Wall clock time and date at job start Mon Mar 30 2020 04:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99924 * 2 1 4 4 C 1.53002 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47275 * 64.99675 * 4 3 2 6 6 C 1.37096 * 120.00355 * 264.55640 * 5 4 3 7 7 H 1.07997 * 120.00182 * 145.53386 * 6 5 4 8 8 C 1.38956 * 119.99811 * 325.53527 * 6 5 4 9 9 N 1.31412 * 119.99796 * 338.24100 * 8 6 5 10 10 Si 1.86794 * 119.99863 * 158.24101 * 8 6 5 11 11 H 1.48504 * 109.47225 * 59.99947 * 10 8 6 12 12 H 1.48500 * 109.47231 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47457 * 299.99914 * 10 8 6 14 14 C 1.34777 * 119.99494 * 84.55558 * 5 4 3 15 15 O 1.21287 * 120.00523 * 0.02562 * 14 5 4 16 16 C 1.50704 * 119.99636 * 180.02562 * 14 5 4 17 17 C 1.53780 * 113.61561 * 180.02562 * 16 14 5 18 18 C 1.53777 * 87.08337 * 139.97736 * 17 16 14 19 19 C 1.53005 * 113.61227 * 89.11442 * 18 17 16 20 20 O 1.42903 * 113.61545 * 219.93318 * 18 17 16 21 21 C 1.53778 * 87.08310 * 334.57020 * 18 17 16 22 22 H 1.08998 * 109.46988 * 59.99872 * 1 2 3 23 23 H 1.08994 * 109.47346 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47025 * 299.99977 * 1 2 3 25 25 H 1.09000 * 109.47481 * 60.00027 * 3 2 1 26 26 H 1.09004 * 109.47116 * 300.00119 * 3 2 1 27 27 H 1.08998 * 109.46941 * 304.99700 * 4 3 2 28 28 H 1.09000 * 109.46839 * 185.00166 * 4 3 2 29 29 H 0.96996 * 119.99888 * 180.02562 * 9 8 6 30 30 H 1.09001 * 112.90954 * 48.74515 * 16 14 5 31 31 H 1.09001 * 113.61319 * 25.42695 * 17 16 14 32 32 H 1.08996 * 113.61462 * 254.53118 * 17 16 14 33 33 H 1.09003 * 109.47030 * 60.00329 * 19 18 17 34 34 H 1.08995 * 109.47260 * 299.99818 * 19 18 17 35 35 H 1.09000 * 109.47138 * 179.97438 * 19 18 17 36 36 H 0.96698 * 113.99908 * 178.47474 * 20 18 17 37 37 H 1.08992 * 113.61634 * 139.98481 * 21 18 17 38 38 H 1.08999 * 113.60945 * 270.88333 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2044 -0.7864 -1.3052 7 1 3.9831 -1.3369 -2.2076 8 6 4.7211 -1.4471 -0.1973 9 7 5.3801 -0.7755 0.7200 10 14 4.4787 -3.2900 -0.0120 11 1 5.0968 -3.9892 -1.1672 12 1 5.1210 -3.7498 1.2455 13 1 3.0263 -3.5963 0.0327 14 6 4.1558 1.3216 -2.3529 15 8 3.9539 2.5167 -2.3064 16 6 4.6081 0.6835 -3.6411 17 6 4.7669 1.6813 -4.8004 18 6 6.0329 0.9021 -5.1938 19 6 5.7651 -0.2560 -6.1572 20 8 7.1113 1.7385 -5.6177 21 6 6.1288 0.4688 -3.7215 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8514 0.5682 0.8409 28 1 3.9785 2.1765 0.0890 29 1 5.7411 -1.2368 1.4931 30 1 4.0281 -0.2016 -3.9027 31 1 4.9662 2.7019 -4.4737 32 1 3.9692 1.6210 -5.5407 33 1 5.3223 0.1301 -7.0754 34 1 5.0788 -0.9639 -5.6926 35 1 6.7035 -0.7590 -6.3905 36 1 7.9179 1.2556 -5.8443 37 1 6.4306 -0.5703 -3.5909 38 1 6.7005 1.1580 -3.1000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457197894.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:46 Heat of formation + Delta-G solvation = -127.088867 kcal Electronic energy + Delta-G solvation = -20476.396852 eV Core-core repulsion = 17319.263753 eV Total energy + Delta-G solvation = -3157.133099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37751 -39.61210 -38.42536 -36.58489 -35.68140 -33.47301 -31.24362 -29.79460 -27.30932 -26.76525 -26.61720 -25.50941 -23.24779 -21.09358 -20.04060 -18.82006 -18.09520 -17.34388 -17.12349 -16.93044 -16.31007 -16.20452 -15.90213 -15.83104 -15.26205 -14.97413 -14.46507 -13.97440 -13.62682 -13.55974 -13.27628 -13.07411 -12.92433 -12.84013 -12.59442 -12.53587 -12.39700 -12.11851 -12.03883 -11.79990 -11.74350 -11.36741 -10.94413 -10.71788 -10.54747 -10.18636 -9.44353 -8.22279 -5.91268 1.45383 1.53337 1.60167 2.03168 2.37669 2.88530 3.00577 3.19550 3.39996 3.63995 3.74577 3.89777 3.98346 4.23875 4.30323 4.51446 4.51708 4.53390 4.61560 4.64302 4.67108 4.79027 4.83902 4.88041 4.90424 4.96795 5.09752 5.22434 5.33544 5.36396 5.50948 5.56529 6.02466 6.39289 6.47608 6.96892 7.21979 7.65638 8.07150 8.81581 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.008003 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.398027 B = 3497.845623 C = 4307.039791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.108 3.892 5 N -0.435 5.435 6 C -0.328 4.328 7 H 0.095 0.905 8 C 0.008 3.992 9 N -0.896 5.896 10 Si 0.975 3.025 11 H -0.259 1.259 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.460 3.540 15 O -0.642 6.642 16 C -0.107 4.107 17 C -0.104 4.104 18 C 0.113 3.887 19 C -0.151 4.151 20 O -0.569 6.569 21 C -0.127 4.127 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.391 0.609 37 H 0.082 0.918 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -3.538 -7.530 8.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.016 4.016 5 N -0.151 5.151 6 C -0.455 4.455 7 H 0.112 0.888 8 C -0.194 4.194 9 N -0.535 5.535 10 Si 0.799 3.201 11 H -0.184 1.184 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.251 3.749 15 O -0.531 6.531 16 C -0.128 4.128 17 C -0.142 4.142 18 C 0.073 3.927 19 C -0.208 4.208 20 O -0.378 6.378 21 C -0.166 4.166 22 H 0.058 0.942 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.101 0.899 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.896 -2.728 -7.187 8.215 hybrid contribution 0.120 -0.648 0.712 0.970 sum -2.775 -3.376 -6.475 7.812 Atomic orbital electron populations 1.22894 0.80628 1.03369 1.00259 1.88061 1.20477 1.27646 1.95300 1.22777 0.94472 0.84634 0.99286 1.21426 0.91467 0.97634 0.91043 1.43565 1.55921 1.07696 1.07916 1.19478 1.41924 0.82054 1.02060 0.88754 1.25971 0.93587 1.03611 0.96224 1.70007 1.32224 1.38744 1.12476 0.85273 0.78505 0.78479 0.77810 1.18375 1.21393 1.19891 1.20951 0.80361 0.86025 0.87609 1.90461 1.59059 1.16856 1.86767 1.22149 0.98501 0.99766 0.92335 1.22925 0.96768 0.98324 0.96220 1.22622 0.87158 0.91311 0.91655 1.22104 1.03843 0.96203 0.98660 1.86527 1.24709 1.37908 1.88626 1.23316 0.93977 1.01875 0.97407 0.94208 0.88713 0.93035 0.91709 0.95189 0.88219 0.93112 0.92189 0.86623 0.91641 0.89343 0.90487 0.90706 0.89831 0.75914 0.89945 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.87 10.44 -148.98 -1.56 -18.43 16 3 C 0.07 2.83 6.24 71.98 0.45 3.28 16 4 C 0.11 5.45 5.29 86.38 0.46 5.91 16 5 N -0.43 -22.47 2.51 -635.55 -1.59 -24.06 16 6 C -0.33 -16.55 8.46 84.04 0.71 -15.84 16 7 H 0.09 4.50 6.75 -2.91 -0.02 4.48 16 8 C 0.01 0.41 4.93 84.93 0.42 0.83 16 9 N -0.90 -48.13 11.34 21.67 0.25 -47.89 16 10 Si 0.97 40.13 29.60 68.60 2.03 42.16 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 C 0.46 23.27 7.12 87.66 0.62 23.89 16 15 O -0.64 -35.74 15.57 -3.05 -0.05 -35.79 16 16 C -0.11 -4.30 2.67 -11.01 -0.03 -4.33 16 17 C -0.10 -3.79 6.82 31.12 0.21 -3.57 16 18 C 0.11 3.40 1.93 -10.27 -0.02 3.38 16 19 C -0.15 -3.25 9.33 71.98 0.67 -2.58 16 20 O -0.57 -16.73 13.49 -148.98 -2.01 -18.74 16 21 C -0.13 -4.73 6.97 31.12 0.22 -4.52 16 22 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.10 5.35 5.37 -2.39 -0.01 5.34 16 28 H 0.05 2.64 7.59 -2.39 -0.02 2.62 16 29 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.12 4.28 6.73 -2.39 -0.02 4.26 16 31 H 0.06 2.80 7.43 -2.39 -0.02 2.78 16 32 H 0.09 2.74 8.10 -2.39 -0.02 2.73 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.62 7.34 -2.39 -0.02 1.60 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.39 7.53 9.06 -74.06 -0.67 6.86 16 37 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 38 H 0.05 2.31 8.09 -2.39 -0.02 2.29 16 Total: -1.00 -67.42 314.93 2.41 -65.01 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.38 Total: 29.27 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 4.96 Total: 8.46 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.35 Total: -71.95 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -3.61 Total: -72.95 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -67.42 2.41 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457197894.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.082 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds