Wall clock time and date at job start Mon Mar 30 2020 04:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48495 * 109.47222 * 275.41275 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.41328 * 3 2 1 6 6 H 1.48504 * 109.47122 * 155.41333 * 3 2 1 7 7 C 1.39945 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00388 * 341.71916 * 7 2 1 9 9 C 1.41392 * 120.00071 * 161.71500 * 7 2 1 10 10 C 1.40716 * 120.24802 * 330.23912 * 9 7 2 11 11 C 1.37610 * 119.74899 * 179.69783 * 10 9 7 12 12 C 1.38632 * 120.24865 * 0.27687 * 11 10 9 13 13 C 1.50706 * 119.74902 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47193 * 89.99972 * 13 12 11 15 15 C 1.34947 * 126.03800 * 125.00384 * 14 13 12 16 16 C 1.35307 * 107.74986 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.04423 * 180.02562 * 16 15 14 18 18 N 1.46895 * 109.47393 * 89.99214 * 17 16 15 19 19 C 1.39876 * 107.92187 * 359.97438 * 16 15 14 20 20 N 1.30839 * 108.19482 * 359.74600 * 19 16 15 21 21 C 1.38636 * 120.50095 * 359.97438 * 12 11 10 22 22 C 1.37614 * 120.24893 * 359.97438 * 21 12 11 23 23 H 0.97002 * 119.99654 * 0.02562 * 1 2 3 24 24 H 1.08005 * 120.11915 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.87748 * 180.30093 * 11 10 9 26 26 H 1.09001 * 109.46772 * 210.00435 * 13 12 11 27 27 H 1.09000 * 109.46651 * 329.99885 * 13 12 11 28 28 H 1.08004 * 126.12258 * 359.94802 * 15 14 13 29 29 H 1.09004 * 109.47104 * 209.99571 * 17 16 15 30 30 H 1.09003 * 109.46927 * 329.99503 * 17 16 15 31 31 H 1.00904 * 111.00193 * 179.97438 * 18 17 16 32 32 H 1.00893 * 111.00345 * 303.96013 * 18 17 16 33 33 H 1.07998 * 125.90512 * 179.97438 * 19 16 15 34 34 H 1.08002 * 119.87220 * 179.97438 * 21 12 11 35 35 H 1.07997 * 120.12752 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4097 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5087 -2.1239 0.2924 9 6 3.3682 -1.2428 -0.3847 10 6 3.8633 -0.3107 -1.3154 11 6 5.1905 -0.3461 -1.6773 12 6 6.0376 -1.2990 -1.1330 13 6 7.4890 -1.3279 -1.5378 14 7 8.2650 -0.4747 -0.6345 15 6 9.3448 -0.8518 0.0817 16 6 9.7691 0.2232 0.7853 17 6 10.9489 0.2605 1.7221 18 7 12.1563 0.6358 0.9744 19 6 8.9198 1.2944 0.4886 20 7 8.0214 0.8786 -0.3668 21 6 5.5597 -2.2256 -0.2193 22 6 4.2364 -2.2083 0.1580 23 1 -0.4850 0.8401 -0.0004 24 1 3.2050 0.4326 -1.7406 25 1 5.5737 0.3715 -2.3877 26 1 7.8616 -2.3507 -1.4813 27 1 7.5886 -0.9609 -2.5593 28 1 9.7902 -1.8357 0.0917 29 1 10.7658 0.9932 2.5081 30 1 11.0894 -0.7239 2.1687 31 1 12.9619 0.6682 1.5810 32 1 12.3116 0.0083 0.1997 33 1 8.9952 2.2931 0.8926 34 1 6.2285 -2.9638 0.1981 35 1 3.8663 -2.9307 0.8703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399039270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:07 Heat of formation + Delta-G solvation = 70.077889 kcal Electronic energy + Delta-G solvation = -18007.343456 eV Core-core repulsion = 15198.361820 eV Total energy + Delta-G solvation = -2808.981636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01754 -39.71699 -36.20469 -35.53932 -34.24108 -32.01799 -31.56801 -30.64335 -28.60108 -25.81651 -24.72291 -23.44641 -22.41860 -21.45348 -20.88850 -19.41480 -17.92770 -17.49157 -16.69525 -16.42283 -15.87919 -15.71826 -15.55863 -15.11565 -14.92417 -14.62425 -14.40059 -14.13951 -13.84109 -13.60522 -13.23019 -13.15328 -12.70124 -12.60278 -12.46360 -12.09153 -11.79530 -11.50616 -11.36928 -11.05097 -10.26709 -9.56026 -9.54581 -9.48426 -9.16251 -8.98371 -6.57062 0.58639 0.84293 1.14124 1.20293 1.31885 1.41951 1.87656 1.96363 2.05946 2.57916 3.45449 3.73050 4.02742 4.07057 4.10494 4.21952 4.32853 4.36126 4.41259 4.53175 4.63064 4.68803 4.94547 4.97620 5.00866 5.06710 5.26081 5.28032 5.54694 5.67538 5.82811 5.85297 5.95947 6.19087 6.27975 6.35517 6.38957 6.67297 6.75936 6.77955 6.94249 8.10011 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.004991 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.890759 B = 5608.818313 C = 6011.164279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.054 3.946 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.079 3.921 10 C -0.256 4.256 11 C -0.050 4.050 12 C -0.220 4.220 13 C 0.192 3.808 14 N -0.364 5.364 15 C 0.058 3.942 16 C -0.253 4.253 17 C 0.149 3.851 18 N -0.857 5.857 19 C 0.038 3.962 20 N -0.336 5.336 21 C -0.058 4.058 22 C -0.227 4.227 23 H 0.295 0.705 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.205 0.795 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.350 0.650 32 H 0.343 0.657 33 H 0.184 0.816 34 H 0.132 0.868 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.185 -1.439 0.702 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.161 4.161 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.077 3.923 10 C -0.276 4.276 11 C -0.068 4.068 12 C -0.222 4.222 13 C 0.073 3.927 14 N -0.145 5.145 15 C -0.089 4.089 16 C -0.265 4.265 17 C 0.018 3.982 18 N -0.388 5.388 19 C -0.148 4.148 20 N -0.158 5.158 21 C -0.077 4.077 22 C -0.247 4.247 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.150 0.850 27 H 0.107 0.893 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.201 0.799 34 H 0.150 0.850 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.406 -0.450 -0.231 19.413 hybrid contribution 0.280 -0.385 0.808 0.938 sum 19.686 -0.835 0.577 19.713 Atomic orbital electron populations 1.69709 1.08922 1.31488 1.36848 1.26691 0.95237 1.03791 0.90394 0.85523 0.79194 0.77210 0.79302 1.18680 1.20052 1.18917 1.19542 0.94681 0.95677 1.41470 0.92065 1.17915 0.92693 0.91995 0.89718 1.21092 0.96838 1.04918 1.04714 1.20702 0.92537 0.96088 0.97506 1.19448 0.95064 1.01499 1.06170 1.20571 0.86602 0.93984 0.91531 1.49082 1.22721 1.07520 1.35212 1.22933 0.90034 1.01335 0.94620 1.20189 1.03909 0.93202 1.09183 1.19855 0.86216 0.99357 0.92784 1.58674 1.05886 1.59643 1.14644 1.24058 0.93278 1.00820 0.96619 1.77393 1.24513 0.92879 1.20980 1.20854 0.94564 0.97258 0.95012 1.21205 0.94286 1.03932 1.05230 0.89454 0.89080 0.87247 0.85000 0.89305 0.77836 0.90751 0.93763 0.83656 0.84400 0.79868 0.84978 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.16 13.93 21.83 0.30 -46.85 16 2 C 0.05 3.00 5.40 85.26 0.46 3.46 16 3 Si 0.96 45.72 24.52 68.60 1.68 47.40 16 4 H -0.26 -11.87 6.71 99.48 0.67 -11.20 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -13.37 6.86 99.48 0.68 -12.69 16 7 C -0.48 -27.80 9.57 23.46 0.22 -27.57 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 C 0.08 4.15 5.11 -21.29 -0.11 4.05 16 10 C -0.26 -12.65 7.18 22.73 0.16 -12.49 16 11 C -0.05 -2.11 9.67 22.22 0.21 -1.90 16 12 C -0.22 -8.09 5.34 -19.67 -0.11 -8.20 16 13 C 0.19 5.13 6.62 85.64 0.57 5.70 16 14 N -0.36 -10.61 3.67 -351.80 -1.29 -11.90 16 15 C 0.06 1.31 11.36 83.54 0.95 2.26 16 16 C -0.25 -6.00 5.61 -20.14 -0.11 -6.12 16 17 C 0.15 2.57 7.27 85.56 0.62 3.19 16 18 N -0.86 -13.03 9.61 -190.01 -1.83 -14.85 16 19 C 0.04 1.13 11.96 85.24 1.02 2.15 16 20 N -0.34 -11.90 12.41 -57.02 -0.71 -12.61 16 21 C -0.06 -2.22 9.67 22.22 0.21 -2.00 16 22 C -0.23 -10.46 9.80 22.73 0.22 -10.23 16 23 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 24 H 0.09 4.58 4.73 -2.91 -0.01 4.57 16 25 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 26 H 0.13 2.41 8.01 -2.39 -0.02 2.39 16 27 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 28 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.35 3.73 9.08 -89.69 -0.81 2.91 16 32 H 0.34 4.67 8.98 -89.70 -0.81 3.86 16 33 H 0.18 4.72 8.06 -2.91 -0.02 4.69 16 34 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -68.06 301.18 1.93 -66.13 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -0.56 Total: 20.39 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 4.33 Total: -47.71 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.52 Total: -86.22 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.68 Total: 47.40 kcal Total: -68.06 1.93 -66.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399039270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.211 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds