Wall clock time and date at job start Mon Mar 30 2020 04:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47408 * 2 1 4 4 H 1.08997 * 109.69412 * 54.64928 * 3 2 1 5 5 C 1.53235 * 109.58611 * 175.00175 * 3 2 1 6 6 N 1.46378 * 109.49109 * 177.45109 * 5 3 2 7 7 C 1.34767 * 119.65006 * 114.92770 * 6 5 3 8 8 O 1.21280 * 120.00142 * 177.05152 * 7 6 5 9 9 C 1.50696 * 120.00127 * 357.05767 * 7 6 5 10 10 H 1.08998 * 109.47461 * 51.71787 * 9 7 6 11 11 C 1.53002 * 109.46997 * 291.71843 * 9 7 6 12 12 C 1.50703 * 109.47676 * 171.72037 * 9 7 6 13 13 H 1.08008 * 119.99418 * 5.27846 * 12 9 7 14 14 C 1.37871 * 120.00563 * 185.28242 * 12 9 7 15 15 N 1.31521 * 119.99640 * 5.35767 * 14 12 9 16 16 Si 1.86795 * 120.00249 * 185.36782 * 14 12 9 17 17 H 1.48496 * 109.47549 * 94.99665 * 16 14 12 18 18 H 1.48502 * 109.46774 * 214.99712 * 16 14 12 19 19 H 1.48497 * 109.46976 * 334.99166 * 16 14 12 20 20 C 1.46378 * 120.70219 * 294.91130 * 6 5 3 21 21 C 1.53240 * 109.48780 * 65.08967 * 20 6 5 22 22 S 1.81743 * 109.58072 * 294.31257 * 3 2 1 23 23 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46846 * 300.00078 * 1 2 3 25 25 H 1.08999 * 109.47031 * 60.00299 * 1 2 3 26 26 H 1.09006 * 109.47664 * 239.99993 * 2 1 3 27 27 H 1.08995 * 109.47369 * 120.00064 * 2 1 3 28 28 H 1.08996 * 109.47148 * 57.44294 * 5 3 2 29 29 H 1.08997 * 109.46718 * 297.45244 * 5 3 2 30 30 H 1.08999 * 109.47325 * 175.54574 * 11 9 7 31 31 H 1.09001 * 109.47011 * 295.54519 * 11 9 7 32 32 H 1.08998 * 109.46838 * 55.54644 * 11 9 7 33 33 H 0.96999 * 119.99736 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.46931 * 185.09259 * 20 6 5 35 35 H 1.09000 * 109.46933 * 305.08198 * 20 6 5 36 36 H 1.08999 * 109.58603 * 62.13337 * 21 20 6 37 37 H 1.09004 * 109.58366 * 182.55065 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6027 1.9867 0.8370 5 6 3.5672 1.4473 0.1258 6 7 4.0580 2.8250 0.0645 7 6 4.6576 3.3677 1.1425 8 8 5.1143 4.4896 1.0818 9 6 4.7608 2.5806 2.4234 10 1 5.1919 1.6015 2.2144 11 6 3.3664 2.4054 3.0281 12 6 5.6416 3.3195 3.3977 13 1 6.0131 4.3032 3.1509 14 6 5.9732 2.7400 4.6039 15 7 5.6095 1.5025 4.8609 16 14 6.9386 3.7125 5.8734 17 1 5.9983 4.3394 6.8367 18 1 7.8579 2.8009 6.6009 19 1 7.7272 4.7701 5.1917 20 6 3.9047 3.6194 -1.1554 21 6 2.4155 3.8593 -1.4255 22 16 1.5785 2.2517 -1.5605 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.0009 0.8705 -0.6911 29 1 3.8547 1.0014 1.0779 30 1 3.4305 1.7697 3.9112 31 1 2.9676 3.3799 3.3100 32 1 2.7076 1.9418 2.2938 33 1 5.8431 1.0946 5.7094 34 1 4.4102 4.5770 -1.0312 35 1 4.3446 3.0828 -1.9960 36 1 1.9822 4.4289 -0.6034 37 1 2.2976 4.4119 -2.3576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597316946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:02 Heat of formation + Delta-G solvation = -47.458743 kcal Electronic energy + Delta-G solvation = -18089.402774 eV Core-core repulsion = 15378.475567 eV Total energy + Delta-G solvation = -2710.927207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52298 -36.29664 -34.54381 -33.78202 -31.45733 -29.87514 -28.74431 -25.19750 -23.97291 -23.59376 -21.67295 -21.25178 -18.71761 -16.78901 -16.31864 -15.97664 -15.46131 -15.16451 -14.72636 -14.45422 -13.83464 -13.58614 -13.21686 -13.06717 -12.97277 -12.30504 -12.22906 -11.91542 -11.63010 -11.47214 -11.27120 -11.07589 -10.98617 -10.84280 -10.62530 -10.58769 -10.38038 -9.99625 -9.65034 -9.01855 -8.62634 -8.45554 -8.37044 -7.54800 -6.09927 -4.10003 1.79149 2.57175 3.30814 3.37247 3.41722 3.48678 3.57216 4.43333 4.67929 4.87012 5.02047 5.08385 5.13792 5.26054 5.33504 5.37534 5.51683 5.68115 5.70263 5.76997 5.91595 5.94723 5.99499 6.10118 6.14916 6.26028 6.53122 6.71113 6.80341 6.97790 7.33818 7.59458 7.88126 7.95320 8.29611 8.98374 9.08831 9.54941 11.00378 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.006414 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.246112 B = 4364.456637 C = 5093.633171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.065 4.065 4 H 0.097 0.903 5 C 0.111 3.889 6 N -0.631 5.631 7 C 0.521 3.479 8 O -0.540 6.540 9 C 0.030 3.970 10 H 0.057 0.943 11 C -0.133 4.133 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.109 3.891 21 C -0.097 4.097 22 S -0.268 6.268 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -3.378 -10.785 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.194 4.194 4 H 0.115 0.885 5 C -0.014 4.014 6 N -0.367 5.367 7 C 0.313 3.687 8 O -0.415 6.415 9 C 0.009 3.991 10 H 0.074 0.926 11 C -0.191 4.191 12 C -0.542 4.542 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.016 4.016 21 C -0.246 4.246 22 S -0.041 6.041 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.098 -3.260 -11.504 15.024 hybrid contribution 1.094 0.926 1.634 2.173 sum -8.004 -2.333 -9.870 12.920 Atomic orbital electron populations 1.21794 0.95080 1.01608 1.02483 1.21348 0.96631 0.93019 1.03261 1.23838 0.99348 0.99587 0.96646 0.88486 1.21886 0.91040 0.83617 1.04888 1.48198 1.61198 1.13760 1.13505 1.22150 0.74287 0.87246 0.85017 1.90520 1.46868 1.20504 1.83646 1.18867 0.95760 0.96352 0.88093 0.92577 1.21863 0.95365 1.00662 1.01252 1.21120 1.29270 1.03493 1.00313 0.90854 1.24937 0.95944 0.94831 0.98321 1.69925 1.47269 1.12187 1.24074 0.86465 0.79782 0.79937 0.81238 1.20685 1.21260 1.19688 1.21466 0.93727 0.98483 0.87963 1.23852 0.98697 0.96340 1.05754 1.86562 1.69688 1.18361 1.29533 0.92579 0.92518 0.91960 0.90967 0.89958 0.90833 0.87006 0.90207 0.94684 0.95877 0.92926 0.88162 0.90967 0.89733 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.75 37.16 0.36 -1.20 16 2 C -0.10 -1.15 5.41 -26.73 -0.14 -1.29 16 3 C -0.06 -0.86 2.34 -26.61 -0.06 -0.92 16 4 H 0.10 1.44 6.59 -51.93 -0.34 1.10 16 5 C 0.11 1.67 4.64 -3.99 -0.02 1.65 16 6 N -0.63 -11.19 2.79 -173.60 -0.48 -11.68 16 7 C 0.52 11.79 6.95 -10.99 -0.08 11.72 16 8 O -0.54 -13.93 14.80 5.56 0.08 -13.85 16 9 C 0.03 0.73 1.65 -92.92 -0.15 0.58 16 10 H 0.06 1.41 7.05 -51.93 -0.37 1.04 16 11 C -0.13 -2.95 8.56 37.16 0.32 -2.63 16 12 C -0.50 -14.12 8.30 -34.44 -0.29 -14.41 16 13 H 0.07 2.19 6.79 -52.48 -0.36 1.83 16 14 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 15 N -0.90 -24.76 11.98 55.43 0.66 -24.09 16 16 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.11 1.64 6.23 -3.98 -0.02 1.61 16 21 C -0.10 -1.27 6.67 37.28 0.25 -1.02 16 22 S -0.27 -3.51 20.52 -107.50 -2.21 -5.72 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.67 7.18 -51.93 -0.37 0.30 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 1.83 4.75 -51.93 -0.25 1.58 16 30 H 0.08 1.91 6.83 -51.93 -0.35 1.55 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.42 4.10 -51.93 -0.21 0.21 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.10 1.65 6.87 -51.93 -0.36 1.30 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -29.98 298.48 -7.95 -37.92 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.55 Total: 0.64 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.34 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.18 Total: -35.77 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.21 Total: -5.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.98 -7.95 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597316946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.534 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds