Wall clock time and date at job start Mon Mar 30 2020 04:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00015 * 2 1 4 4 H 1.48502 * 109.46852 * 270.00167 * 3 2 1 5 5 H 1.48502 * 109.47029 * 29.99985 * 3 2 1 6 6 H 1.48495 * 109.47150 * 150.00103 * 3 2 1 7 7 C 1.37877 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00829 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99494 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.46932 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00335 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47745 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47320 * 64.99738 * 12 11 10 14 14 C 1.46898 * 111.00105 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47310 * 35.00001 * 14 13 12 16 16 C 1.50702 * 109.47305 * 275.00086 * 14 13 12 17 17 O 1.20832 * 119.99603 * 359.97438 * 16 14 13 18 18 O 1.34224 * 120.00519 * 180.02562 * 16 14 13 19 19 C 1.53002 * 109.47325 * 154.99880 * 14 13 12 20 20 C 1.53781 * 113.61609 * 179.97438 * 19 14 13 21 21 C 1.53781 * 87.08070 * 139.98229 * 20 19 14 22 22 C 1.53786 * 87.17350 * 334.52830 * 21 20 19 23 23 H 0.96997 * 119.99749 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47411 * 59.99904 * 9 7 2 25 25 H 1.09001 * 109.47021 * 299.99559 * 9 7 2 26 26 H 1.09004 * 109.46937 * 59.99514 * 11 10 9 27 27 H 1.09001 * 109.47145 * 299.99775 * 11 10 9 28 28 H 1.09007 * 109.46543 * 304.99833 * 12 11 10 29 29 H 1.08997 * 109.47704 * 185.00089 * 12 11 10 30 30 H 1.00902 * 111.00128 * 303.95559 * 13 12 11 31 31 H 0.96694 * 117.00167 * 179.97438 * 18 16 14 32 32 H 1.09003 * 112.90345 * 48.74761 * 19 14 13 33 33 H 1.08999 * 113.61181 * 25.43284 * 20 19 14 34 34 H 1.08998 * 113.61680 * 254.52836 * 20 19 14 35 35 H 1.09002 * 113.61445 * 89.11830 * 21 20 19 36 36 H 1.09002 * 113.61408 * 219.93560 * 21 20 19 37 37 H 1.08992 * 113.61675 * 140.02412 * 22 21 20 38 38 H 1.09000 * 113.60973 * 270.92699 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0013 11 6 5.4124 -2.6542 -0.0003 12 6 5.8070 -4.1324 -0.0025 13 7 5.3688 -4.7543 -1.2591 14 6 5.7310 -6.1775 -1.2964 15 1 5.6528 -6.5987 -0.2942 16 6 7.1463 -6.3227 -1.7934 17 8 7.7873 -5.3414 -2.0868 18 8 7.6945 -7.5423 -1.9110 19 6 4.7812 -6.9210 -2.2376 20 6 5.0769 -8.4260 -2.3486 21 6 3.5549 -8.6457 -2.3399 22 6 3.4434 -7.3124 -1.5817 23 1 -0.4849 0.8400 0.0004 24 1 3.8746 -0.6808 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 5.8145 -2.1717 0.8907 27 1 5.8159 -2.1696 -0.8893 28 1 5.3304 -4.6368 0.8382 29 1 6.8897 -4.2196 0.0879 30 1 4.3770 -4.6302 -1.3974 31 1 8.6048 -7.5850 -2.2343 32 1 4.6666 -6.4265 -3.2023 33 1 5.5824 -8.8372 -1.4749 34 1 5.5536 -8.7093 -3.2870 35 1 3.1047 -8.6226 -3.3324 36 1 3.2417 -9.5093 -1.7532 37 1 2.6023 -6.6974 -1.9013 38 1 3.5031 -7.4198 -0.4987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399112902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:22 Heat of formation + Delta-G solvation = -119.351497 kcal Electronic energy + Delta-G solvation = -19354.008688 eV Core-core repulsion = 16197.211107 eV Total energy + Delta-G solvation = -3156.797582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59774 -38.74713 -37.29110 -36.20378 -34.98538 -32.63630 -30.44493 -28.00621 -26.49876 -25.60586 -24.24625 -21.94233 -21.65405 -20.91420 -19.54530 -18.16612 -16.88694 -16.84163 -16.09901 -15.82708 -15.64261 -15.03221 -14.92997 -14.40741 -14.21565 -13.81936 -13.35993 -12.99972 -12.55127 -12.45936 -12.32354 -12.12269 -11.85658 -11.63186 -11.42610 -11.08525 -10.88065 -10.73028 -10.67108 -10.55236 -10.31554 -10.17976 -9.86484 -9.19337 -8.85470 -8.47327 -8.42880 -6.12311 -4.11299 2.22655 2.90035 3.25853 3.32650 3.34569 4.00961 4.35840 4.43213 4.46125 4.66878 4.68040 4.81487 4.97757 5.14118 5.19736 5.28719 5.43800 5.57517 5.61322 5.63559 5.66343 5.80499 5.90509 5.92839 6.02756 6.07848 6.20338 6.32786 6.45550 6.62697 6.93196 7.01569 7.45778 7.59728 7.94111 7.99968 8.65240 8.97851 9.47323 11.00661 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.004373 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.927639 B = 6401.490375 C = 7241.668906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.385 6.385 11 C 0.059 3.941 12 C 0.067 3.933 13 N -0.667 5.667 14 C 0.110 3.890 15 H 0.081 0.919 16 C 0.478 3.522 17 O -0.495 6.495 18 O -0.519 6.519 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.143 4.143 22 C -0.136 4.136 23 H 0.266 0.734 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.371 0.629 31 H 0.403 0.597 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.028 -17.112 -3.097 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.019 4.019 12 C -0.062 4.062 13 N -0.303 5.303 14 C -0.002 4.002 15 H 0.098 0.902 16 C 0.318 3.682 17 O -0.380 6.380 18 O -0.331 6.331 19 C -0.131 4.131 20 C -0.161 4.161 21 C -0.180 4.180 22 C -0.174 4.174 23 H 0.076 0.924 24 H 0.020 0.980 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.194 0.806 31 H 0.262 0.738 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.046 -16.617 -3.378 21.394 hybrid contribution 0.630 0.931 0.402 1.194 sum 13.675 -15.686 -2.975 21.022 Atomic orbital electron populations 1.69874 1.06064 1.27106 1.50394 1.24757 0.94792 0.98769 0.94594 0.86850 0.80330 0.83738 0.78840 1.19873 1.20812 1.19114 1.20880 0.88262 0.95265 1.51250 0.90013 1.20582 0.96060 0.79384 0.94418 1.87820 1.17657 1.29824 1.95130 1.22338 0.84779 0.94837 0.99900 1.22037 0.99862 0.94584 0.89732 1.59936 1.24112 1.09821 1.36444 1.21052 0.88370 0.91328 0.99463 0.90174 1.23643 0.89770 0.80153 0.74620 1.90710 1.62830 1.39581 1.44867 1.84572 1.34720 1.33840 1.79952 1.22802 0.95226 0.95652 0.99467 1.22872 0.96155 0.94248 1.02796 1.22813 0.96610 0.97735 1.00883 1.23044 0.96892 0.97382 1.00054 0.92368 0.98018 0.98236 0.93798 0.93093 0.94289 0.90447 0.80570 0.73843 0.87773 0.89425 0.91354 0.90118 0.91333 0.90385 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.33 9.99 -34.44 -0.34 -15.67 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.17 4.35 4.76 36.01 0.17 4.52 16 10 O -0.38 -8.78 9.85 -35.23 -0.35 -9.13 16 11 C 0.06 1.07 6.28 37.16 0.23 1.31 16 12 C 0.07 1.01 5.80 -3.83 -0.02 0.99 16 13 N -0.67 -9.89 5.84 -107.95 -0.63 -10.52 16 14 C 0.11 1.29 2.37 -68.86 -0.16 1.13 16 15 H 0.08 0.86 7.60 -51.93 -0.39 0.47 16 16 C 0.48 5.85 7.48 36.01 0.27 6.12 16 17 O -0.49 -7.88 16.68 -18.76 -0.31 -8.19 16 18 O -0.52 -4.45 11.57 -39.24 -0.45 -4.90 16 19 C -0.11 -1.15 3.12 -89.67 -0.28 -1.43 16 20 C -0.12 -1.04 6.08 -25.92 -0.16 -1.20 16 21 C -0.14 -1.19 8.07 -25.92 -0.21 -1.40 16 22 C -0.14 -1.34 7.58 -25.77 -0.20 -1.53 16 23 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 25 H 0.00 0.00 7.57 -51.93 -0.39 -0.39 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.56 8.06 -51.92 -0.42 0.14 16 29 H 0.08 1.10 7.62 -51.93 -0.40 0.71 16 30 H 0.37 5.84 7.85 -39.29 -0.31 5.53 16 31 H 0.40 1.91 9.10 45.56 0.41 2.32 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 0.72 7.72 -51.93 -0.40 0.32 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 LS Contribution 317.17 15.07 4.78 4.78 Total: -1.00 -33.60 317.17 -6.89 -40.49 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.23 Total: 2.53 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.80 Total: -5.13 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.14 Total: -37.31 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.11 Total: -22.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.60 -6.89 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399112902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.866 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds