Wall clock time and date at job start Mon Mar 30 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39945 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00388 * 341.71916 * 7 2 1 9 9 C 1.41392 * 120.00071 * 161.71500 * 7 2 1 10 10 C 1.40716 * 120.24802 * 330.23912 * 9 7 2 11 11 C 1.37610 * 119.74899 * 179.69783 * 10 9 7 12 12 C 1.38632 * 120.24865 * 0.27687 * 11 10 9 13 13 C 1.50706 * 119.74902 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47193 * 89.99972 * 13 12 11 15 15 C 1.34947 * 126.03800 * 125.00384 * 14 13 12 16 16 C 1.35307 * 107.74986 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.04423 * 180.02562 * 16 15 14 18 18 N 1.46895 * 109.47393 * 89.99214 * 17 16 15 19 19 C 1.39876 * 107.92187 * 359.97438 * 16 15 14 20 20 N 1.30839 * 108.19482 * 359.74600 * 19 16 15 21 21 C 1.38636 * 120.50095 * 359.97438 * 12 11 10 22 22 C 1.37614 * 120.24893 * 359.97438 * 21 12 11 23 23 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 24 24 H 1.08005 * 120.11915 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.87748 * 180.30093 * 11 10 9 26 26 H 1.09001 * 109.46772 * 210.00435 * 13 12 11 27 27 H 1.09000 * 109.46651 * 329.99885 * 13 12 11 28 28 H 1.08004 * 126.12258 * 359.94802 * 15 14 13 29 29 H 1.09004 * 109.47104 * 209.99571 * 17 16 15 30 30 H 1.09003 * 109.46927 * 329.99503 * 17 16 15 31 31 H 1.00904 * 111.00193 * 179.97438 * 18 17 16 32 32 H 1.00893 * 111.00345 * 303.96013 * 18 17 16 33 33 H 1.07998 * 125.90512 * 179.97438 * 19 16 15 34 34 H 1.08002 * 119.87220 * 179.97438 * 21 12 11 35 35 H 1.07997 * 120.12752 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2924 9 6 3.3682 -1.2428 -0.3847 10 6 3.8633 -0.3107 -1.3154 11 6 5.1905 -0.3461 -1.6773 12 6 6.0376 -1.2990 -1.1330 13 6 7.4890 -1.3279 -1.5378 14 7 8.2650 -0.4747 -0.6345 15 6 9.3448 -0.8518 0.0817 16 6 9.7691 0.2232 0.7853 17 6 10.9489 0.2605 1.7221 18 7 12.1563 0.6358 0.9744 19 6 8.9198 1.2944 0.4886 20 7 8.0214 0.8786 -0.3668 21 6 5.5597 -2.2256 -0.2193 22 6 4.2364 -2.2083 0.1580 23 1 -0.4850 0.8401 -0.0004 24 1 3.2050 0.4326 -1.7406 25 1 5.5737 0.3715 -2.3877 26 1 7.8616 -2.3507 -1.4813 27 1 7.5886 -0.9609 -2.5593 28 1 9.7902 -1.8357 0.0917 29 1 10.7658 0.9932 2.5081 30 1 11.0894 -0.7239 2.1687 31 1 12.9619 0.6682 1.5810 32 1 12.3116 0.0083 0.1997 33 1 8.9952 2.2931 0.8926 34 1 6.2285 -2.9638 0.1981 35 1 3.8663 -2.9307 0.8703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399039270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:08 Heat of formation + Delta-G solvation = 90.615282 kcal Electronic energy + Delta-G solvation = -18006.452888 eV Core-core repulsion = 15198.361820 eV Total energy + Delta-G solvation = -2808.091068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87736 -37.95858 -35.04621 -34.04354 -32.75777 -30.46073 -29.80320 -29.53057 -27.13545 -24.45001 -23.51004 -21.68926 -20.90935 -20.08594 -19.70841 -17.49027 -16.81581 -15.78362 -15.60306 -15.16054 -14.57222 -14.26047 -13.93605 -13.87210 -13.66773 -13.30215 -12.85390 -12.59873 -12.38522 -12.03632 -11.98958 -11.51227 -11.45992 -10.83150 -10.77190 -10.29745 -10.24362 -9.94998 -9.61943 -9.18656 -9.05290 -8.79105 -8.12825 -7.76610 -7.64060 -7.02911 -4.56930 2.18451 2.35539 2.66607 3.02253 3.06791 3.16157 3.24524 3.36199 3.96928 4.42817 4.68511 4.87612 4.98170 5.20075 5.34183 5.36074 5.46930 5.58730 5.72146 5.84204 5.95510 6.09210 6.14197 6.26516 6.50967 6.76979 6.82453 6.93903 7.03450 7.10259 7.34473 7.36135 7.37774 7.48813 7.69322 7.81741 8.05258 8.10956 8.27881 8.58303 8.72739 9.98546 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.004991 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.890759 B = 5608.818313 C = 6011.164279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.242 1.242 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.101 3.899 10 C -0.242 4.242 11 C -0.037 4.037 12 C -0.247 4.247 13 C 0.192 3.808 14 N -0.350 5.350 15 C 0.051 3.949 16 C -0.250 4.250 17 C 0.145 3.855 18 N -0.848 5.848 19 C 0.048 3.952 20 N -0.279 5.279 21 C -0.061 4.061 22 C -0.214 4.214 23 H 0.287 0.713 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.163 0.837 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.336 0.664 32 H 0.338 0.662 33 H 0.174 0.826 34 H 0.090 0.910 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.080 -0.862 0.761 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.471 4.471 8 H 0.109 0.891 9 C 0.098 3.902 10 C -0.262 4.262 11 C -0.056 4.056 12 C -0.249 4.249 13 C 0.074 3.926 14 N -0.131 5.131 15 C -0.098 4.098 16 C -0.263 4.263 17 C 0.014 3.986 18 N -0.378 5.378 19 C -0.138 4.138 20 N -0.100 5.100 21 C -0.080 4.080 22 C -0.233 4.233 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.180 0.820 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.191 0.809 34 H 0.108 0.892 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.287 0.122 -0.177 15.288 hybrid contribution 1.188 -0.471 0.818 1.518 sum 16.475 -0.349 0.641 16.491 Atomic orbital electron populations 1.69694 1.08174 1.30501 1.34259 1.26196 0.94723 1.01939 0.90640 0.86295 0.81436 0.79440 0.79027 1.19519 1.21751 1.16506 1.19574 0.93273 0.96147 1.38088 0.89051 1.17765 0.92893 0.90603 0.88960 1.21005 0.95617 1.05028 1.04514 1.20401 0.93188 0.95037 0.96945 1.18867 0.92636 1.04210 1.09172 1.20432 0.89629 0.91508 0.91068 1.49252 1.21544 1.08076 1.34208 1.22261 0.91410 0.99727 0.96411 1.19811 1.03454 0.93943 1.09076 1.19879 0.86939 0.98309 0.93493 1.58747 1.05593 1.59351 1.14120 1.23656 0.93331 0.99574 0.97245 1.77456 1.22422 0.91202 1.18896 1.20435 0.95310 0.96614 0.95620 1.20955 0.93027 1.04343 1.05018 0.90273 0.88157 0.88769 0.89411 0.90409 0.81983 0.90661 0.95548 0.85224 0.84953 0.80878 0.89156 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.40 13.93 55.55 0.77 -20.63 16 2 C 0.08 2.24 5.40 -17.34 -0.09 2.15 16 3 Si 0.91 21.46 24.52 -169.99 -4.17 17.29 16 4 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.24 -6.02 6.86 56.52 0.39 -5.64 16 7 C -0.44 -12.01 9.57 -37.74 -0.36 -12.37 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 9 C 0.10 2.58 5.11 -106.82 -0.55 2.03 16 10 C -0.24 -5.93 7.18 -38.88 -0.28 -6.21 16 11 C -0.04 -0.81 9.67 -39.66 -0.38 -1.20 16 12 C -0.25 -4.94 5.34 -104.33 -0.56 -5.50 16 13 C 0.19 3.04 6.62 -5.19 -0.03 3.00 16 14 N -0.35 -5.81 3.67 -62.55 -0.23 -6.04 16 15 C 0.05 0.69 11.36 -17.23 -0.20 0.50 16 16 C -0.25 -3.43 5.61 -105.05 -0.59 -4.02 16 17 C 0.14 1.53 7.27 -4.98 -0.04 1.49 16 18 N -0.85 -7.96 9.61 -11.41 -0.11 -8.07 16 19 C 0.05 0.77 11.96 -17.36 -0.21 0.56 16 20 N -0.28 -5.24 12.41 30.63 0.38 -4.86 16 21 C -0.06 -1.25 9.67 -39.66 -0.38 -1.64 16 22 C -0.21 -4.97 9.80 -38.87 -0.38 -5.35 16 23 H 0.29 6.92 8.30 -40.82 -0.34 6.58 16 24 H 0.10 2.47 4.73 -52.48 -0.25 2.22 16 25 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 26 H 0.09 1.11 8.01 -51.93 -0.42 0.69 16 27 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 28 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.34 2.37 9.08 -39.29 -0.36 2.01 16 32 H 0.34 2.95 8.98 -39.30 -0.35 2.60 16 33 H 0.17 2.35 8.06 -52.49 -0.42 1.92 16 34 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -29.95 301.18 -7.21 -37.16 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.35 Total: 7.17 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -4.05 Total: -26.56 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.81 Total: -39.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.17 Total: 17.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.95 -7.21 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399039270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.779 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds