Wall clock time and date at job start Mon Mar 30 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46778 * 2 1 4 4 C 1.50696 * 109.47410 * 120.00057 * 2 1 3 5 5 H 1.07999 * 119.99822 * 119.99704 * 4 2 1 6 6 C 1.37876 * 120.00339 * 299.99849 * 4 2 1 7 7 N 1.31514 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00303 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46819 * 60.00191 * 8 6 4 10 10 H 1.48494 * 109.47291 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47256 * 300.00344 * 8 6 4 12 12 C 1.50702 * 109.46721 * 240.00510 * 2 1 3 13 13 O 1.21282 * 119.99684 * 239.99516 * 12 2 1 14 14 N 1.34769 * 120.00461 * 59.99452 * 12 2 1 15 15 C 1.46500 * 120.00237 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.52999 * 110.30361 * 65.71804 * 16 15 14 18 18 C 1.53711 * 110.33894 * 188.00037 * 16 15 14 19 19 C 1.52935 * 112.48986 * 116.04511 * 18 16 15 20 20 C 1.55152 * 108.95907 * 30.10347 * 19 18 16 21 21 S 1.83396 * 110.34168 * 303.54550 * 16 15 14 22 22 H 1.09001 * 109.47109 * 299.99527 * 1 2 3 23 23 H 1.08992 * 109.47514 * 59.99713 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 0.97000 * 120.00534 * 180.02562 * 7 6 4 26 26 H 0.97010 * 119.99854 * 0.02562 * 14 12 2 27 27 H 1.08993 * 109.47452 * 60.00368 * 15 14 12 28 28 H 1.09000 * 109.47175 * 300.00158 * 15 14 12 29 29 H 1.08998 * 109.47247 * 60.69954 * 17 16 15 30 30 H 1.08997 * 109.46972 * 180.69640 * 17 16 15 31 31 H 1.08995 * 109.47178 * 300.69664 * 17 16 15 32 32 H 1.09000 * 108.88861 * 236.84379 * 18 16 15 33 33 H 1.09003 * 108.88658 * 355.25505 * 18 16 15 34 34 H 1.08997 * 109.60903 * 270.17319 * 19 18 16 35 35 H 1.09004 * 109.45395 * 149.93981 * 19 18 16 36 36 H 1.09009 * 111.13134 * 200.64674 * 20 19 18 37 37 H 1.09000 * 111.13558 * 76.46949 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 3.8066 -1.1209 4.0080 10 1 1.8273 -0.4200 5.2204 11 1 1.8261 -2.5202 4.0077 12 6 2.0322 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7066 -0.2499 -2.4546 15 6 2.1944 -0.9408 -3.6508 16 6 1.6848 -0.2190 -4.9000 17 6 2.2987 1.1793 -4.9927 18 6 2.0151 -1.0346 -6.1604 19 6 0.7608 -1.5181 -6.8897 20 6 -0.3838 -0.4973 -6.6549 21 16 -0.1457 -0.1111 -4.8719 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 0.7089 1.1612 3.4844 26 1 1.1491 0.5390 -2.5435 27 1 1.8307 -1.9683 -3.6507 28 1 3.2844 -0.9412 -3.6511 29 1 3.3834 1.0963 -5.0599 30 1 1.9175 1.6854 -5.8797 31 1 2.0325 1.7526 -4.1048 32 1 2.6007 -0.4142 -6.8387 33 1 2.6125 -1.9003 -5.8739 34 1 0.4659 -2.4936 -6.5029 35 1 0.9686 -1.5955 -7.9569 36 1 -1.3585 -0.9523 -6.8317 37 1 -0.2498 0.3919 -7.2708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597376503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:58 Heat of formation + Delta-G solvation = -56.702871 kcal Electronic energy + Delta-G solvation = -17456.532735 eV Core-core repulsion = 14745.204673 eV Total energy + Delta-G solvation = -2711.328062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.95239 -37.27441 -34.18129 -33.64813 -31.60359 -30.19783 -27.28390 -26.05349 -25.04330 -22.92554 -21.81393 -20.45797 -19.09803 -16.86374 -16.16712 -15.93690 -15.62449 -14.88668 -14.64828 -14.38012 -14.18900 -13.77856 -13.26833 -13.05345 -12.83351 -12.63330 -12.32106 -11.83721 -11.67003 -11.33390 -11.26166 -11.15006 -10.93529 -10.88270 -10.65748 -10.60476 -10.17234 -9.90270 -9.85511 -8.90961 -8.54923 -8.36501 -8.25313 -7.73371 -5.96468 -3.99498 1.68816 2.22213 3.40546 3.42594 3.48220 3.81821 3.92158 4.32073 4.41191 4.53349 4.59144 4.74947 4.89974 4.97653 5.26524 5.34813 5.36495 5.48650 5.59669 5.64033 5.72078 5.77266 5.84355 5.93996 6.06408 6.36119 6.73290 6.94047 7.02144 7.13149 7.56138 7.83874 8.05781 8.22378 8.51921 9.08896 9.31508 9.65578 11.11109 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.004708 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.660316 B = 5945.464197 C = 6172.521766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.549 6.549 14 N -0.742 5.742 15 C 0.144 3.856 16 C -0.024 4.024 17 C -0.132 4.132 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.077 4.077 21 S -0.270 6.270 22 H 0.092 0.908 23 H 0.012 0.988 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.396 0.604 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 0.452 -20.203 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.425 6.425 14 N -0.397 5.397 15 C 0.018 3.982 16 C -0.135 4.135 17 C -0.191 4.191 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.225 4.225 21 S -0.042 6.042 22 H 0.111 0.889 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.231 0.769 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.122 0.878 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.477 0.075 -19.066 19.123 hybrid contribution 0.746 -0.247 -0.202 0.811 sum -0.731 -0.171 -19.269 19.283 Atomic orbital electron populations 1.21721 0.96452 0.99832 1.00893 1.18857 0.94211 0.96735 0.89317 0.93143 1.21106 1.30916 1.12760 0.89037 0.90890 1.24949 0.95159 0.95093 0.99062 1.69869 1.37107 1.23134 1.23539 0.86511 0.79224 0.79728 0.81685 1.20247 1.21412 1.20225 1.21961 0.78334 0.84239 0.84399 1.90519 1.38198 1.26945 1.86808 1.46295 1.55353 1.32728 1.05341 1.21194 0.98648 0.95952 0.82411 1.23551 0.92733 0.99141 0.98028 1.22035 1.00529 0.93597 1.02978 1.22100 0.98774 1.00588 0.94663 1.22365 0.93214 0.99514 1.01110 1.24332 1.02101 1.01572 0.94515 1.88208 1.08422 1.94161 1.13445 0.88935 0.96853 0.95032 0.92974 0.76880 0.91302 0.91190 0.91520 0.91943 0.91223 0.90621 0.89850 0.90311 0.90295 0.87811 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.87 37.16 0.33 -2.85 16 2 C 0.03 0.77 2.64 -92.92 -0.25 0.53 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.58 8.37 -34.44 -0.29 -14.86 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.76 11.32 55.43 0.63 -25.13 16 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.52 12.36 7.15 -10.99 -0.08 12.28 16 13 O -0.55 -14.72 15.46 5.56 0.09 -14.64 16 14 N -0.74 -13.69 4.91 -60.29 -0.30 -13.99 16 15 C 0.14 2.19 4.39 -4.04 -0.02 2.17 16 16 C -0.02 -0.28 0.84 -90.25 -0.08 -0.36 16 17 C -0.13 -1.38 8.26 37.16 0.31 -1.07 16 18 C -0.12 -1.07 5.74 -26.40 -0.15 -1.23 16 19 C -0.12 -0.96 6.34 -25.63 -0.16 -1.12 16 20 C -0.08 -0.66 7.52 38.30 0.29 -0.37 16 21 S -0.27 -3.45 21.15 -107.50 -2.27 -5.72 16 22 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 23 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.40 6.83 6.52 -40.82 -0.27 6.57 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.81 7.28 -51.93 -0.38 0.44 16 32 H 0.08 0.55 7.62 -51.93 -0.40 0.16 16 33 H 0.08 0.73 7.62 -51.93 -0.40 0.33 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -32.00 308.29 -8.28 -40.28 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.86 Total: 2.62 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.32 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.33 Total: -39.12 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.09 Total: -14.64 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.27 Total: -5.72 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.00 -8.28 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597376503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.423 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds