Wall clock time and date at job start Mon Mar 30 2020 05:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 C 1.52993 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.55365 * 55.12745 * 4 3 2 6 6 C 1.53300 * 109.51375 * 175.25354 * 4 3 2 7 7 N 1.47156 * 108.38541 * 172.22470 * 6 4 3 8 8 C 1.34778 * 120.97923 * 129.48482 * 7 6 4 9 9 O 1.21686 * 120.00316 * 354.75025 * 8 7 6 10 10 C 1.46375 * 119.99797 * 174.75289 * 8 7 6 11 11 H 1.08001 * 119.99991 * 4.99846 * 10 8 7 12 12 C 1.40045 * 119.99865 * 185.00705 * 10 8 7 13 13 N 1.30667 * 119.99966 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99710 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47260 * 59.99711 * 14 12 10 16 16 H 1.48506 * 109.46801 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47071 * 299.99263 * 14 12 10 18 18 C 1.47155 * 118.03546 * 309.46736 * 7 6 4 19 19 C 1.53289 * 108.38522 * 50.53343 * 18 7 6 20 20 C 1.53003 * 109.51362 * 187.77279 * 19 18 7 21 21 C 1.53002 * 109.55494 * 67.64726 * 19 18 7 22 22 O 1.42958 * 109.51202 * 295.00117 * 4 3 2 23 23 H 1.09002 * 109.46955 * 60.00322 * 1 2 3 24 24 H 1.09004 * 109.46906 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46769 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46915 * 59.99596 * 3 2 1 27 27 H 1.09006 * 109.47325 * 300.00203 * 3 2 1 28 28 H 1.08996 * 109.68033 * 52.50361 * 6 4 3 29 29 H 1.09002 * 109.68292 * 291.94867 * 6 4 3 30 30 H 0.97006 * 120.00096 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.67475 * 290.81026 * 18 7 6 32 32 H 1.08993 * 109.70845 * 170.27588 * 18 7 6 33 33 H 1.08996 * 109.47243 * 179.74377 * 20 19 18 34 34 H 1.08996 * 109.46984 * 299.75162 * 20 19 18 35 35 H 1.09003 * 109.46777 * 59.74610 * 20 19 18 36 36 H 1.09001 * 109.47296 * 300.22449 * 21 19 18 37 37 H 1.08994 * 109.47172 * 60.23264 * 21 19 18 38 38 H 1.08998 * 109.47165 * 180.22738 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8531 0.5703 -0.8418 6 6 4.1596 2.5798 -0.1189 7 7 5.6135 2.4557 0.0720 8 6 6.4776 3.0003 -0.8072 9 8 6.0622 3.5222 -1.8250 10 6 7.9159 2.9641 -0.5379 11 1 8.2907 2.4312 0.3234 12 6 8.8060 3.6205 -1.3971 13 7 8.3525 4.2650 -2.4394 14 14 10.6414 3.5748 -1.0529 15 1 11.1111 2.1661 -1.0579 16 1 11.3611 4.3398 -2.1028 17 1 10.9113 4.1819 0.2751 18 6 6.0958 1.7197 1.2515 19 6 5.3774 0.3667 1.3043 20 6 5.7121 -0.3388 2.6200 21 6 5.8325 -0.5010 0.1291 22 8 3.9660 0.5795 1.2221 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8465 -0.8900 28 1 3.7435 3.2349 0.6464 29 1 3.9529 2.9910 -1.1070 30 1 8.9690 4.7194 -3.0347 31 1 5.8746 2.2884 2.1547 32 1 7.1712 1.5615 1.1715 33 1 5.1973 -1.2987 2.6588 34 1 6.7882 -0.5007 2.6819 35 1 5.3893 0.2807 3.4568 36 1 5.5952 0.0029 -0.8079 37 1 6.9084 -0.6630 0.1923 38 1 5.3178 -1.4611 0.1656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408058010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:30 Heat of formation + Delta-G solvation = -123.148971 kcal Electronic energy + Delta-G solvation = -20518.732290 eV Core-core repulsion = 17361.770038 eV Total energy + Delta-G solvation = -3156.962252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71437 -37.63015 -36.73368 -33.65145 -33.35416 -32.40949 -29.95080 -27.46446 -27.06076 -26.18678 -25.50106 -24.07775 -21.59282 -19.73528 -18.87300 -16.79428 -16.44431 -16.29956 -15.71005 -15.40411 -15.11191 -14.54966 -14.29285 -14.21206 -13.55326 -13.51546 -12.82208 -12.47229 -12.40660 -11.94979 -11.88119 -11.61089 -11.50222 -11.40015 -11.34778 -11.19268 -10.96105 -10.91466 -10.65403 -10.30451 -10.14038 -9.85368 -9.61458 -9.31050 -8.87868 -7.66392 -7.22804 -6.24993 -4.70247 3.12395 3.17641 3.19024 3.74601 3.92904 4.07127 4.48020 4.51219 5.13004 5.19008 5.27506 5.32228 5.37535 5.38916 5.46464 5.52433 5.62856 5.68285 5.69864 5.87978 5.91861 5.98999 6.06023 6.14641 6.24779 6.39073 6.41991 6.47693 6.50804 6.72077 7.20663 7.39842 7.47745 7.68546 8.05037 8.27379 8.96709 9.34997 10.51109 10.69592 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029149 B = 0.006095 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.365863 B = 4593.029759 C = 5261.241310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.073 3.927 4 C 0.079 3.921 5 H 0.070 0.930 6 C 0.096 3.904 7 N -0.641 5.641 8 C 0.561 3.439 9 O -0.577 6.577 10 C -0.543 4.543 11 H 0.072 0.928 12 C 0.088 3.912 13 N -0.767 5.767 14 Si 0.907 3.093 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.267 1.267 18 C 0.103 3.897 19 C 0.096 3.904 20 C -0.132 4.132 21 C -0.169 4.169 22 O -0.369 6.369 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.270 0.730 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 -7.525 7.352 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.004 4.004 4 C 0.020 3.980 5 H 0.088 0.912 6 C -0.029 4.029 7 N -0.380 5.380 8 C 0.368 3.632 9 O -0.459 6.459 10 C -0.579 4.579 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.731 3.269 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.022 4.022 19 C 0.056 3.944 20 C -0.190 4.190 21 C -0.226 4.226 22 O -0.289 6.289 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.286 -7.308 6.737 12.940 hybrid contribution 0.801 0.290 0.042 0.853 sum -7.485 -7.018 6.778 12.297 Atomic orbital electron populations 1.22714 0.81621 1.02432 0.99745 1.87952 1.19089 1.27774 1.95361 1.22512 0.92193 0.84914 1.00775 1.22473 0.91772 0.95074 0.88674 0.91185 1.21661 0.84087 0.94345 1.02762 1.48232 1.03607 1.59495 1.26622 1.18257 0.86372 0.77307 0.81285 1.90592 1.78967 1.49110 1.27262 1.20901 0.89512 1.35564 1.11922 0.90992 1.25721 1.00311 0.93337 0.93819 1.69998 1.35780 1.23552 1.10222 0.86444 0.82587 0.79054 0.78787 1.19188 1.20504 1.19201 1.22098 1.00363 0.90678 0.89072 1.21953 0.81526 0.95141 0.95811 1.21681 1.01473 1.00356 0.95452 1.22282 1.01724 0.99342 0.99297 1.87908 1.22268 1.81289 1.37414 0.94285 0.89903 0.94241 0.92551 0.91755 0.93130 0.88918 0.91962 0.93198 0.88278 0.92084 0.91046 0.92065 0.91622 0.91537 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.81 10.67 -39.98 -0.43 -6.23 16 3 C 0.07 1.08 5.60 37.15 0.21 1.29 16 4 C 0.08 1.41 2.67 -26.58 -0.07 1.34 16 5 H 0.07 1.35 6.25 -51.93 -0.32 1.02 16 6 C 0.10 1.94 5.94 -3.53 -0.02 1.92 16 7 N -0.64 -14.76 2.54 -173.94 -0.44 -15.21 16 8 C 0.56 15.84 7.63 -12.99 -0.10 15.74 16 9 O -0.58 -18.46 14.51 5.20 0.08 -18.38 16 10 C -0.54 -14.96 8.86 -35.63 -0.32 -15.28 16 11 H 0.07 1.80 5.76 -52.49 -0.30 1.50 16 12 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 13 N -0.77 -22.67 11.84 55.55 0.66 -22.01 16 14 Si 0.91 19.75 29.56 -169.99 -5.02 14.72 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 C 0.10 1.98 5.18 -3.54 -0.02 1.96 16 19 C 0.10 1.62 1.11 -90.47 -0.10 1.52 16 20 C -0.13 -1.77 8.85 37.16 0.33 -1.45 16 21 C -0.17 -2.89 8.09 37.16 0.30 -2.59 16 22 O -0.37 -6.68 9.83 -39.98 -0.39 -7.07 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 2.01 7.06 -51.93 -0.37 1.64 16 30 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.95 5.50 -51.93 -0.29 1.66 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.30 6.12 -51.93 -0.32 0.98 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -33.95 307.40 -5.50 -39.44 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.80 Total: 1.88 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 1.23 Total: 8.22 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.22 Total: -37.22 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.74 Total: -31.68 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.95 -5.50 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408058010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.706 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds