Wall clock time and date at job start Mon Mar 30 2020 04:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 H 1.08999 * 109.57947 * 305.27562 * 3 2 1 5 5 C 1.53232 * 109.58368 * 184.99799 * 3 2 1 6 6 N 1.46376 * 109.49148 * 182.55323 * 5 3 2 7 7 C 1.34773 * 119.64782 * 245.07237 * 6 5 3 8 8 O 1.21285 * 119.99871 * 357.05681 * 7 6 5 9 9 C 1.50697 * 120.00299 * 177.06907 * 7 6 5 10 10 H 1.08999 * 109.47254 * 51.73938 * 9 7 6 11 11 C 1.53006 * 109.46580 * 291.74505 * 9 7 6 12 12 C 1.50700 * 109.47482 * 171.74632 * 9 7 6 13 13 H 1.08002 * 119.99851 * 5.27841 * 12 9 7 14 14 C 1.37875 * 119.99931 * 185.27736 * 12 9 7 15 15 N 1.31513 * 120.00197 * 5.37012 * 14 12 9 16 16 Si 1.86801 * 119.99938 * 185.36354 * 14 12 9 17 17 H 1.48501 * 109.47077 * 95.00013 * 16 14 12 18 18 H 1.48498 * 109.47631 * 215.00252 * 16 14 12 19 19 H 1.48500 * 109.47331 * 335.00454 * 16 14 12 20 20 C 1.46374 * 120.70498 * 65.08393 * 6 5 3 21 21 C 1.53240 * 109.49377 * 294.91679 * 20 6 5 22 22 S 1.81739 * 108.79388 * 57.65391 * 21 20 6 23 23 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47306 * 299.99796 * 1 2 3 25 25 H 1.09004 * 109.47264 * 59.99956 * 1 2 3 26 26 H 1.08992 * 109.47036 * 120.00390 * 2 1 3 27 27 H 1.09000 * 109.47306 * 240.00203 * 2 1 3 28 28 H 1.09003 * 109.47076 * 302.56291 * 5 3 2 29 29 H 1.09006 * 109.46958 * 62.54348 * 5 3 2 30 30 H 1.08990 * 109.47344 * 295.54583 * 11 9 7 31 31 H 1.09000 * 109.47231 * 55.55229 * 11 9 7 32 32 H 1.09008 * 109.46903 * 175.54821 * 11 9 7 33 33 H 0.96996 * 120.00241 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46612 * 54.92787 * 20 6 5 35 35 H 1.09003 * 109.46981 * 174.90846 * 20 6 5 36 36 H 1.09000 * 109.58534 * 177.44943 * 21 20 6 37 37 H 1.08999 * 109.57828 * 297.86589 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9846 -0.8384 5 6 3.5671 1.4474 -0.1258 6 7 4.0579 2.8251 -0.0644 7 6 4.6575 3.3678 -1.1424 8 8 4.8361 2.6987 -2.1381 9 6 5.1064 4.8061 -1.1107 10 1 5.7164 4.9768 -0.2236 11 6 3.8813 5.7218 -1.0712 12 6 5.9184 5.1063 -2.3442 13 1 6.0209 4.3599 -3.1181 14 6 6.5305 6.3337 -2.4847 15 7 6.4947 7.2031 -1.4986 16 14 7.4107 6.7617 -4.0758 17 1 6.4897 7.5160 -4.9635 18 1 8.6013 7.5963 -3.7739 19 1 7.8408 5.5131 -4.7549 20 6 3.9045 3.6194 1.1555 21 6 2.4153 3.8593 1.4257 22 16 1.5784 2.2518 1.5605 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 4.0008 0.8705 0.6911 29 1 3.8547 1.0014 -1.0779 30 1 3.3131 5.6086 -1.9944 31 1 3.2530 5.4518 -0.2224 32 1 4.2051 6.7576 -0.9685 33 1 6.9249 8.0668 -1.5976 34 1 4.3445 3.0828 1.9961 35 1 4.4101 4.5771 1.0313 36 1 2.2975 4.4119 2.3578 37 1 1.9821 4.4289 0.6035 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597316941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:57 Heat of formation + Delta-G solvation = -64.778042 kcal Electronic energy + Delta-G solvation = -17945.552812 eV Core-core repulsion = 15233.874584 eV Total energy + Delta-G solvation = -2711.678228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13710 -37.64510 -36.21735 -35.50333 -32.74679 -31.68115 -29.95276 -27.23756 -25.48064 -24.60536 -23.31302 -22.41680 -20.21248 -18.48579 -18.04116 -17.45417 -17.04142 -16.39724 -16.10312 -16.08709 -15.36549 -14.95897 -14.75434 -14.34080 -14.06202 -13.92484 -13.72815 -13.28340 -13.07225 -12.86852 -12.76220 -12.57587 -12.49279 -12.29722 -12.27714 -12.02669 -11.98971 -11.71963 -11.09499 -10.72210 -10.59225 -10.34668 -9.85080 -8.63106 -8.20712 -6.27319 0.72611 1.38430 1.40025 1.49031 1.51530 1.78217 2.05313 2.43489 3.11965 3.56398 3.73727 3.89808 3.90363 4.07459 4.16575 4.34162 4.37823 4.54762 4.61918 4.66233 4.67848 4.72060 4.79701 4.86205 4.92206 5.01759 5.08010 5.18785 5.38926 5.39871 5.56309 5.68471 5.82785 6.10041 6.45661 6.80240 7.32817 7.42614 8.88268 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.037270 B = 0.005612 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.088953 B = 4988.233903 C = 5418.239794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.059 4.059 4 H 0.069 0.931 5 C 0.111 3.889 6 N -0.622 5.622 7 C 0.520 3.480 8 O -0.583 6.583 9 C 0.029 3.971 10 H 0.048 0.952 11 C -0.118 4.118 12 C -0.532 4.532 13 H 0.045 0.955 14 C 0.024 3.976 15 N -0.910 5.910 16 Si 0.952 3.048 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.280 1.280 20 C 0.102 3.898 21 C -0.101 4.101 22 S -0.248 6.248 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -9.255 9.004 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.189 4.189 4 H 0.088 0.912 5 C -0.013 4.013 6 N -0.356 5.356 7 C 0.312 3.688 8 O -0.462 6.462 9 C 0.008 3.992 10 H 0.066 0.934 11 C -0.176 4.176 12 C -0.570 4.570 13 H 0.064 0.936 14 C -0.175 4.175 15 N -0.548 5.548 16 Si 0.777 3.223 17 H -0.199 1.199 18 H -0.199 1.199 19 H -0.205 1.205 20 C -0.022 4.022 21 C -0.250 4.250 22 S -0.021 6.021 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.987 -9.808 9.381 17.462 hybrid contribution 1.356 1.009 -2.013 2.628 sum -9.632 -8.800 7.368 14.983 Atomic orbital electron populations 1.21769 0.94228 1.02612 1.02015 1.21353 0.97239 0.91292 1.03816 1.23641 0.97566 1.01051 0.96675 0.91222 1.21735 0.92328 0.83203 1.04046 1.48125 1.59467 1.14188 1.13809 1.21783 0.74897 0.90748 0.81413 1.90494 1.57086 1.64243 1.34366 1.18769 0.95404 0.86616 0.98458 0.93417 1.21676 0.95840 1.01209 0.98885 1.21252 1.31398 0.99822 1.04525 0.93624 1.25541 0.96526 0.96076 0.99402 1.69973 1.45013 1.07879 1.31971 0.85640 0.78449 0.77869 0.80296 1.19907 1.19938 1.20519 1.22008 0.95711 0.97760 0.86716 1.24000 0.96892 0.96692 1.07390 1.86538 1.69523 1.18057 1.28020 0.90813 0.92292 0.93169 0.89817 0.89906 0.88754 0.90106 0.96073 0.92067 0.92113 0.92508 0.88342 0.88223 0.84066 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.75 71.98 0.70 -1.90 16 2 C -0.10 -1.88 5.41 30.59 0.17 -1.72 16 3 C -0.06 -1.49 2.76 30.67 0.08 -1.40 16 4 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 5 C 0.11 3.26 5.52 86.48 0.48 3.74 16 6 N -0.62 -21.62 2.79 -821.52 -2.29 -23.92 16 7 C 0.52 23.96 6.95 87.66 0.61 24.57 16 8 O -0.58 -31.14 14.79 -3.05 -0.05 -31.19 16 9 C 0.03 1.42 1.65 -12.29 -0.02 1.40 16 10 H 0.05 2.43 7.06 -2.39 -0.02 2.42 16 11 C -0.12 -5.25 8.56 71.98 0.62 -4.63 16 12 C -0.53 -30.68 8.31 25.60 0.21 -30.46 16 13 H 0.05 2.84 6.78 -2.91 -0.02 2.82 16 14 C 0.02 1.35 5.28 84.65 0.45 1.80 16 15 N -0.91 -50.45 11.98 21.45 0.26 -50.20 16 16 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 C 0.10 2.83 5.35 86.48 0.46 3.29 16 21 C -0.10 -2.37 6.25 72.06 0.45 -1.92 16 22 S -0.25 -5.80 20.52 -56.49 -1.16 -6.96 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.10 7.18 -2.39 -0.02 1.08 16 25 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.08 2.72 6.88 -2.38 -0.02 2.71 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 2.18 4.10 -2.39 -0.01 2.17 16 32 H 0.06 2.92 6.83 -2.38 -0.02 2.90 16 33 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.10 3.07 4.75 -2.39 -0.01 3.06 16 36 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.08 2.11 6.59 -2.39 -0.02 2.09 16 Total: -1.00 -65.46 298.47 4.05 -61.41 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.05 Total: 11.36 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.21 Total: -7.25 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.03 Total: -74.11 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.05 Total: -31.19 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.16 Total: -6.96 kcal Total: -65.46 4.05 -61.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597316941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.368 kcal (2) G-P(sol) polarization free energy of solvation -65.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds