Wall clock time and date at job start Mon Mar 30 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 C 1.52993 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.55365 * 55.12745 * 4 3 2 6 6 C 1.53300 * 109.51375 * 175.25354 * 4 3 2 7 7 N 1.47156 * 108.38541 * 172.22470 * 6 4 3 8 8 C 1.34778 * 120.97923 * 129.48482 * 7 6 4 9 9 O 1.21686 * 120.00316 * 354.75025 * 8 7 6 10 10 C 1.46375 * 119.99797 * 174.75289 * 8 7 6 11 11 H 1.08001 * 119.99991 * 4.99846 * 10 8 7 12 12 C 1.40045 * 119.99865 * 185.00705 * 10 8 7 13 13 N 1.30667 * 119.99966 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99710 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47260 * 59.99711 * 14 12 10 16 16 H 1.48506 * 109.46801 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47071 * 299.99263 * 14 12 10 18 18 C 1.47155 * 118.03546 * 309.46736 * 7 6 4 19 19 C 1.53289 * 108.38522 * 50.53343 * 18 7 6 20 20 C 1.53003 * 109.51362 * 187.77279 * 19 18 7 21 21 C 1.53002 * 109.55494 * 67.64726 * 19 18 7 22 22 O 1.42958 * 109.51202 * 295.00117 * 4 3 2 23 23 H 1.09002 * 109.46955 * 60.00322 * 1 2 3 24 24 H 1.09004 * 109.46906 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46769 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46915 * 59.99596 * 3 2 1 27 27 H 1.09006 * 109.47325 * 300.00203 * 3 2 1 28 28 H 1.08996 * 109.68033 * 52.50361 * 6 4 3 29 29 H 1.09002 * 109.68292 * 291.94867 * 6 4 3 30 30 H 0.97006 * 120.00096 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.67475 * 290.81026 * 18 7 6 32 32 H 1.08993 * 109.70845 * 170.27588 * 18 7 6 33 33 H 1.08996 * 109.47243 * 179.74377 * 20 19 18 34 34 H 1.08996 * 109.46984 * 299.75162 * 20 19 18 35 35 H 1.09003 * 109.46777 * 59.74610 * 20 19 18 36 36 H 1.09001 * 109.47296 * 300.22449 * 21 19 18 37 37 H 1.08994 * 109.47172 * 60.23264 * 21 19 18 38 38 H 1.08998 * 109.47165 * 180.22738 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8531 0.5703 -0.8418 6 6 4.1596 2.5798 -0.1189 7 7 5.6135 2.4557 0.0720 8 6 6.4776 3.0003 -0.8072 9 8 6.0622 3.5222 -1.8250 10 6 7.9159 2.9641 -0.5379 11 1 8.2907 2.4312 0.3234 12 6 8.8060 3.6205 -1.3971 13 7 8.3525 4.2650 -2.4394 14 14 10.6414 3.5748 -1.0529 15 1 11.1111 2.1661 -1.0579 16 1 11.3611 4.3398 -2.1028 17 1 10.9113 4.1819 0.2751 18 6 6.0958 1.7197 1.2515 19 6 5.3774 0.3667 1.3043 20 6 5.7121 -0.3388 2.6200 21 6 5.8325 -0.5010 0.1291 22 8 3.9660 0.5795 1.2221 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8465 -0.8900 28 1 3.7435 3.2349 0.6464 29 1 3.9529 2.9910 -1.1070 30 1 8.9690 4.7194 -3.0347 31 1 5.8746 2.2884 2.1547 32 1 7.1712 1.5615 1.1715 33 1 5.1973 -1.2987 2.6588 34 1 6.7882 -0.5007 2.6819 35 1 5.3893 0.2807 3.4568 36 1 5.5952 0.0029 -0.8079 37 1 6.9084 -0.6630 0.1923 38 1 5.3178 -1.4611 0.1656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408058010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:29 Heat of formation + Delta-G solvation = -147.742673 kcal Electronic energy + Delta-G solvation = -20519.798753 eV Core-core repulsion = 17361.770038 eV Total energy + Delta-G solvation = -3158.028715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25157 -38.97992 -38.47788 -35.21759 -35.05842 -34.46402 -31.36422 -29.07388 -28.34381 -27.67371 -26.92352 -25.63780 -22.98031 -21.53881 -20.46529 -18.64339 -17.97639 -17.60517 -17.45507 -16.68802 -16.35371 -16.11832 -15.88063 -15.84132 -15.19080 -14.80491 -14.51099 -14.07779 -13.78321 -13.37503 -13.26925 -13.13165 -12.91215 -12.88793 -12.75148 -12.68956 -12.44412 -12.34647 -12.08769 -12.03631 -11.95922 -11.33411 -10.96494 -10.83734 -10.63898 -9.84233 -9.07736 -8.31202 -6.86501 1.40079 1.43186 1.54823 2.20567 2.41472 2.52310 2.60329 2.93922 3.55065 3.80370 3.91882 3.98122 4.00776 4.13995 4.18606 4.38772 4.42095 4.50797 4.57212 4.59250 4.62256 4.73439 4.83359 4.85649 4.86173 4.93695 4.99233 5.06114 5.23747 5.34686 5.38670 5.66587 6.05459 6.16855 6.27589 6.31154 6.85582 7.34301 8.41691 8.64303 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029149 B = 0.006095 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.365863 B = 4593.029759 C = 5261.241310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.079 3.921 4 C 0.088 3.912 5 H 0.049 0.951 6 C 0.095 3.905 7 N -0.645 5.645 8 C 0.544 3.456 9 O -0.630 6.630 10 C -0.566 4.566 11 H 0.094 0.906 12 C 0.030 3.970 13 N -0.822 5.822 14 Si 0.995 3.005 15 H -0.253 1.253 16 H -0.276 1.276 17 H -0.252 1.252 18 C 0.099 3.901 19 C 0.095 3.905 20 C -0.125 4.125 21 C -0.164 4.164 22 O -0.370 6.370 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.274 0.726 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -8.824 9.575 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.002 3.998 4 C 0.029 3.971 5 H 0.067 0.933 6 C -0.029 4.029 7 N -0.382 5.382 8 C 0.351 3.649 9 O -0.518 6.518 10 C -0.602 4.602 11 H 0.112 0.888 12 C -0.185 4.185 13 N -0.451 5.451 14 Si 0.814 3.186 15 H -0.176 1.176 16 H -0.201 1.201 17 H -0.176 1.176 18 C -0.025 4.025 19 C 0.055 3.945 20 C -0.182 4.182 21 C -0.221 4.221 22 O -0.290 6.290 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.830 -8.646 9.019 14.745 hybrid contribution 0.537 0.666 -0.637 1.067 sum -7.293 -7.980 8.382 13.679 Atomic orbital electron populations 1.22959 0.79207 1.03948 1.00970 1.87893 1.21699 1.27657 1.95611 1.22415 0.89885 0.85393 1.02077 1.22310 0.93902 0.92781 0.88135 0.93316 1.21755 0.82861 0.96382 1.01882 1.48078 1.04411 1.58872 1.26796 1.18661 0.87659 0.77208 0.81355 1.90540 1.80047 1.51543 1.29645 1.21422 0.89744 1.36051 1.12952 0.88779 1.26985 1.06459 0.92093 0.92979 1.70179 1.38286 1.24848 1.11792 0.85112 0.74574 0.79811 0.79123 1.17645 1.20092 1.17593 1.22324 1.00491 0.91858 0.87786 1.22111 0.80775 0.93892 0.97749 1.21686 1.02928 1.00467 0.93162 1.22242 1.02499 0.99711 0.97689 1.87926 1.22869 1.80998 1.37173 0.93116 0.88333 0.92922 0.91103 0.90568 0.91499 0.91408 0.91572 0.91842 0.88680 0.90952 0.89140 0.91132 0.95254 0.90674 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.72 16 2 O -0.41 -11.80 10.67 -144.44 -1.54 -13.34 16 3 C 0.08 2.26 5.60 71.98 0.40 2.67 16 4 C 0.09 3.13 2.67 30.69 0.08 3.22 16 5 H 0.05 1.95 6.25 -2.39 -0.01 1.93 16 6 C 0.10 3.94 5.94 86.35 0.51 4.45 16 7 N -0.64 -30.34 2.54 -822.43 -2.09 -32.43 16 8 C 0.54 31.86 7.63 86.36 0.66 32.52 16 9 O -0.63 -42.57 14.51 -4.30 -0.06 -42.64 16 10 C -0.57 -31.60 8.86 24.83 0.22 -31.38 16 11 H 0.09 4.65 5.76 -2.91 -0.02 4.63 16 12 C 0.03 1.66 5.50 85.30 0.47 2.13 16 13 N -0.82 -50.13 11.84 21.83 0.26 -49.87 16 14 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 15 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 16 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 18 C 0.10 3.72 5.18 86.35 0.45 4.17 16 19 C 0.09 3.06 1.11 -10.70 -0.01 3.05 16 20 C -0.13 -2.95 8.85 71.98 0.64 -2.31 16 21 C -0.16 -5.50 8.09 71.98 0.58 -4.92 16 22 O -0.37 -12.86 9.83 -144.44 -1.42 -14.28 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.07 3.12 7.06 -2.39 -0.02 3.10 16 30 H 0.27 15.21 8.29 -92.70 -0.77 14.44 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.10 3.63 5.50 -2.39 -0.01 3.62 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 1.18 6.12 -2.39 -0.01 1.16 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.48 307.40 3.47 -73.01 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 1.04 Total: 22.00 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.25 Total: 15.32 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.83 Total: -82.30 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: -3.02 Total: -70.26 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -76.48 3.47 -73.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408058010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.729 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds