Wall clock time and date at job start Mon Mar 30 2020 04:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00284 * 2 1 4 4 H 1.48506 * 109.47215 * 269.99996 * 3 2 1 5 5 H 1.48502 * 109.47173 * 30.00252 * 3 2 1 6 6 H 1.48501 * 109.47084 * 150.00337 * 3 2 1 7 7 C 1.37877 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00441 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47280 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46926 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99780 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00387 * 4.99966 * 12 11 10 14 14 C 1.50708 * 119.99812 * 185.00555 * 12 11 10 15 15 H 1.09004 * 109.46722 * 311.37203 * 14 12 11 16 16 O 1.42899 * 109.46936 * 191.37457 * 14 12 11 17 17 C 1.52999 * 109.47345 * 71.37343 * 14 12 11 18 18 C 1.53174 * 109.54112 * 294.50376 * 17 14 12 19 19 C 1.53111 * 109.15529 * 183.23940 * 18 17 14 20 20 O 1.42907 * 109.48390 * 57.47740 * 19 18 17 21 21 C 1.42908 * 114.09303 * 298.88679 * 20 19 18 22 22 C 1.53086 * 109.41847 * 61.16243 * 21 20 19 23 23 H 0.97001 * 119.99524 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47258 * 59.98892 * 9 7 2 25 25 H 1.09003 * 109.46771 * 299.99606 * 9 7 2 26 26 H 1.08992 * 109.47105 * 60.00027 * 10 9 7 27 27 H 1.08993 * 109.46873 * 299.99332 * 10 9 7 28 28 H 0.97005 * 119.99956 * 359.97438 * 11 10 9 29 29 H 0.96701 * 114.00255 * 299.99943 * 16 14 12 30 30 H 1.09002 * 109.54242 * 54.67821 * 17 14 12 31 31 H 1.09003 * 109.52227 * 303.05495 * 18 17 14 32 32 H 1.09003 * 109.52854 * 63.24812 * 18 17 14 33 33 H 1.09000 * 109.40420 * 297.49384 * 19 18 17 34 34 H 1.09001 * 109.48049 * 177.50212 * 19 18 17 35 35 H 1.09006 * 109.48020 * 301.17664 * 21 20 19 36 36 H 1.09004 * 109.47720 * 181.14932 * 21 20 19 37 37 H 1.09000 * 109.52535 * 182.48530 * 22 21 20 38 38 H 1.09000 * 109.52537 * 62.28950 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6368 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.1602 -3.8040 -0.0008 13 8 5.5573 -4.8523 -0.0928 14 6 7.6630 -3.8066 0.1131 15 1 8.0824 -3.0946 -0.5978 16 8 8.1601 -5.1152 -0.1740 17 6 8.0676 -3.4075 1.5336 18 6 7.6555 -1.9556 1.7949 19 6 8.1359 -1.5400 3.1880 20 8 9.5522 -1.7104 3.2744 21 6 9.9902 -3.0576 3.0861 22 6 9.5863 -3.5335 1.6883 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6809 0.8904 25 1 3.8751 -0.6799 -0.8895 26 1 3.6584 -3.1503 -0.8902 27 1 3.6578 -3.1507 0.8897 28 1 5.9714 -1.7967 -0.0005 29 1 7.8277 -5.8015 0.4208 30 1 7.5725 -4.0619 2.2511 31 1 8.1103 -1.3074 1.0457 32 1 6.5702 -1.8697 1.7418 33 1 7.6485 -2.1611 3.9394 34 1 7.8844 -0.4938 3.3621 35 1 9.5270 -3.6986 3.8363 36 1 11.0745 -3.1047 3.1870 37 1 9.8805 -4.5750 1.5589 38 1 10.0811 -2.9182 0.9369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541454939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:14 Heat of formation + Delta-G solvation = -152.004175 kcal Electronic energy + Delta-G solvation = -19784.608984 eV Core-core repulsion = 16626.395476 eV Total energy + Delta-G solvation = -3158.213508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50738 -38.99367 -36.76788 -35.20194 -33.87332 -32.79003 -31.37443 -30.33790 -28.05288 -25.11267 -23.75906 -23.51414 -20.99995 -20.55321 -20.34138 -17.83894 -17.07721 -16.74149 -16.40224 -16.15158 -15.27355 -15.09306 -15.03757 -14.50591 -14.21406 -13.99703 -13.73331 -13.34216 -13.15639 -12.67513 -12.56976 -12.23526 -11.63709 -11.60162 -11.55156 -11.28630 -10.98646 -10.85694 -10.57370 -10.44244 -10.33619 -10.01654 -9.83683 -9.44554 -9.22493 -8.70849 -8.61665 -6.15812 -4.16488 2.68422 3.21375 3.28666 3.29924 3.38272 3.64647 4.03970 4.32998 4.33361 4.43278 4.59439 4.72506 4.88409 4.98891 5.02773 5.13547 5.16940 5.31555 5.35946 5.45269 5.52233 5.57858 5.80721 5.81569 5.97909 6.02377 6.11602 6.47269 6.61260 6.94972 7.03823 7.14948 7.32699 7.60407 7.74513 8.34347 8.41228 8.88171 9.43984 10.97213 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.022914 B = 0.005191 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.674511 B = 5393.083231 C = 6340.976241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.075 0.925 9 C -0.022 4.022 10 C 0.127 3.873 11 N -0.722 5.722 12 C 0.479 3.521 13 O -0.540 6.540 14 C 0.098 3.902 15 H 0.120 0.880 16 O -0.538 6.538 17 C -0.115 4.115 18 C -0.168 4.168 19 C 0.064 3.936 20 O -0.384 6.384 21 C 0.060 3.940 22 C -0.142 4.142 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.397 0.603 29 H 0.383 0.617 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.527 -3.968 5.275 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.005 3.995 11 N -0.375 5.375 12 C 0.264 3.736 13 O -0.418 6.418 14 C 0.035 3.965 15 H 0.138 0.862 16 O -0.342 6.342 17 C -0.134 4.134 18 C -0.206 4.206 19 C -0.013 4.013 20 O -0.303 6.303 21 C -0.017 4.017 22 C -0.180 4.180 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.231 0.769 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.344 -4.149 4.786 21.307 hybrid contribution -0.105 0.852 0.286 0.905 sum 20.239 -3.297 5.072 21.124 Atomic orbital electron populations 1.69903 1.06309 1.27111 1.50221 1.24998 0.94760 0.99146 0.94303 0.86761 0.80241 0.83551 0.78567 1.20184 1.21216 1.19076 1.20900 0.88586 0.94909 1.51891 0.90642 1.19796 0.98114 0.91195 0.96833 1.21558 0.75952 1.00295 1.01733 1.46598 1.09366 1.07915 1.73665 1.21445 0.90632 0.84558 0.76992 1.90702 1.70048 1.31568 1.49453 1.21913 0.90354 0.87027 0.97231 0.86246 1.86554 1.70781 1.16434 1.60477 1.21801 0.97237 0.97910 0.96437 1.22514 1.03251 0.95547 0.99295 1.22554 0.81182 1.02229 0.95346 1.87941 1.22418 1.27367 1.92553 1.22597 1.00089 0.83631 0.95407 1.22139 0.94601 1.02917 0.98360 0.92493 0.96015 0.96406 0.91818 0.91892 0.76754 0.76865 0.90193 0.90300 0.89102 0.93008 0.88356 0.93250 0.88809 0.90042 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 7 C -0.52 -14.40 9.66 -34.44 -0.33 -14.74 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 10 C 0.13 2.49 5.62 -4.04 -0.02 2.46 16 11 N -0.72 -11.11 4.26 -60.30 -0.26 -11.37 16 12 C 0.48 7.36 6.97 -10.98 -0.08 7.28 16 13 O -0.54 -10.49 16.31 -14.09 -0.23 -10.72 16 14 C 0.10 1.11 3.00 -27.88 -0.08 1.02 16 15 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 16 O -0.54 -6.37 12.23 -54.88 -0.67 -7.04 16 17 C -0.11 -1.08 2.01 -90.44 -0.18 -1.27 16 18 C -0.17 -1.61 4.41 -26.58 -0.12 -1.72 16 19 C 0.06 0.61 6.84 37.21 0.25 0.86 16 20 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 21 C 0.06 0.49 6.84 37.20 0.25 0.74 16 22 C -0.14 -1.17 5.17 -26.59 -0.14 -1.31 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 25 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.40 5.07 6.67 -40.82 -0.27 4.80 16 29 H 0.38 3.79 8.72 45.56 0.40 4.19 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.97 5.69 -51.93 -0.30 0.68 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -32.67 307.15 -6.61 -39.28 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.15 Total: 5.29 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.66 Total: -5.38 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.52 Total: -37.57 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.28 Total: -22.20 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.67 -6.61 -39.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541454939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.725 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds