Wall clock time and date at job start Mon Mar 30 2020 04:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 H 1.08999 * 109.57947 * 305.27562 * 3 2 1 5 5 C 1.53232 * 109.58368 * 184.99799 * 3 2 1 6 6 N 1.46376 * 109.49148 * 182.55323 * 5 3 2 7 7 C 1.34773 * 119.64782 * 245.07237 * 6 5 3 8 8 O 1.21285 * 119.99871 * 357.05681 * 7 6 5 9 9 C 1.50697 * 120.00299 * 177.06907 * 7 6 5 10 10 H 1.08999 * 109.47254 * 51.73938 * 9 7 6 11 11 C 1.53006 * 109.46580 * 291.74505 * 9 7 6 12 12 C 1.50700 * 109.47482 * 171.74632 * 9 7 6 13 13 H 1.08002 * 119.99851 * 5.27841 * 12 9 7 14 14 C 1.37875 * 119.99931 * 185.27736 * 12 9 7 15 15 N 1.31513 * 120.00197 * 5.37012 * 14 12 9 16 16 Si 1.86801 * 119.99938 * 185.36354 * 14 12 9 17 17 H 1.48501 * 109.47077 * 95.00013 * 16 14 12 18 18 H 1.48498 * 109.47631 * 215.00252 * 16 14 12 19 19 H 1.48500 * 109.47331 * 335.00454 * 16 14 12 20 20 C 1.46374 * 120.70498 * 65.08393 * 6 5 3 21 21 C 1.53240 * 109.49377 * 294.91679 * 20 6 5 22 22 S 1.81739 * 108.79388 * 57.65391 * 21 20 6 23 23 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47306 * 299.99796 * 1 2 3 25 25 H 1.09004 * 109.47264 * 59.99956 * 1 2 3 26 26 H 1.08992 * 109.47036 * 120.00390 * 2 1 3 27 27 H 1.09000 * 109.47306 * 240.00203 * 2 1 3 28 28 H 1.09003 * 109.47076 * 302.56291 * 5 3 2 29 29 H 1.09006 * 109.46958 * 62.54348 * 5 3 2 30 30 H 1.08990 * 109.47344 * 295.54583 * 11 9 7 31 31 H 1.09000 * 109.47231 * 55.55229 * 11 9 7 32 32 H 1.09008 * 109.46903 * 175.54821 * 11 9 7 33 33 H 0.96996 * 120.00241 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46612 * 54.92787 * 20 6 5 35 35 H 1.09003 * 109.46981 * 174.90846 * 20 6 5 36 36 H 1.09000 * 109.58534 * 177.44943 * 21 20 6 37 37 H 1.08999 * 109.57828 * 297.86589 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9846 -0.8384 5 6 3.5671 1.4474 -0.1258 6 7 4.0579 2.8251 -0.0644 7 6 4.6575 3.3678 -1.1424 8 8 4.8361 2.6987 -2.1381 9 6 5.1064 4.8061 -1.1107 10 1 5.7164 4.9768 -0.2236 11 6 3.8813 5.7218 -1.0712 12 6 5.9184 5.1063 -2.3442 13 1 6.0209 4.3599 -3.1181 14 6 6.5305 6.3337 -2.4847 15 7 6.4947 7.2031 -1.4986 16 14 7.4107 6.7617 -4.0758 17 1 6.4897 7.5160 -4.9635 18 1 8.6013 7.5963 -3.7739 19 1 7.8408 5.5131 -4.7549 20 6 3.9045 3.6194 1.1555 21 6 2.4153 3.8593 1.4257 22 16 1.5784 2.2518 1.5605 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 4.0008 0.8705 0.6911 29 1 3.8547 1.0014 -1.0779 30 1 3.3131 5.6086 -1.9944 31 1 3.2530 5.4518 -0.2224 32 1 4.2051 6.7576 -0.9685 33 1 6.9249 8.0668 -1.5976 34 1 4.3445 3.0828 1.9961 35 1 4.4101 4.5771 1.0313 36 1 2.2975 4.4119 2.3578 37 1 1.9821 4.4289 0.6035 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597316941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:57 Heat of formation + Delta-G solvation = -47.555169 kcal Electronic energy + Delta-G solvation = -17944.805972 eV Core-core repulsion = 15233.874584 eV Total energy + Delta-G solvation = -2710.931388 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51049 -36.20296 -34.86325 -33.73415 -31.00251 -30.29518 -28.71937 -25.19341 -24.18392 -23.25534 -21.76786 -21.37594 -18.67380 -16.76861 -16.39455 -15.96438 -15.50790 -15.01423 -14.80227 -14.41906 -14.06352 -13.64064 -13.28350 -13.01881 -12.64459 -12.54851 -12.22181 -11.98263 -11.63718 -11.42154 -11.29401 -11.11419 -11.00461 -10.86461 -10.67627 -10.59305 -10.37764 -9.99625 -9.65619 -9.02005 -8.62694 -8.45770 -8.36917 -7.55016 -6.09864 -4.09958 1.78670 2.56926 3.30904 3.37348 3.41659 3.48565 3.57414 4.43487 4.65499 4.81814 5.01096 5.04213 5.13535 5.25875 5.28329 5.43289 5.45960 5.60744 5.66383 5.80891 5.84908 5.88689 5.96193 6.07610 6.13970 6.18407 6.52630 6.70899 6.80233 6.97789 7.33816 7.59454 7.88256 7.95356 8.29726 8.98477 9.09000 9.55010 11.00455 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.037270 B = 0.005612 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.088953 B = 4988.233903 C = 5418.239794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.062 4.062 4 H 0.089 0.911 5 C 0.113 3.887 6 N -0.631 5.631 7 C 0.521 3.479 8 O -0.540 6.540 9 C 0.030 3.970 10 H 0.057 0.943 11 C -0.134 4.134 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.107 3.893 21 C -0.101 4.101 22 S -0.267 6.267 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.034 0.966 31 H 0.023 0.977 32 H 0.079 0.921 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -8.814 7.608 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.192 4.192 4 H 0.108 0.892 5 C -0.012 4.012 6 N -0.367 5.367 7 C 0.313 3.687 8 O -0.415 6.415 9 C 0.009 3.991 10 H 0.074 0.926 11 C -0.192 4.192 12 C -0.542 4.542 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.018 4.018 21 C -0.251 4.251 22 S -0.041 6.041 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.057 -9.369 7.929 15.867 hybrid contribution 1.092 0.906 -1.654 2.179 sum -8.964 -8.462 6.276 13.833 Atomic orbital electron populations 1.21799 0.95045 1.01565 1.02575 1.21330 0.96624 0.93166 1.02968 1.23689 0.99370 0.99307 0.96800 0.89243 1.21552 0.90751 0.84825 1.04117 1.48199 1.61101 1.13021 1.14342 1.22152 0.74412 0.91417 0.80710 1.90521 1.54951 1.63618 1.32445 1.18871 0.95075 0.84714 1.00432 0.92555 1.21867 0.96387 1.02913 0.97998 1.21116 1.29726 0.99831 1.03502 0.90854 1.24936 0.96030 0.96333 0.96726 1.69919 1.44871 1.07708 1.30976 0.86466 0.78996 0.78426 0.83534 1.20690 1.21261 1.19686 1.21794 0.94142 0.98354 0.87485 1.24011 0.98639 0.96095 1.06311 1.86553 1.69769 1.18677 1.29071 0.92620 0.91767 0.92624 0.90948 0.90470 0.91003 0.88218 0.94669 0.95867 0.90222 0.92922 0.90803 0.86956 0.87018 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.75 37.16 0.36 -1.14 16 2 C -0.10 -1.09 5.41 -26.73 -0.14 -1.23 16 3 C -0.06 -0.82 2.76 -26.61 -0.07 -0.90 16 4 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 5 C 0.11 1.71 5.52 -3.99 -0.02 1.69 16 6 N -0.63 -11.17 2.79 -173.59 -0.48 -11.66 16 7 C 0.52 11.78 6.95 -10.99 -0.08 11.70 16 8 O -0.54 -13.93 14.79 5.55 0.08 -13.84 16 9 C 0.03 0.73 1.65 -92.92 -0.15 0.58 16 10 H 0.06 1.41 7.06 -51.93 -0.37 1.04 16 11 C -0.13 -2.95 8.56 37.16 0.32 -2.63 16 12 C -0.50 -14.11 8.31 -34.44 -0.29 -14.39 16 13 H 0.07 2.19 6.78 -52.49 -0.36 1.83 16 14 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 15 N -0.90 -24.80 11.98 55.43 0.66 -24.13 16 16 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.11 1.59 5.35 -3.99 -0.02 1.57 16 21 C -0.10 -1.33 6.25 37.28 0.23 -1.09 16 22 S -0.27 -3.49 20.52 -107.50 -2.21 -5.70 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.68 7.18 -51.93 -0.37 0.30 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.67 6.88 -51.93 -0.36 1.31 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.42 4.10 -51.93 -0.21 0.20 16 32 H 0.08 1.91 6.83 -51.92 -0.35 1.55 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.11 1.80 4.75 -51.93 -0.25 1.56 16 36 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.31 6.59 -51.93 -0.34 0.97 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -30.02 298.47 -7.97 -37.99 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.55 Total: 0.50 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 0.04 Total: -4.27 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.18 Total: -35.79 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.21 Total: -5.70 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.02 -7.97 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597316941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.564 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds