Wall clock time and date at job start Mon Mar 30 2020 04:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47186 * 2 1 4 4 H 1.08999 * 109.58157 * 304.72824 * 3 2 1 5 5 C 1.52724 * 109.65697 * 184.40805 * 3 2 1 6 6 N 1.46375 * 109.77036 * 182.65521 * 5 3 2 7 7 C 1.34777 * 119.64750 * 245.08801 * 6 5 3 8 8 O 1.21278 * 119.99778 * 3.96909 * 7 6 5 9 9 C 1.50698 * 120.00015 * 184.24941 * 7 6 5 10 10 H 1.09000 * 109.46808 * 324.17158 * 9 7 6 11 11 C 1.52994 * 109.47680 * 84.17112 * 9 7 6 12 12 C 1.50702 * 109.46980 * 204.17543 * 9 7 6 13 13 H 1.07992 * 120.00218 * 359.97438 * 12 9 7 14 14 C 1.37885 * 119.99542 * 179.97438 * 12 9 7 15 15 N 1.31508 * 120.00377 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99479 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47208 * 90.00223 * 16 14 12 18 18 H 1.48496 * 109.46816 * 209.99911 * 16 14 12 19 19 H 1.48496 * 109.47092 * 329.99832 * 16 14 12 20 20 C 1.46381 * 120.70344 * 64.81412 * 6 5 3 21 21 C 1.53232 * 109.48911 * 295.18406 * 20 6 5 22 22 S 1.81741 * 109.58081 * 64.99798 * 3 2 1 23 23 H 1.09008 * 109.47085 * 300.00174 * 1 2 3 24 24 H 1.09004 * 109.47135 * 59.99498 * 1 2 3 25 25 H 1.08992 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46978 * 240.00359 * 2 1 3 27 27 H 1.08994 * 109.47072 * 119.99968 * 2 1 3 28 28 H 1.09007 * 109.32374 * 62.56684 * 5 3 2 29 29 H 1.08997 * 109.32536 * 302.75183 * 5 3 2 30 30 H 1.09003 * 109.47218 * 305.14426 * 11 9 7 31 31 H 1.09001 * 109.47044 * 65.13749 * 11 9 7 32 32 H 1.08997 * 109.47893 * 185.14515 * 11 9 7 33 33 H 0.97001 * 120.00305 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.46829 * 55.19145 * 20 6 5 35 35 H 1.09007 * 109.46700 * 175.18001 * 20 6 5 36 36 H 1.08997 * 109.58157 * 177.45154 * 21 20 6 37 37 H 1.09000 * 109.58679 * 297.86482 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6103 1.9819 -0.8440 5 6 3.5633 1.4489 -0.1105 6 7 4.0586 2.8248 -0.0472 7 6 4.6700 3.3634 -1.1207 8 8 4.7437 2.7348 -2.1553 9 6 5.2678 4.7440 -1.0336 10 1 4.6432 5.3708 -0.3971 11 6 6.6743 4.6543 -0.4384 12 6 5.3434 5.3466 -2.4129 13 1 4.9940 4.7857 -3.2671 14 6 5.8587 6.6140 -2.5841 15 7 6.2846 7.2968 -1.5440 16 14 5.9531 7.3606 -4.2938 17 1 4.6984 8.1012 -4.5805 18 1 7.1058 8.2941 -4.3633 19 1 6.1302 6.2799 -5.2968 20 6 3.8915 3.6241 1.1677 21 6 2.3994 3.8650 1.4200 22 16 1.5608 2.2580 1.5519 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8580 1.0000 -1.0592 29 1 3.9870 0.8719 0.7114 30 1 6.6311 4.1360 0.5196 31 1 7.3229 4.1041 -1.1201 32 1 7.0711 5.6586 -0.2905 33 1 6.6475 8.1882 -1.6645 34 1 4.3219 3.0909 2.0154 35 1 4.3985 4.5813 1.0454 36 1 2.2711 4.4214 2.3485 37 1 1.9754 4.4313 0.5908 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597316944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:00 Heat of formation + Delta-G solvation = -48.266997 kcal Electronic energy + Delta-G solvation = -17871.567085 eV Core-core repulsion = 15160.604830 eV Total energy + Delta-G solvation = -2710.962255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46324 -36.23133 -34.77807 -33.78333 -30.83365 -30.41811 -28.68147 -25.23112 -24.19417 -23.29860 -21.69246 -21.32266 -18.62203 -16.95385 -16.41480 -15.75720 -15.44970 -15.08113 -14.90769 -14.45365 -13.85528 -13.54217 -13.12246 -13.06960 -12.92512 -12.45043 -12.28651 -11.86436 -11.57226 -11.52804 -11.28005 -11.09309 -11.01637 -10.75593 -10.75135 -10.64998 -10.29921 -10.05236 -9.62474 -9.02998 -8.67103 -8.41774 -8.36805 -7.54447 -6.09395 -4.12438 1.79868 2.58215 3.29648 3.35774 3.40233 3.49639 3.57144 4.41589 4.66639 4.83470 5.02670 5.05039 5.16317 5.24250 5.29351 5.44350 5.47356 5.62050 5.67810 5.82289 5.86258 5.88420 5.99326 6.09302 6.14652 6.19698 6.59608 6.76791 6.88957 6.99000 7.36350 7.69071 7.86785 7.99822 8.28584 8.93016 9.08619 9.52648 10.98374 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.031342 B = 0.005666 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.153302 B = 4940.744598 C = 5192.741125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.062 4.062 4 H 0.090 0.910 5 C 0.113 3.887 6 N -0.631 5.631 7 C 0.523 3.477 8 O -0.542 6.542 9 C 0.031 3.969 10 H 0.049 0.951 11 C -0.128 4.128 12 C -0.502 4.502 13 H 0.069 0.931 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.107 3.893 21 C -0.100 4.100 22 S -0.268 6.268 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.012 0.988 31 H 0.035 0.965 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 -9.373 7.985 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.192 4.192 4 H 0.108 0.892 5 C -0.012 4.012 6 N -0.367 5.367 7 C 0.314 3.686 8 O -0.417 6.417 9 C 0.010 3.990 10 H 0.066 0.934 11 C -0.187 4.187 12 C -0.541 4.541 13 H 0.087 0.913 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.018 4.018 21 C -0.249 4.249 22 S -0.041 6.041 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.246 -9.908 8.277 15.319 hybrid contribution 0.691 1.014 -1.716 2.110 sum -7.555 -8.894 6.561 13.388 Atomic orbital electron populations 1.21799 0.95036 1.01547 1.02604 1.21328 0.96651 0.93139 1.02934 1.23596 0.99352 0.99307 0.96939 0.89185 1.21439 0.90897 0.84858 1.03995 1.48218 1.60450 1.13114 1.14882 1.22156 0.75309 0.89937 0.81159 1.90523 1.58294 1.63545 1.29366 1.18920 0.94131 0.86556 0.99410 0.93364 1.21700 0.97590 1.03320 0.96049 1.21059 1.41215 0.99783 0.92006 0.91297 1.24925 0.95047 0.96818 0.97219 1.69863 1.42230 1.12039 1.29238 0.86458 0.77551 0.78932 0.84356 1.20656 1.21159 1.19718 1.21806 0.94040 0.98353 0.87637 1.23918 0.98576 0.96106 1.06294 1.86540 1.69237 1.18489 1.29871 0.91755 0.92602 0.92626 0.90480 0.90971 0.88301 0.91025 0.96895 0.94538 0.88963 0.92861 0.90759 0.86915 0.86963 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.74 37.16 0.36 -1.17 16 2 C -0.10 -1.10 5.42 -26.73 -0.14 -1.25 16 3 C -0.06 -0.85 2.75 -26.87 -0.07 -0.92 16 4 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 5 C 0.11 1.74 5.47 -4.25 -0.02 1.71 16 6 N -0.63 -11.28 2.80 -173.91 -0.49 -11.77 16 7 C 0.52 11.87 6.77 -10.99 -0.07 11.79 16 8 O -0.54 -14.01 15.11 5.56 0.08 -13.93 16 9 C 0.03 0.75 1.78 -92.93 -0.17 0.58 16 10 H 0.05 1.17 6.23 -51.93 -0.32 0.85 16 11 C -0.13 -2.97 8.70 37.15 0.32 -2.65 16 12 C -0.50 -14.04 8.33 -34.44 -0.29 -14.32 16 13 H 0.07 2.04 7.02 -52.49 -0.37 1.67 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -24.56 11.38 55.43 0.63 -23.93 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.11 1.60 5.91 -3.99 -0.02 1.58 16 21 C -0.10 -1.34 6.67 37.28 0.25 -1.09 16 22 S -0.27 -3.57 20.48 -107.50 -2.20 -5.78 16 23 H 0.06 0.69 7.14 -51.92 -0.37 0.32 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.66 6.90 -51.92 -0.36 1.31 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.01 0.24 7.83 -51.93 -0.41 -0.16 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 2.29 6.23 -51.93 -0.32 1.97 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.11 1.83 5.04 -51.92 -0.26 1.56 16 36 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -29.89 303.57 -8.15 -38.04 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.78 Total: 0.45 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.05 Total: -4.17 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.14 Total: -35.70 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.20 Total: -5.78 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.89 -8.15 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597316944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.231 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds