Wall clock time and date at job start Mon Mar 30 2020 04:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 C 1.50696 * 109.47505 * 120.00678 * 2 1 3 13 13 O 1.21281 * 119.99992 * 119.99863 * 12 2 1 14 14 N 1.34778 * 119.99830 * 299.99869 * 12 2 1 15 15 C 1.46506 * 119.99945 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46955 * 180.02562 * 15 14 12 17 17 C 1.53000 * 110.35939 * 300.70354 * 16 15 14 18 18 C 1.54273 * 110.39816 * 178.37829 * 16 15 14 19 19 C 1.53862 * 108.92681 * 213.25538 * 18 16 15 20 20 C 1.55135 * 106.89861 * 47.25139 * 19 18 16 21 21 S 1.83102 * 110.40175 * 63.02693 * 16 15 14 22 22 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 23 23 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 24 24 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 25 25 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 26 26 H 0.96998 * 120.00160 * 0.02562 * 14 12 2 27 27 H 1.09000 * 109.46973 * 300.00268 * 15 14 12 28 28 H 1.09002 * 109.46843 * 60.00387 * 15 14 12 29 29 H 1.08998 * 109.47519 * 59.29736 * 17 16 15 30 30 H 1.09000 * 109.46918 * 179.30112 * 17 16 15 31 31 H 1.09001 * 109.46637 * 299.29529 * 17 16 15 32 32 H 1.08998 * 109.61269 * 333.17558 * 18 16 15 33 33 H 1.09000 * 109.61119 * 93.33768 * 18 16 15 34 34 H 1.08996 * 109.97289 * 166.61944 * 19 18 16 35 35 H 1.09002 * 109.96894 * 287.89676 * 19 18 16 36 36 H 1.08997 * 110.85310 * 76.06439 * 20 19 18 37 37 H 1.08999 * 110.85671 * 199.50254 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 3.1471 -2.2860 -3.6041 10 1 1.1613 -1.5953 -4.8129 11 1 3.1362 -0.1881 -4.8200 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7068 -0.2502 2.4545 15 6 2.1948 -0.9412 3.6506 16 6 1.6844 -0.2204 4.8999 17 6 2.1688 1.2309 4.9123 18 6 2.1527 -0.9546 6.1734 19 6 1.0716 -0.8104 7.2586 20 6 -0.2872 -1.1440 6.5886 21 16 -0.1441 -0.2836 4.9710 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.6955 1.1524 -3.4842 26 1 1.1489 0.5382 2.5436 27 1 1.8311 -1.9688 3.6503 28 1 3.2848 -0.9416 3.6507 29 1 1.8058 1.7427 4.0211 30 1 1.7871 1.7337 5.8009 31 1 3.2586 1.2500 4.9239 32 1 2.3090 -2.0101 5.9506 33 1 3.0860 -0.5159 6.5263 34 1 1.2664 -1.5080 8.0732 35 1 1.0588 0.2114 7.6379 36 1 -0.3973 -2.2194 6.4489 37 1 -1.1163 -0.7433 7.1719 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597376506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:59 Heat of formation + Delta-G solvation = -77.472308 kcal Electronic energy + Delta-G solvation = -17447.191900 eV Core-core repulsion = 14734.963207 eV Total energy + Delta-G solvation = -2712.228693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67066 -38.35771 -35.78879 -35.46025 -32.96546 -31.92564 -28.00471 -27.32915 -27.11041 -24.47749 -22.99158 -21.52365 -20.73151 -18.46274 -18.06041 -17.26850 -16.81598 -16.59331 -16.10303 -15.96495 -15.14032 -14.92785 -14.74377 -14.35657 -14.16691 -13.90960 -13.48488 -13.42302 -12.97980 -12.74426 -12.66554 -12.61161 -12.34505 -12.23532 -12.15472 -12.06609 -11.95769 -11.61690 -11.04271 -10.76844 -10.61716 -10.32208 -9.96437 -8.70121 -8.14963 -6.25911 0.79090 1.39724 1.41170 1.45804 1.55216 1.92172 2.34595 2.52755 3.14161 3.48077 3.59088 3.80030 3.97898 4.05920 4.31844 4.34147 4.52381 4.64325 4.68110 4.72256 4.76516 4.81626 4.85692 4.93618 4.98256 4.99810 5.01989 5.14189 5.29138 5.47451 5.55297 5.73406 5.92067 6.19458 6.69298 6.84626 7.39233 7.51910 8.91198 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.044246 B = 0.004639 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.675600 B = 6034.141457 C = 6232.141220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.024 3.976 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.587 6.587 14 N -0.720 5.720 15 C 0.141 3.859 16 C -0.011 4.011 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.063 4.063 21 S -0.347 6.347 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.020 0.980 25 H 0.265 0.735 26 H 0.404 0.596 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 0.637 22.158 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.311 3.689 13 O -0.467 6.467 14 N -0.373 5.373 15 C 0.015 3.985 16 C -0.121 4.121 17 C -0.188 4.188 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.211 4.211 21 S -0.121 6.121 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.240 0.760 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.110 0.433 21.202 21.235 hybrid contribution 0.694 -0.505 -0.467 0.978 sum -0.416 -0.072 20.734 20.738 Atomic orbital electron populations 1.21521 0.95317 0.99226 1.01353 1.18803 0.95104 0.95944 0.89870 0.94223 1.21306 1.31485 1.12777 0.91045 0.93270 1.25635 0.95146 0.95778 1.01526 1.69965 1.36999 1.23906 1.24269 0.85499 0.78332 0.78575 0.79213 1.20385 1.19938 1.19808 1.21501 0.78182 0.83691 0.85495 1.90494 1.40114 1.28554 1.87539 1.46005 1.54063 1.32387 1.04870 1.21377 0.98707 0.95444 0.82931 1.23547 0.91063 1.00208 0.97303 1.21930 1.01906 0.91802 1.03147 1.22478 1.01079 1.01120 0.91316 1.22534 0.90384 1.04370 0.98141 1.24420 1.02320 1.02386 0.91931 1.88184 1.11180 1.79000 1.33690 0.93819 0.90892 0.96033 0.92588 0.75989 0.92824 0.91113 0.93154 0.89783 0.90288 0.90547 0.87528 0.87308 0.89422 0.89042 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.86 71.98 0.64 -5.04 16 2 C 0.02 1.27 2.64 -12.29 -0.03 1.23 16 3 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -31.59 8.38 25.60 0.21 -31.37 16 5 H 0.05 3.14 6.75 -2.91 -0.02 3.12 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -52.52 11.30 21.45 0.24 -52.27 16 8 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 9 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.52 25.27 7.15 87.66 0.63 25.90 16 13 O -0.59 -32.49 15.46 -3.03 -0.05 -32.54 16 14 N -0.72 -26.54 4.95 -463.05 -2.29 -28.83 16 15 C 0.14 4.23 4.53 86.38 0.39 4.62 16 16 C -0.01 -0.24 0.77 -10.36 -0.01 -0.25 16 17 C -0.13 -2.44 8.36 71.98 0.60 -1.84 16 18 C -0.12 -1.73 5.47 31.32 0.17 -1.56 16 19 C -0.12 -1.23 6.46 31.62 0.20 -1.03 16 20 C -0.06 -0.94 7.39 72.71 0.54 -0.40 16 21 S -0.35 -8.47 21.63 -56.49 -1.22 -9.69 16 22 H 0.04 1.81 7.56 -2.39 -0.02 1.79 16 23 H 0.07 3.88 6.05 -2.39 -0.01 3.87 16 24 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.40 13.70 6.43 -92.71 -0.60 13.11 16 27 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.12 6.88 -2.39 -0.02 1.11 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.16 7.85 -2.39 -0.02 1.15 16 33 H 0.11 1.14 7.88 -2.39 -0.02 1.12 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -70.55 308.61 2.96 -67.59 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.45 Total: 16.06 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 3.79 Total: -8.25 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.05 Total: -81.11 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.22 Total: -9.69 kcal Total: -70.55 2.96 -67.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597376506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.879 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds