Wall clock time and date at job start Mon Mar 30 2020 04:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.73378 * 2 1 4 4 C 1.53295 * 109.71131 * 239.39788 * 2 1 3 5 5 N 1.46822 * 109.40309 * 186.51771 * 4 2 1 6 6 C 1.46899 * 111.00357 * 189.75135 * 5 4 2 7 7 C 1.52998 * 109.47102 * 169.26389 * 6 5 4 8 8 C 1.53008 * 109.47115 * 180.02562 * 7 6 5 9 9 S 1.80993 * 109.47032 * 180.02562 * 8 7 6 10 10 C 1.76196 * 99.99811 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00307 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00319 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99953 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00279 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47104 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47139 * 120.00620 * 14 12 10 17 17 H 1.48502 * 109.47314 * 240.00052 * 14 12 10 18 18 C 1.46826 * 111.56519 * 65.38407 * 5 4 2 19 19 C 1.53296 * 109.39976 * 294.61397 * 18 5 4 20 20 C 1.51436 * 109.71039 * 120.60920 * 2 1 3 21 21 O 1.20757 * 121.10790 * 348.98958 * 20 2 1 22 22 H 1.09001 * 109.46972 * 299.38824 * 1 2 3 23 23 H 1.08998 * 109.47075 * 59.39174 * 1 2 3 24 24 H 1.09003 * 109.46459 * 179.39296 * 1 2 3 25 25 H 1.09008 * 109.48401 * 66.53752 * 4 2 1 26 26 H 1.08998 * 109.49495 * 306.50733 * 4 2 1 27 27 H 1.08997 * 109.46961 * 289.26949 * 6 5 4 28 28 H 1.09005 * 109.46754 * 49.26568 * 6 5 4 29 29 H 1.08997 * 109.47670 * 300.00126 * 7 6 5 30 30 H 1.09005 * 109.47169 * 60.00434 * 7 6 5 31 31 H 1.08997 * 109.46899 * 300.00530 * 8 7 6 32 32 H 1.09005 * 109.46803 * 60.00142 * 8 7 6 33 33 H 0.96994 * 120.00396 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.48258 * 174.64113 * 18 5 4 35 35 H 1.08999 * 109.48487 * 54.59578 * 18 5 4 36 36 H 1.09004 * 109.71384 * 294.10774 * 19 18 5 37 37 H 1.09005 * 109.74601 * 173.50175 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0471 -0.7347 -1.2421 5 7 3.5069 -0.8675 -1.1579 6 6 4.0652 -1.3556 -2.4259 7 6 5.5895 -1.2283 -2.3946 8 6 6.1710 -1.7361 -3.7156 9 16 7.9744 -1.5862 -3.6782 10 6 8.3674 -2.2233 -5.2733 11 1 7.5784 -2.5564 -5.9312 12 6 9.6911 -2.2960 -5.6847 13 7 10.6528 -1.8895 -4.8831 14 14 10.1078 -2.9720 -7.3755 15 1 8.8569 -3.3585 -8.0762 16 1 10.8153 -1.9314 -8.1641 17 1 10.9827 -4.1631 -7.2305 18 6 3.9066 -1.7312 -0.0399 19 6 3.5158 -1.0641 1.2839 20 6 2.0408 -0.7259 1.2270 21 8 1.2958 -1.0293 2.1276 22 1 -0.3633 0.5043 0.8954 23 1 -0.3633 0.5232 -0.8845 24 1 -0.3632 -1.0277 -0.0109 25 1 1.7845 -0.1678 -2.1354 26 1 1.5943 -1.7248 -1.2939 27 1 3.7906 -2.4012 -2.5652 28 1 3.6679 -0.7628 -3.2499 29 1 5.8641 -0.1827 -2.2554 30 1 5.9868 -1.8211 -1.5706 31 1 5.8965 -2.7817 -3.8553 32 1 5.7737 -1.1430 -4.5393 33 1 11.5778 -1.9406 -5.1704 34 1 4.9856 -1.8832 -0.0657 35 1 3.4015 -2.6933 -0.1251 36 1 4.0970 -0.1523 1.4217 37 1 3.7043 -1.7487 2.1110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429501810.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:39 Heat of formation + Delta-G solvation = -56.455224 kcal Electronic energy + Delta-G solvation = -16644.948427 eV Core-core repulsion = 13933.631104 eV Total energy + Delta-G solvation = -2711.317323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35187 -37.92715 -34.38367 -32.80369 -32.43491 -30.93686 -26.98908 -25.76895 -25.14214 -23.04638 -22.48318 -20.56324 -19.18833 -17.48859 -16.44726 -16.04814 -15.63327 -15.25118 -14.98597 -14.81434 -14.54059 -14.08863 -13.84538 -13.13666 -13.05321 -12.53644 -12.49611 -12.22567 -12.16160 -11.72558 -11.67245 -11.44256 -11.26951 -11.13763 -11.08800 -10.78848 -10.61226 -10.33125 -9.56505 -9.53715 -9.07652 -8.51470 -8.31026 -6.53891 -6.24044 -3.94193 1.73698 3.20008 3.20571 3.28961 3.45679 3.70466 3.84118 4.21422 4.49803 4.55629 4.69284 4.88215 5.01435 5.11225 5.12009 5.15267 5.23401 5.34636 5.40149 5.47319 5.50860 5.59433 5.68377 5.68717 5.72118 5.81758 5.88429 5.89003 6.03114 6.30893 6.54862 6.69365 6.88635 6.92098 7.29344 7.59787 8.35739 9.22505 10.84195 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.057414 B = 0.003277 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.570306 B = 8543.098478 C = 8854.117295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 H 0.113 0.887 4 C 0.066 3.934 5 N -0.542 5.542 6 C 0.062 3.938 7 C -0.095 4.095 8 C -0.113 4.113 9 S -0.132 6.132 10 C -0.516 4.516 11 H 0.072 0.928 12 C 0.070 3.930 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.055 3.945 19 C -0.165 4.165 20 C 0.364 3.636 21 O -0.459 6.459 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.097 0.903 35 H 0.037 0.963 36 H 0.109 0.891 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 2.783 8.424 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 H 0.131 0.869 4 C -0.062 4.062 5 N -0.266 5.266 6 C -0.067 4.067 7 C -0.133 4.133 8 C -0.263 4.263 9 S 0.096 5.904 10 C -0.664 4.664 11 H 0.091 0.909 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.073 4.073 19 C -0.203 4.203 20 C 0.239 3.761 21 O -0.333 6.333 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.127 0.873 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.074 3.484 9.814 19.153 hybrid contribution -0.684 -1.647 -2.282 2.896 sum -16.757 1.837 7.532 18.464 Atomic orbital electron populations 1.21638 0.93082 1.02556 1.02438 1.21954 0.97191 1.01981 0.94550 0.86874 1.22112 0.87665 0.99116 0.97354 1.61762 1.09446 1.50930 1.04511 1.22184 0.96200 0.98208 0.90115 1.21311 0.92271 1.02646 0.97110 1.23235 1.02159 1.02103 0.98774 1.84629 0.96475 1.84260 1.25042 1.22734 0.95025 1.48108 1.00550 0.90934 1.25019 0.95347 0.95162 0.98303 1.70029 1.00017 1.44615 1.35854 0.86116 0.78492 0.78608 0.82317 1.19618 1.20564 1.20585 1.22148 1.02653 0.93502 0.88948 1.22404 0.94971 1.03846 0.99124 1.25006 0.90804 0.74382 0.85861 1.90380 1.60452 1.43914 1.38515 0.91741 0.91745 0.92456 0.89467 0.94449 0.94697 0.90474 0.90594 0.91587 0.92355 0.92090 0.92356 0.88463 0.94429 0.87331 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.64 37.16 0.32 -0.80 16 2 C -0.14 -1.20 3.17 -91.25 -0.29 -1.49 16 3 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.07 0.60 4.80 -3.71 -0.02 0.58 16 5 N -0.54 -5.82 4.57 -234.37 -1.07 -6.89 16 6 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 7 C -0.09 -1.44 5.16 -26.73 -0.14 -1.58 16 8 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 9 S -0.13 -3.40 21.44 -107.50 -2.30 -5.71 16 10 C -0.52 -14.65 9.50 30.94 0.29 -14.36 16 11 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 12 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 13 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16 14 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.06 0.57 5.37 -3.71 -0.02 0.55 16 19 C -0.17 -1.53 6.35 -27.37 -0.17 -1.71 16 20 C 0.36 3.84 6.64 -28.31 -0.19 3.65 16 21 O -0.46 -6.18 16.91 6.00 0.10 -6.08 16 22 H 0.06 0.54 8.03 -51.93 -0.42 0.13 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.71 7.93 -51.92 -0.41 0.30 16 26 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 27 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.00 6.37 -51.93 -0.33 0.67 16 31 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 1.03 6.09 -51.93 -0.32 0.71 16 35 H 0.04 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -31.49 314.70 -9.01 -40.51 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -6.08 Total: -3.33 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -0.12 Total: -14.52 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: -0.34 Total: -31.95 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: 0.10 Total: -6.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.30 Total: -5.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.49 -9.01 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429501810.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.948 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds