Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47564 * 2 1 4 4 C 1.53000 * 109.47418 * 119.99913 * 2 1 3 5 5 H 1.09003 * 110.88352 * 303.88073 * 4 2 1 6 6 C 1.55153 * 111.00844 * 179.97438 * 4 2 1 7 7 C 1.54323 * 103.10236 * 206.29737 * 6 4 2 8 8 N 1.47486 * 107.03754 * 22.24109 * 7 6 4 9 9 C 1.34778 * 125.59520 * 181.08732 * 8 7 6 10 10 O 1.21278 * 119.99822 * 179.97438 * 9 8 7 11 11 C 1.50693 * 119.99827 * 359.92993 * 9 8 7 12 12 S 1.81004 * 109.47178 * 180.02562 * 11 9 8 13 13 C 1.76194 * 100.00130 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00175 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00185 * 180.02562 * 13 12 11 16 16 N 1.31629 * 120.00191 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99739 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 90.00421 * 17 15 13 19 19 H 1.48499 * 109.47279 * 210.00414 * 17 15 13 20 20 H 1.48494 * 109.47429 * 330.00717 * 17 15 13 21 21 C 1.47428 * 108.75727 * 1.02624 * 8 7 6 22 22 H 1.09000 * 109.46928 * 300.00679 * 1 2 3 23 23 H 1.08999 * 109.46636 * 60.00101 * 1 2 3 24 24 H 1.08992 * 109.47004 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47318 * 239.99899 * 2 1 3 26 26 H 1.09006 * 109.46535 * 300.00043 * 3 2 1 27 27 H 1.08997 * 109.47072 * 59.99563 * 3 2 1 28 28 H 1.09001 * 109.47410 * 180.02562 * 3 2 1 29 29 H 1.09002 * 110.72030 * 324.75004 * 6 4 2 30 30 H 1.09003 * 110.72184 * 87.84655 * 6 4 2 31 31 H 1.09000 * 109.88693 * 141.69901 * 7 6 4 32 32 H 1.09005 * 109.88012 * 262.86516 * 7 6 4 33 33 H 1.09000 * 109.47129 * 299.99930 * 11 9 8 34 34 H 1.09000 * 109.47692 * 59.99857 * 11 9 8 35 35 H 0.97006 * 120.00064 * 179.97438 * 16 15 13 36 36 H 1.09000 * 110.36462 * 217.05803 * 21 8 7 37 37 H 1.08998 * 110.36847 * 94.73011 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6343 -0.2668 2.1531 6 6 3.5910 -0.7425 1.2849 7 6 3.9044 -1.9974 2.1267 8 7 2.7203 -2.8737 2.0535 9 6 2.5849 -4.0628 2.6732 10 8 1.5623 -4.7017 2.5425 11 6 3.7044 -4.5990 3.5276 12 16 3.2230 -6.2021 4.2166 13 6 4.6718 -6.5842 5.1436 14 1 5.5042 -5.8962 5.1527 15 6 4.7437 -7.7700 5.8614 16 7 5.8263 -8.0557 6.5536 17 14 3.3043 -8.9604 5.8451 18 1 3.4678 -9.9194 4.7231 19 1 3.2623 -9.7041 7.1298 20 1 2.0385 -8.2042 5.6693 21 6 1.7094 -2.2336 1.1921 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1301 1.4424 -0.0005 29 1 3.9986 -0.8415 0.2788 30 1 3.9780 0.1537 1.7698 31 1 4.7745 -2.5107 1.7175 32 1 4.0926 -1.7119 3.1617 33 1 4.6003 -4.7199 2.9186 34 1 3.9085 -3.9008 4.3394 35 1 5.8764 -8.8843 7.0556 36 1 0.7081 -2.4179 1.5811 37 1 1.7940 -2.6020 0.1698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446320072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -55.358545 kcal Electronic energy + Delta-G solvation = -16919.440258 eV Core-core repulsion = 14208.170490 eV Total energy + Delta-G solvation = -2711.269768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98865 -37.89159 -35.12740 -32.42973 -31.05613 -29.82941 -28.12481 -27.26699 -25.60552 -23.46489 -22.07490 -20.07179 -19.31902 -17.70904 -16.66969 -16.28118 -15.52070 -14.98032 -14.63690 -14.41080 -14.16558 -13.79605 -13.53016 -13.36142 -12.86584 -12.81363 -12.52628 -12.46511 -12.13262 -11.89892 -11.75811 -11.25799 -11.22307 -10.99852 -10.89463 -10.76728 -10.76567 -10.55518 -9.84378 -9.48771 -8.99240 -8.53539 -8.48280 -6.90780 -6.27970 -3.99569 2.72282 2.98283 3.23280 3.34417 3.51957 3.62213 4.18848 4.34424 4.35863 4.44998 4.70693 4.77272 4.95229 5.00999 5.11159 5.12928 5.20125 5.25870 5.36190 5.42935 5.54049 5.55884 5.58907 5.64650 5.70479 5.77596 5.83513 5.88526 5.89656 6.01264 6.04018 6.15056 6.39783 7.62338 7.95170 8.42534 8.47429 9.18313 10.81287 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.052711 B = 0.004040 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.067469 B = 6928.312389 C = 7376.711547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.126 4.126 7 C 0.100 3.900 8 N -0.626 5.626 9 C 0.546 3.454 10 O -0.520 6.520 11 C -0.117 4.117 12 S -0.143 6.143 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.881 5.881 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.113 3.887 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.076 0.924 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 18.953 -12.817 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.117 4.117 5 H 0.103 0.897 6 C -0.164 4.164 7 C -0.024 4.024 8 N -0.363 5.363 9 C 0.334 3.666 10 O -0.395 6.395 11 C -0.268 4.268 12 S 0.083 5.917 13 C -0.668 4.668 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.518 5.518 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.010 4.010 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.286 17.783 -12.836 23.110 hybrid contribution 0.939 0.108 0.342 1.006 sum -6.347 17.891 -12.494 22.725 Atomic orbital electron populations 1.21878 0.94978 1.02171 1.01777 1.21057 0.95945 0.96171 0.97168 1.21846 1.01179 0.95655 1.01752 1.22464 0.95428 0.94719 0.99047 0.89680 1.22701 0.95728 0.97292 1.00648 1.22126 0.88752 0.90769 1.00717 1.48587 1.17838 1.19848 1.50040 1.19980 0.88548 0.79010 0.79020 1.90698 1.30069 1.56829 1.61877 1.23251 0.99469 1.02767 1.01272 1.84779 1.26636 1.18455 1.61820 1.22312 1.01195 1.09586 1.33715 0.89405 1.24710 0.96020 0.96985 0.93581 1.69940 1.27076 1.24980 1.29767 0.86731 0.84421 0.82275 0.78421 1.19193 1.19930 1.15905 1.22210 0.93149 0.91038 0.94553 0.92576 0.92672 0.92322 0.90885 0.92729 0.92640 0.92413 0.90487 0.90019 0.91138 0.91160 0.88630 0.88586 0.91943 0.90525 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.06 37.16 0.34 -0.72 16 2 C -0.08 -0.59 2.44 -90.62 -0.22 -0.81 16 3 C -0.15 -0.87 8.97 37.16 0.33 -0.54 16 4 C -0.10 -0.83 2.56 -88.47 -0.23 -1.06 16 5 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.13 -0.99 5.28 -24.90 -0.13 -1.12 16 7 C 0.10 1.07 6.52 -2.81 -0.02 1.05 16 8 N -0.63 -9.08 3.34 -170.14 -0.57 -9.64 16 9 C 0.55 10.49 7.87 -10.99 -0.09 10.40 16 10 O -0.52 -11.89 16.12 5.56 0.09 -11.80 16 11 C -0.12 -2.38 5.35 36.00 0.19 -2.19 16 12 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 13 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 14 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 15 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 17 Si 0.86 22.04 27.74 -169.99 -4.71 17.32 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 21 C 0.11 1.35 5.63 -2.52 -0.01 1.34 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 7.27 -51.93 -0.38 -0.06 16 29 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 30 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 34 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.08 1.01 7.98 -51.93 -0.41 0.59 16 37 H 0.06 0.74 7.99 -51.93 -0.41 0.33 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -33.60 314.47 -7.53 -41.13 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.24 Total: -4.18 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.38 Total: -5.81 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.21 Total: -35.68 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.60 -7.53 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446320072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.230 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds