Wall clock time and date at job start Mon Mar 30 2020 04:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46922 * 120.00214 * 8 6 4 11 11 H 1.48498 * 109.46996 * 239.99688 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.21281 * 119.99736 * 240.00187 * 12 2 1 14 14 N 1.34779 * 120.00201 * 59.99469 * 12 2 1 15 15 C 1.46503 * 119.99606 * 180.02562 * 14 12 2 16 16 C 1.47210 * 109.46611 * 180.02562 * 15 14 12 17 17 C 5.82339 * 87.86388 * 273.02446 * 2 1 3 18 18 C 7.08326 * 84.37440 * 278.00886 * 2 1 3 19 19 C 1.39539 * 120.13856 * 262.58787 * 18 17 16 20 20 C 1.37974 * 119.85281 * 179.79531 * 19 18 17 21 21 C 1.38353 * 120.14095 * 0.46279 * 20 19 18 22 22 C 1.38335 * 120.28795 * 359.79134 * 21 20 19 23 23 C 1.37985 * 120.14421 * 359.97437 * 22 21 20 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 28 28 H 0.96991 * 119.99747 * 0.02562 * 14 12 2 29 29 H 1.08992 * 109.47080 * 299.99586 * 15 14 12 30 30 H 1.09001 * 109.47138 * 60.00172 * 15 14 12 31 31 H 1.07999 * 120.07527 * 0.02562 * 19 18 17 32 32 H 1.08002 * 119.92905 * 180.25308 * 20 19 18 33 33 H 1.07999 * 119.85113 * 179.76843 * 21 20 19 34 34 H 1.07999 * 119.93137 * 179.97438 * 22 21 20 35 35 H 1.07990 * 120.07516 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.1456 -2.2878 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1947 -0.9407 -3.6508 16 6 1.7045 -0.2463 -4.8527 17 6 1.3130 0.3070 -5.8112 18 6 0.8357 0.9821 -6.9804 19 6 -0.0890 2.0204 -6.8615 20 6 -0.5417 2.6696 -7.9916 21 6 -0.0881 2.2869 -9.2414 22 6 0.8246 1.2549 -9.3664 23 6 1.2889 0.6006 -8.2438 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7095 1.1617 3.4844 28 1 1.1494 0.5390 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8310 -1.9682 -3.6506 31 1 -0.4467 2.3176 -5.8868 32 1 -1.2543 3.4761 -7.9007 33 1 -0.4484 2.7958 -10.1231 34 1 1.1745 0.9606 -10.3448 35 1 2.0011 -0.2051 -8.3427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596700380.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:09 Heat of formation + Delta-G solvation = 26.726505 kcal Electronic energy + Delta-G solvation = -17009.450416 eV Core-core repulsion = 14166.296171 eV Total energy + Delta-G solvation = -2843.154244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.37634 -38.84804 -35.20462 -33.73630 -33.30430 -31.23854 -30.93838 -30.05909 -26.63821 -25.12379 -23.14620 -22.78401 -22.21834 -19.51856 -18.44110 -16.82120 -16.25600 -16.01266 -15.35567 -15.10997 -14.89642 -14.66829 -14.25211 -13.73127 -13.56712 -13.38478 -13.05594 -12.85086 -12.37268 -11.71747 -11.58398 -11.52931 -11.02185 -10.96478 -10.74323 -10.67185 -10.45944 -10.24913 -9.95960 -9.26273 -8.96172 -8.80108 -8.64554 -8.41260 -8.33325 -6.02715 -4.05903 0.68476 1.09934 2.32793 2.76154 3.33138 3.40656 3.49127 3.67811 3.76097 3.82156 4.16450 4.49332 4.66229 4.67504 4.80547 5.07973 5.21811 5.27757 5.30697 5.62802 5.69989 5.72864 5.76988 6.12897 6.18973 6.21751 6.25174 6.62498 6.64626 6.83401 6.90260 6.97024 7.38346 7.47667 7.75896 7.98476 8.13193 8.41478 9.03548 9.17941 9.59728 11.05001 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.047025 B = 0.003075 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.284448 B = 9104.905069 C = 9608.243913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.544 6.544 14 N -0.746 5.746 15 C 0.230 3.770 16 C -0.147 4.147 17 C -0.141 4.141 18 C 0.022 3.978 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.100 4.100 24 H 0.094 0.906 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.400 0.600 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 3.928 -21.717 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.312 3.688 13 O -0.419 6.419 14 N -0.401 5.401 15 C 0.107 3.893 16 C -0.147 4.147 17 C -0.143 4.143 18 C 0.022 3.978 19 C -0.115 4.115 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.118 4.118 24 H 0.112 0.888 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.234 0.766 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.685 3.287 -21.464 21.879 hybrid contribution -0.017 0.014 0.679 0.680 sum -2.703 3.301 -20.784 21.218 Atomic orbital electron populations 1.21754 0.96470 0.99891 1.00984 1.18891 0.94208 0.96909 0.89105 0.92854 1.21188 1.30916 1.12816 0.88937 0.90655 1.24955 0.95123 0.95079 0.99150 1.69880 1.37192 1.23120 1.23449 0.86393 0.78611 0.79785 0.82444 1.19535 1.21056 1.21060 1.22056 0.78358 0.84280 0.84127 1.90541 1.37934 1.26844 1.86615 1.46358 1.55919 1.32961 1.04847 1.18063 0.98926 0.94615 0.77711 1.22393 0.98399 0.98289 0.95627 1.19108 1.01485 0.99277 0.94410 1.15915 0.97432 0.95627 0.88797 1.21288 0.96004 0.94780 0.99438 1.21115 1.00233 1.00012 0.92260 1.21275 0.97325 0.97214 0.97620 1.21084 0.97811 0.96460 0.98424 1.21241 0.99597 0.99746 0.91174 0.88777 0.96908 0.94923 0.93009 0.76646 0.89286 0.89287 0.85329 0.85451 0.85808 0.85577 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.21 8.37 -34.45 -0.29 -14.50 16 5 H 0.08 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.88 7.15 -10.99 -0.08 11.80 16 13 O -0.54 -14.05 15.46 5.56 0.09 -13.96 16 14 N -0.75 -13.24 5.43 -63.16 -0.34 -13.59 16 15 C 0.23 3.49 6.15 -6.82 -0.04 3.45 16 16 C -0.15 -2.06 13.46 -37.12 -0.50 -2.56 16 17 C -0.14 -1.90 13.24 -38.84 -0.51 -2.41 16 18 C 0.02 0.26 5.72 -107.00 -0.61 -0.35 16 19 C -0.10 -0.99 9.75 -39.19 -0.38 -1.37 16 20 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 21 C -0.12 -0.88 10.04 -39.50 -0.40 -1.27 16 22 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 23 C -0.10 -0.97 9.75 -39.19 -0.38 -1.35 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.40 6.36 7.87 -40.82 -0.32 6.04 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -31.56 313.00 -8.26 -39.82 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.32 Total: 2.82 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -4.00 Total: -12.02 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.28 Total: -38.18 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.56 -8.26 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596700380.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.542 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds