Wall clock time and date at job start Mon Mar 30 2020 05:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00080 * 2 1 4 4 C 1.53004 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50998 * 305.10192 * 4 3 2 6 6 C 1.53290 * 109.51089 * 185.00152 * 4 3 2 7 7 N 1.47157 * 108.38410 * 187.77556 * 6 4 3 8 8 C 1.34776 * 120.98022 * 230.51340 * 7 6 4 9 9 O 1.21686 * 120.00245 * 355.35113 * 8 7 6 10 10 C 1.46379 * 119.99756 * 175.35360 * 8 7 6 11 11 H 1.07991 * 120.00024 * 7.58946 * 10 8 7 12 12 C 1.40050 * 119.99359 * 187.59245 * 10 8 7 13 13 N 1.30667 * 120.00557 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 119.99543 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47341 * 59.99581 * 14 12 10 16 16 H 1.48494 * 109.47254 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47333 * 300.00052 * 14 12 10 18 18 C 1.47150 * 118.03419 * 50.53020 * 7 6 4 19 19 C 1.53294 * 108.38615 * 309.46703 * 18 7 6 20 20 C 1.53000 * 109.51391 * 172.23057 * 19 18 7 21 21 C 1.53004 * 109.51281 * 292.33019 * 19 18 7 22 22 O 1.42951 * 109.50899 * 65.20112 * 4 3 2 23 23 H 1.09005 * 109.47037 * 300.00443 * 1 2 3 24 24 H 1.09003 * 109.46764 * 60.00018 * 1 2 3 25 25 H 1.08993 * 109.47783 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47558 * 60.00002 * 3 2 1 27 27 H 1.09004 * 109.46825 * 299.99642 * 3 2 1 28 28 H 1.08991 * 109.68688 * 68.05168 * 6 4 3 29 29 H 1.09000 * 109.67980 * 307.49177 * 6 4 3 30 30 H 0.97000 * 119.99664 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.68000 * 189.74411 * 18 7 6 32 32 H 1.08999 * 109.68649 * 69.19605 * 18 7 6 33 33 H 1.08996 * 109.47276 * 180.10449 * 20 19 18 34 34 H 1.09005 * 109.46574 * 300.10449 * 20 19 18 35 35 H 1.09001 * 109.47277 * 60.09595 * 20 19 18 36 36 H 1.09006 * 109.46768 * 299.89486 * 21 19 18 37 37 H 1.08992 * 109.47023 * 59.89778 * 21 19 18 38 38 H 1.09003 * 109.46885 * 179.90176 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8514 0.5670 0.8414 6 6 4.1595 2.5791 0.1266 7 7 5.6136 2.4557 -0.0631 8 6 6.4767 2.9968 0.8193 9 8 6.0601 3.6696 1.7437 10 6 7.9155 2.7751 0.6657 11 1 8.2948 2.2839 -0.2181 12 6 8.7999 3.2000 1.6650 13 7 8.3410 3.7947 2.7341 14 14 10.6359 2.9165 1.4693 15 1 11.1163 3.6091 0.2467 16 1 11.3490 3.4539 2.6558 17 1 10.9021 1.4604 1.3500 18 6 6.0973 1.7245 -1.2450 19 6 5.3788 0.3717 -1.3040 20 6 5.7151 -0.3285 -2.6222 21 6 5.8336 -0.5001 -0.1318 22 8 3.9673 0.5833 -1.2223 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8463 -0.8901 28 1 3.9517 2.9863 1.1160 29 1 3.7443 3.2373 -0.6366 30 1 8.9537 4.0892 3.4260 31 1 7.1727 1.5659 -1.1637 32 1 5.8772 2.2967 -2.1462 33 1 5.2025 -1.2895 -2.6643 34 1 5.3909 0.2932 -3.4568 35 1 6.7916 -0.4878 -2.6847 36 1 6.9102 -0.6596 -0.1939 37 1 5.5937 -0.0008 0.8068 38 1 5.3210 -1.4612 -0.1735 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408058011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:31 Heat of formation + Delta-G solvation = -147.566798 kcal Electronic energy + Delta-G solvation = -20549.290976 eV Core-core repulsion = 17391.269887 eV Total energy + Delta-G solvation = -3158.021089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24973 -38.98372 -38.47895 -35.21747 -35.06081 -34.46259 -31.35548 -29.07903 -28.33430 -27.67074 -26.92241 -25.63856 -22.97903 -21.54621 -20.45182 -18.64308 -17.97354 -17.61258 -17.45386 -16.67252 -16.36427 -16.14002 -15.89032 -15.83423 -15.19243 -14.79434 -14.43672 -14.12823 -13.79298 -13.38040 -13.23509 -13.16235 -12.91434 -12.87437 -12.74179 -12.68332 -12.44092 -12.34739 -12.07408 -12.02464 -11.95864 -11.33516 -10.95149 -10.85411 -10.63969 -9.83671 -9.08158 -8.31488 -6.85981 1.40045 1.43134 1.54728 2.20117 2.42053 2.51606 2.60496 2.94398 3.56030 3.80669 3.91986 3.97883 4.00809 4.14931 4.18896 4.37645 4.42547 4.51429 4.57212 4.59587 4.63056 4.73895 4.83447 4.85688 4.87004 4.94138 4.99962 5.06640 5.25333 5.35198 5.39552 5.66487 6.05694 6.16990 6.27936 6.31029 6.85862 7.34135 8.41458 8.64293 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.006216 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.999579 B = 4503.420475 C = 5136.211773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.079 3.921 4 C 0.088 3.912 5 H 0.049 0.951 6 C 0.096 3.904 7 N -0.645 5.645 8 C 0.545 3.455 9 O -0.631 6.631 10 C -0.565 4.565 11 H 0.095 0.905 12 C 0.031 3.969 13 N -0.823 5.823 14 Si 0.994 3.006 15 H -0.253 1.253 16 H -0.276 1.276 17 H -0.251 1.251 18 C 0.097 3.903 19 C 0.095 3.905 20 C -0.125 4.125 21 C -0.163 4.163 22 O -0.370 6.370 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.274 0.726 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -8.921 -9.549 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.002 3.998 4 C 0.029 3.971 5 H 0.067 0.933 6 C -0.028 4.028 7 N -0.381 5.381 8 C 0.352 3.648 9 O -0.518 6.518 10 C -0.601 4.601 11 H 0.113 0.887 12 C -0.184 4.184 13 N -0.452 5.452 14 Si 0.813 3.187 15 H -0.177 1.177 16 H -0.201 1.201 17 H -0.175 1.175 18 C -0.026 4.026 19 C 0.055 3.945 20 C -0.183 4.183 21 C -0.220 4.220 22 O -0.290 6.290 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.807 -8.684 -9.030 14.762 hybrid contribution 0.535 0.596 0.688 1.056 sum -7.272 -8.088 -8.343 13.708 Atomic orbital electron populations 1.22958 0.79202 1.03951 1.00973 1.87892 1.21703 1.27655 1.95610 1.22414 0.89881 0.85392 1.02080 1.22304 0.93887 0.92776 0.88141 0.93303 1.21742 0.82884 0.96328 1.01835 1.48083 1.04409 1.58979 1.26659 1.18669 0.87710 0.78389 0.80071 1.90539 1.80063 1.44925 1.36291 1.21401 0.89779 1.41561 1.07371 0.88741 1.26973 1.06392 0.91721 0.93359 1.70171 1.38359 1.29337 1.07339 0.85124 0.74637 0.80110 0.78837 1.17713 1.20123 1.17480 1.22348 1.00673 0.92015 0.87570 1.22099 0.80723 0.93900 0.97754 1.21688 1.02924 1.00511 0.93134 1.22231 1.02489 0.99606 0.97705 1.87922 1.22885 1.81165 1.37007 0.93117 0.92918 0.88331 0.90575 0.91090 0.91495 0.91581 0.91575 0.88520 0.91868 0.90969 0.91147 0.89139 0.90686 0.95223 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.82 10.67 -144.64 -1.54 -13.36 16 3 C 0.08 2.27 5.60 71.98 0.40 2.67 16 4 C 0.09 3.14 2.67 30.69 0.08 3.22 16 5 H 0.05 1.96 6.26 -2.39 -0.01 1.94 16 6 C 0.10 3.98 5.91 86.35 0.51 4.49 16 7 N -0.64 -30.32 2.54 -822.44 -2.09 -32.41 16 8 C 0.54 31.87 7.62 86.36 0.66 32.53 16 9 O -0.63 -42.62 14.55 -4.30 -0.06 -42.68 16 10 C -0.57 -31.49 8.86 24.83 0.22 -31.27 16 11 H 0.09 4.65 5.73 -2.92 -0.02 4.64 16 12 C 0.03 1.69 5.50 85.31 0.47 2.16 16 13 N -0.82 -50.16 11.86 21.84 0.26 -49.90 16 14 Si 0.99 40.15 29.56 68.60 2.03 42.18 16 15 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 16 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 18 C 0.10 3.66 5.22 86.35 0.45 4.11 16 19 C 0.10 3.08 1.11 -10.69 -0.01 3.07 16 20 C -0.13 -2.96 8.85 71.98 0.64 -2.32 16 21 C -0.16 -5.50 8.09 71.98 0.58 -4.92 16 22 O -0.37 -12.88 9.84 -144.64 -1.42 -14.31 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 3.08 7.11 -2.39 -0.02 3.07 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.27 15.21 8.29 -92.71 -0.77 14.44 16 31 H 0.10 3.69 5.40 -2.38 -0.01 3.67 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.03 1.20 6.12 -2.39 -0.01 1.18 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.42 307.40 3.46 -72.96 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.04 Total: 22.05 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.25 Total: 15.48 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -1.83 Total: -82.31 kcal Atomic # 8 Polarization: -67.32 SS G_CDS: -3.03 Total: -70.35 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -76.42 3.46 -72.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408058011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.609 kcal (2) G-P(sol) polarization free energy of solvation -76.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds