Wall clock time and date at job start Mon Mar 30 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.60266 * 2 1 4 4 C 1.55149 * 109.45676 * 239.76691 * 2 1 3 5 5 S 1.83988 * 100.91199 * 198.72062 * 4 2 1 6 6 C 1.83399 * 95.85287 * 35.35017 * 5 4 2 7 7 C 1.52943 * 109.60263 * 120.31787 * 2 1 3 8 8 H 1.08996 * 108.89121 * 270.49985 * 7 2 1 9 9 N 1.46500 * 108.88928 * 29.05647 * 7 2 1 10 10 C 1.34770 * 120.00239 * 215.30853 * 9 7 2 11 11 O 1.21287 * 119.99913 * 359.72429 * 10 9 7 12 12 C 1.50699 * 120.00225 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47334 * 179.72690 * 12 10 9 14 14 C 1.52995 * 109.46948 * 179.97438 * 13 12 10 15 15 C 1.50707 * 109.46916 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99835 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99938 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00016 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47448 * 59.99816 * 19 17 15 21 21 H 1.48503 * 109.47003 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47107 * 299.99559 * 19 17 15 23 23 H 1.09002 * 109.47289 * 293.47556 * 1 2 3 24 24 H 1.09000 * 109.46894 * 53.47301 * 1 2 3 25 25 H 1.09000 * 109.46993 * 173.47511 * 1 2 3 26 26 H 1.09000 * 111.12759 * 316.62892 * 4 2 1 27 27 H 1.08995 * 111.13134 * 80.80717 * 4 2 1 28 28 H 1.08993 * 110.34077 * 221.37974 * 6 5 4 29 29 H 1.09000 * 110.34459 * 99.12059 * 6 5 4 30 30 H 0.97006 * 119.99433 * 35.31134 * 9 7 2 31 31 H 1.09007 * 109.46728 * 299.72370 * 12 10 9 32 32 H 1.09001 * 109.47225 * 59.72420 * 12 10 9 33 33 H 1.08998 * 109.46725 * 300.00324 * 13 12 10 34 34 H 1.09000 * 109.46694 * 59.99899 * 13 12 10 35 35 H 1.08994 * 109.47337 * 299.99753 * 14 13 12 36 36 H 1.09000 * 109.47361 * 60.00485 * 14 13 12 37 37 H 0.97003 * 119.99501 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0468 -0.7366 -1.2639 5 16 3.7761 -1.1159 -0.7633 6 6 3.3973 -1.4147 1.0061 7 6 2.0431 -0.7273 1.2437 8 1 2.1530 -0.0065 2.0539 9 7 1.0608 -1.7392 1.6405 10 6 0.8565 -2.0047 2.9459 11 8 1.4896 -1.4095 3.7921 12 6 -0.1543 -3.0451 3.3541 13 6 -0.1853 -3.1553 4.8798 14 6 -1.2121 -4.2111 5.2941 15 6 -1.2422 -4.3200 6.7969 16 1 -0.5935 -3.6986 7.3964 17 6 -2.0971 -5.2138 7.4064 18 7 -2.8866 -5.9708 6.6763 19 14 -2.1348 -5.3482 9.2691 20 1 -2.5122 -4.0358 9.8526 21 1 -3.1313 -6.3731 9.6713 22 1 -0.7913 -5.7422 9.7643 23 1 -0.3634 0.4094 0.9426 24 1 -0.3633 0.6117 -0.8258 25 1 -0.3633 -1.0210 -0.1168 26 1 1.4808 -1.6503 -1.4451 27 1 2.0245 -0.0833 -2.1361 28 1 4.1648 -0.9686 1.6385 29 1 3.3187 -2.4842 1.2015 30 1 0.5574 -2.2181 0.9635 31 1 -1.1405 -2.7558 2.9906 32 1 0.1226 -4.0085 2.9258 33 1 0.8007 -3.4444 5.2433 34 1 -0.4623 -2.1919 5.3080 35 1 -2.1980 -3.9215 4.9307 36 1 -0.9355 -5.1746 4.8659 37 1 -3.4883 -6.5993 7.1051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594022653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:49 Heat of formation + Delta-G solvation = -60.931528 kcal Electronic energy + Delta-G solvation = -16914.858617 eV Core-core repulsion = 14203.347187 eV Total energy + Delta-G solvation = -2711.511431 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.04574 -37.47395 -34.20890 -33.11713 -32.03552 -30.48315 -28.02614 -27.31690 -24.48532 -23.53956 -21.09937 -20.00723 -19.79855 -17.32165 -16.69771 -16.34383 -15.84152 -15.53731 -15.17360 -14.57131 -14.43165 -14.00416 -13.54268 -13.23613 -13.00007 -12.59965 -12.28777 -12.26376 -12.09289 -11.82525 -11.42377 -11.34727 -11.20134 -10.79495 -10.64205 -10.56117 -10.33986 -9.75132 -9.69944 -9.29126 -9.16748 -9.04345 -8.32667 -8.01403 -5.98525 -4.00075 1.52728 1.98703 2.83221 3.15286 3.36054 3.39533 3.43374 4.02902 4.22491 4.48544 4.51541 4.69350 4.87735 4.99136 5.03877 5.10274 5.22024 5.37127 5.37532 5.49605 5.58872 5.65898 5.68031 5.72763 5.84130 6.21697 6.35720 6.69846 6.90422 7.13901 7.47706 7.69284 7.81979 8.01873 8.35707 8.45777 9.06764 9.63931 11.12931 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.047780 B = 0.003385 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.876537 B = 8269.708597 C = 8441.323746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.065 4.065 5 S -0.301 6.301 6 C -0.076 4.076 7 C 0.138 3.862 8 H 0.108 0.892 9 N -0.735 5.735 10 C 0.514 3.486 11 O -0.535 6.535 12 C -0.138 4.138 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 10.797 -18.106 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.116 0.884 4 C -0.213 4.213 5 S -0.075 6.075 6 C -0.225 4.225 7 C 0.031 3.969 8 H 0.126 0.874 9 N -0.389 5.389 10 C 0.302 3.698 11 O -0.411 6.411 12 C -0.178 4.178 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.018 11.037 -18.076 23.019 hybrid contribution -1.277 -0.424 1.246 1.834 sum 7.741 10.612 -16.831 21.350 Atomic orbital electron populations 1.21780 0.92939 1.02400 1.02771 1.22309 0.97689 1.00662 0.91674 0.88450 1.24498 0.92990 1.03266 1.00548 1.87924 1.15391 1.92645 1.11508 1.24537 0.99831 1.04926 0.93214 1.21461 0.86327 0.90929 0.98135 0.87436 1.46413 1.42652 1.41710 1.08156 1.21343 0.83476 0.83549 0.81433 1.90682 1.48860 1.51128 1.50384 1.21857 0.97481 0.97023 1.01475 1.21446 1.01259 1.01141 0.89442 1.19126 0.93281 0.93033 0.96209 1.21234 1.21469 1.20953 0.92096 0.92635 1.25018 0.95559 0.95688 0.98217 1.69953 1.24354 1.24212 1.35225 0.86650 0.77770 0.77746 0.85802 1.20224 1.21322 1.20213 0.91570 0.91956 0.92093 0.88983 0.87389 0.87713 0.88411 0.76452 0.89316 0.89324 0.92710 0.92706 0.96616 0.96622 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.32 37.16 0.31 -0.59 16 2 C -0.10 -0.73 3.00 -89.51 -0.27 -1.00 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.06 -0.44 6.86 38.29 0.26 -0.18 16 5 S -0.30 -2.96 23.23 -107.50 -2.50 -5.46 16 6 C -0.08 -0.76 7.14 37.53 0.27 -0.50 16 7 C 0.14 1.34 2.89 -67.59 -0.20 1.14 16 8 H 0.11 1.24 7.27 -51.93 -0.38 0.86 16 9 N -0.73 -7.65 3.87 -53.47 -0.21 -7.85 16 10 C 0.51 7.62 7.83 -10.99 -0.09 7.53 16 11 O -0.54 -10.07 15.49 5.55 0.09 -9.99 16 12 C -0.14 -2.18 5.70 -27.88 -0.16 -2.34 16 13 C -0.09 -2.01 4.44 -26.73 -0.12 -2.13 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 26 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.10 1.06 7.88 -51.93 -0.41 0.65 16 30 H 0.40 3.22 7.13 -40.82 -0.29 2.93 16 31 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -32.60 314.88 -8.72 -41.32 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.02 Total: -2.03 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.54 Total: -11.42 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.53 Total: -34.11 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.50 Total: -5.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.60 -8.72 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594022653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.613 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds