Wall clock time and date at job start Mon Mar 30 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00284 * 2 1 4 4 H 1.48506 * 109.47215 * 269.99996 * 3 2 1 5 5 H 1.48502 * 109.47173 * 30.00252 * 3 2 1 6 6 H 1.48501 * 109.47084 * 150.00337 * 3 2 1 7 7 C 1.37877 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00441 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47280 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46926 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99780 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00387 * 4.99966 * 12 11 10 14 14 C 1.50708 * 119.99812 * 185.00555 * 12 11 10 15 15 H 1.09004 * 109.46722 * 311.37203 * 14 12 11 16 16 O 1.42899 * 109.46936 * 191.37457 * 14 12 11 17 17 C 1.52999 * 109.47345 * 71.37343 * 14 12 11 18 18 C 1.53174 * 109.54112 * 294.50376 * 17 14 12 19 19 C 1.53111 * 109.15529 * 183.23940 * 18 17 14 20 20 O 1.42907 * 109.48390 * 57.47740 * 19 18 17 21 21 C 1.42908 * 114.09303 * 298.88679 * 20 19 18 22 22 C 1.53086 * 109.41847 * 61.16243 * 21 20 19 23 23 H 0.97001 * 119.99524 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47258 * 59.98892 * 9 7 2 25 25 H 1.09003 * 109.46771 * 299.99606 * 9 7 2 26 26 H 1.08992 * 109.47105 * 60.00027 * 10 9 7 27 27 H 1.08993 * 109.46873 * 299.99332 * 10 9 7 28 28 H 0.97005 * 119.99956 * 359.97438 * 11 10 9 29 29 H 0.96701 * 114.00255 * 299.99943 * 16 14 12 30 30 H 1.09002 * 109.54242 * 54.67821 * 17 14 12 31 31 H 1.09003 * 109.52227 * 303.05495 * 18 17 14 32 32 H 1.09003 * 109.52854 * 63.24812 * 18 17 14 33 33 H 1.09000 * 109.40420 * 297.49384 * 19 18 17 34 34 H 1.09001 * 109.48049 * 177.50212 * 19 18 17 35 35 H 1.09006 * 109.48020 * 301.17664 * 21 20 19 36 36 H 1.09004 * 109.47720 * 181.14932 * 21 20 19 37 37 H 1.09000 * 109.52535 * 182.48530 * 22 21 20 38 38 H 1.09000 * 109.52537 * 62.28950 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6368 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.1602 -3.8040 -0.0008 13 8 5.5573 -4.8523 -0.0928 14 6 7.6630 -3.8066 0.1131 15 1 8.0824 -3.0946 -0.5978 16 8 8.1601 -5.1152 -0.1740 17 6 8.0676 -3.4075 1.5336 18 6 7.6555 -1.9556 1.7949 19 6 8.1359 -1.5400 3.1880 20 8 9.5522 -1.7104 3.2744 21 6 9.9902 -3.0576 3.0861 22 6 9.5863 -3.5335 1.6883 23 1 -0.4849 0.8401 -0.0004 24 1 3.8745 -0.6809 0.8904 25 1 3.8751 -0.6799 -0.8895 26 1 3.6584 -3.1503 -0.8902 27 1 3.6578 -3.1507 0.8897 28 1 5.9714 -1.7967 -0.0005 29 1 7.8277 -5.8015 0.4208 30 1 7.5725 -4.0619 2.2511 31 1 8.1103 -1.3074 1.0457 32 1 6.5702 -1.8697 1.7418 33 1 7.6485 -2.1611 3.9394 34 1 7.8844 -0.4938 3.3621 35 1 9.5270 -3.6986 3.8363 36 1 11.0745 -3.1047 3.1870 37 1 9.8805 -4.5750 1.5589 38 1 10.0811 -2.9182 0.9369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541454939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:13 Heat of formation + Delta-G solvation = -177.088475 kcal Electronic energy + Delta-G solvation = -19785.696721 eV Core-core repulsion = 16626.395476 eV Total energy + Delta-G solvation = -3159.301245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.54370 -39.92621 -37.78910 -36.67654 -35.08831 -34.40557 -32.30048 -31.81122 -29.13446 -26.70293 -24.60054 -24.41586 -22.68369 -21.71478 -21.21103 -19.07583 -18.91629 -17.76061 -17.37272 -16.86584 -16.44052 -16.33629 -16.24904 -15.89755 -15.36625 -15.21413 -14.93731 -14.61392 -14.26456 -14.18597 -13.41814 -13.29573 -13.14697 -13.03252 -12.51233 -12.26948 -12.23563 -12.17823 -11.77933 -11.76608 -11.60960 -11.52043 -11.27144 -10.79557 -10.74325 -10.33508 -10.07409 -8.30677 -6.38311 1.39383 1.41600 1.46504 1.52684 2.13599 2.36403 2.98934 3.04758 3.17933 3.49596 3.64932 3.78338 3.92937 4.10533 4.22149 4.31804 4.34163 4.38401 4.44661 4.62337 4.65988 4.72420 4.80515 4.83718 4.91409 5.08171 5.12498 5.16505 5.31634 5.37490 5.39003 5.61914 6.20662 6.28263 6.38870 6.60230 6.70137 7.14887 7.26574 8.86191 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.022914 B = 0.005191 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.674511 B = 5393.083231 C = 6340.976241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.232 1.232 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.013 4.013 10 C 0.142 3.858 11 N -0.710 5.710 12 C 0.478 3.522 13 O -0.585 6.585 14 C 0.111 3.889 15 H 0.141 0.859 16 O -0.545 6.545 17 C -0.108 4.108 18 C -0.167 4.167 19 C 0.062 3.938 20 O -0.400 6.400 21 C 0.055 3.945 22 C -0.135 4.135 23 H 0.268 0.732 24 H 0.041 0.959 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.414 0.586 29 H 0.390 0.610 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.715 -2.484 5.495 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.155 1.155 7 C -0.578 4.578 8 H 0.045 0.955 9 C -0.050 4.050 10 C 0.018 3.982 11 N -0.364 5.364 12 C 0.265 3.735 13 O -0.466 6.466 14 C 0.049 3.951 15 H 0.159 0.841 16 O -0.351 6.351 17 C -0.127 4.127 18 C -0.205 4.205 19 C -0.015 4.015 20 O -0.319 6.319 21 C -0.021 4.021 22 C -0.173 4.173 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.253 0.747 29 H 0.240 0.760 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.581 -2.672 5.013 24.255 hybrid contribution -1.154 0.265 0.225 1.205 sum 22.427 -2.406 5.239 23.156 Atomic orbital electron populations 1.70080 1.08658 1.28440 1.51942 1.26078 0.95651 1.03865 0.93620 0.85570 0.79880 0.77316 0.79319 1.19178 1.21350 1.15466 1.21251 0.91655 0.93294 1.51641 0.95453 1.19657 0.94387 0.92803 0.98197 1.21060 0.78666 0.98547 0.99962 1.46343 1.07413 1.09144 1.73520 1.22302 0.92419 0.83481 0.75338 1.90686 1.71407 1.33141 1.51348 1.21956 0.86717 0.87435 0.99022 0.84149 1.86540 1.70524 1.16895 1.61110 1.21745 0.98284 0.97855 0.94815 1.22499 1.02513 0.95665 0.99839 1.22596 0.80963 1.02693 0.95247 1.87923 1.22736 1.28616 1.92664 1.22752 1.01094 0.82809 0.95445 1.22090 0.93190 1.03514 0.98466 0.92341 0.94064 0.94744 0.94146 0.93475 0.74736 0.75991 0.90785 0.88976 0.90265 0.93128 0.87719 0.92859 0.87269 0.89239 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.01 0.28 5.47 84.65 0.46 0.75 16 3 Si 0.96 41.27 27.47 68.60 1.88 43.16 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.23 -8.67 6.54 99.48 0.65 -8.02 16 7 C -0.54 -30.28 9.66 25.60 0.25 -30.03 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 10 C 0.14 5.56 5.62 86.38 0.49 6.04 16 11 N -0.71 -20.67 4.26 -463.07 -1.97 -22.64 16 12 C 0.48 14.05 6.97 87.66 0.61 14.67 16 13 O -0.59 -22.76 16.31 15.77 0.26 -22.50 16 14 C 0.11 2.24 3.00 29.85 0.09 2.33 16 15 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 16 O -0.54 -11.73 12.23 -130.19 -1.59 -13.32 16 17 C -0.11 -1.76 2.01 -10.68 -0.02 -1.78 16 18 C -0.17 -2.71 4.41 30.69 0.14 -2.57 16 19 C 0.06 1.02 6.84 72.02 0.49 1.52 16 20 O -0.40 -7.38 10.77 -148.98 -1.60 -8.99 16 21 C 0.06 0.76 6.84 72.01 0.49 1.25 16 22 C -0.14 -1.79 5.17 30.68 0.16 -1.63 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.04 1.62 7.20 -2.39 -0.02 1.61 16 25 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.41 9.29 6.67 -92.70 -0.62 8.68 16 29 H 0.39 7.14 8.72 -74.06 -0.65 6.50 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.48 5.69 -2.39 -0.01 1.47 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.09 1.07 7.68 -2.39 -0.02 1.06 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.40 307.15 0.29 -72.10 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.25 Total: 20.56 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 3.28 Total: -9.89 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.67 Total: -81.12 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.94 Total: -44.81 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.16 kcal Total: -72.40 0.29 -72.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541454939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.984 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds