718 Atomic orbital electron populations 1.81175 1.12631 1.08128 1.08819 1.25447 0.92541 0.92631 0.93150 1.16340 0.85326 0.91145 1.04090 1.67472 1.12826 1.27417 1.11646 1.23477 0.87206 1.01385 0.94194 1.22910 1.04118 0.91948 0.95473 1.21972 0.91689 1.00993 0.94693 1.21558 0.96573 0.95548 0.98963 1.21601 0.99724 0.91562 0.92346 1.65711 1.29922 1.25446 1.01964 1.23169 0.91776 1.00573 0.92951 1.22274 0.99045 0.97354 0.95722 1.19511 0.93398 0.94409 0.92376 1.00090 1.22202 1.48200 0.95300 0.98409 0.94674 1.27099 0.94955 1.01390 0.98955 1.70886 1.44228 1.02347 1.39416 0.83063 0.77026 0.72571 0.74425 1.18877 1.20683 1.20652 1.23181 0.98048 0.93624 0.92881 0.78380 0.79359 0.80513 0.90500 0.85262 0.88098 0.92159 0.94510 0.93515 0.92703 0.93216 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -17.12 18.23 19.00 0.35 -16.77 16 2 C 0.28 10.18 11.64 88.33 1.03 11.21 16 3 C 0.17 5.28 4.98 40.52 0.20 5.48 16 4 N -0.48 -14.09 10.28 -189.22 -1.94 -16.03 16 5 C 0.10 1.91 11.18 84.80 0.95 2.86 16 6 C -0.12 -1.87 10.11 22.43 0.23 -1.64 16 7 C -0.07 -1.23 8.51 22.44 0.19 -1.03 16 8 C -0.12 -3.09 3.83 -19.51 -0.07 -3.16 16 9 C 0.08 1.98 5.49 85.56 0.47 2.45 16 10 N -0.51 -17.86 5.65 -886.05 -5.01 -22.87 16 11 C 0.04 1.41 6.29 86.45 0.54 1.95 16 12 C -0.11 -4.77 5.03 31.49 0.16 -4.61 16 13 C 0.02 1.16 2.65 -10.64 -0.03 1.14 16 14 H -0.02 -1.13 8.04 -2.39 -0.02 -1.15 16 15 C -0.60 -34.44 8.37 25.60 0.21 -34.23 16 16 H 0.03 2.03 7.58 -2.91 -0.02 2.01 16 17 C -0.02 -1.43 5.09 84.65 0.43 -0.99 16 18 N -0.93 -56.52 13.27 21.45 0.28 -56.24 16 19 Si 1.11 50.39 29.90 68.60 2.05 52.44 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C 0.05 2.23 4.27 86.45 0.37 2.60 16 24 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 25 H 0.19 1.15 8.06 -2.91 -0.02 1.12 16 26 H 0.18 2.01 7.72 -2.91 -0.02 1.99 16 27 H 0.08 2.11 7.26 -2.39 -0.02 2.09 16 28 H 0.13 2.32 7.93 -2.38 -0.02 2.30 16 29 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 1.75 5.98 -2.39 -0.01 1.74 16 31 H 0.04 1.68 7.92 -2.39 -0.02 1.66 16 32 H 0.05 2.31 7.23 -2.39 -0.02 2.29 16 33 H 0.26 16.03 6.00 -92.71 -0.56 15.48 16 34 H 0.05 2.20 4.09 -2.39 -0.01 2.19 16 35 H 0.04 1.86 7.04 -2.39 -0.02 1.85 16 Total: -1.00 -74.42 287.16 1.73 -72.69 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.32 Total: 4.77 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.68 Total: -17.99 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -6.32 Total: -111.91 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -74.42 1.73 -72.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397603417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.046 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds