Wall clock time and date at job start Mon Mar 30 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47042 * 2 1 4 4 C 1.50698 * 109.47206 * 120.00340 * 2 1 3 5 5 H 1.07998 * 119.99962 * 119.99903 * 4 2 1 6 6 C 1.37876 * 120.00041 * 300.00026 * 4 2 1 7 7 N 1.31517 * 120.00121 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99967 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46676 * 90.00349 * 8 6 4 10 10 H 1.48499 * 109.47304 * 209.99844 * 8 6 4 11 11 H 1.48492 * 109.47361 * 330.00508 * 8 6 4 12 12 C 1.50699 * 109.47031 * 240.00345 * 2 1 3 13 13 O 1.21280 * 120.00292 * 240.00103 * 12 2 1 14 14 N 1.34781 * 119.99978 * 59.99498 * 12 2 1 15 15 C 1.46499 * 119.99966 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47366 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.67862 * 300.32430 * 16 15 14 18 18 C 1.53090 * 109.57696 * 179.97438 * 16 15 14 19 19 C 1.52586 * 109.95469 * 177.16862 * 18 16 15 20 20 C 1.52584 * 110.72424 * 70.68033 * 19 18 16 21 21 C 1.53102 * 109.95273 * 289.31989 * 20 19 18 22 22 S 1.81747 * 108.83922 * 63.02849 * 21 20 19 23 23 H 1.09004 * 109.47317 * 59.99480 * 1 2 3 24 24 H 1.09001 * 109.47400 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47011 * 299.99568 * 1 2 3 26 26 H 0.97003 * 119.99593 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99762 * 0.02562 * 14 12 2 28 28 H 1.08997 * 109.47115 * 59.99952 * 15 14 12 29 29 H 1.09008 * 109.47211 * 300.00605 * 15 14 12 30 30 H 1.08995 * 109.38894 * 57.01967 * 18 16 15 31 31 H 1.09000 * 109.39568 * 297.31793 * 18 16 15 32 32 H 1.09002 * 109.22581 * 190.99728 * 19 18 16 33 33 H 1.08995 * 109.22678 * 310.35742 * 19 18 16 34 34 H 1.08997 * 109.39473 * 49.46946 * 20 19 18 35 35 H 1.09000 * 109.39002 * 169.17894 * 20 19 18 36 36 H 1.08999 * 109.57481 * 182.83614 * 21 20 19 37 37 H 1.08999 * 109.57745 * 303.09374 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9771 1.9952 3.9072 11 1 0.8490 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1194 14 7 1.7066 -0.2498 -2.4546 15 6 2.1944 -0.9407 -3.6508 16 6 1.6850 -0.2190 -4.9001 17 1 0.5950 -0.2113 -4.9006 18 6 2.1940 -0.9388 -6.1517 19 6 1.6336 -0.2678 -7.4023 20 6 2.2725 1.1017 -7.6126 21 6 1.7734 2.0804 -6.5462 22 16 2.3055 1.4892 -4.9120 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.9040 -0.5276 4.4375 27 1 1.1492 0.5390 -2.5435 28 1 1.8308 -1.9682 -3.6507 29 1 3.2845 -0.9412 -3.6510 30 1 1.8739 -1.9803 -6.1255 31 1 3.2829 -0.8969 -6.1756 32 1 1.8383 -0.8963 -8.2691 33 1 0.5558 -0.1482 -7.2931 34 1 3.3563 1.0104 -7.5411 35 1 2.0069 1.4771 -8.6009 36 1 2.1941 3.0686 -6.7319 37 1 0.6853 2.1343 -6.5807 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597492077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:12 Heat of formation + Delta-G solvation = -78.564528 kcal Electronic energy + Delta-G solvation = -17233.232521 eV Core-core repulsion = 14520.956466 eV Total energy + Delta-G solvation = -2712.276055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69645 -38.12422 -36.01005 -35.77578 -33.52789 -32.40833 -29.15755 -27.11330 -26.13125 -24.21566 -22.90376 -21.72170 -20.90544 -18.81077 -18.21472 -17.62060 -17.08189 -16.57453 -16.14354 -15.83887 -15.49866 -14.93240 -14.83613 -14.64205 -14.44784 -14.04688 -13.69248 -13.52668 -13.43166 -13.09711 -12.78135 -12.55338 -12.31395 -12.26386 -12.12329 -11.80811 -11.47033 -11.31612 -11.21963 -10.77619 -10.61073 -10.45363 -10.01701 -8.68644 -8.26744 -6.34554 0.72855 1.33514 1.40860 1.51829 1.60097 1.85766 2.32616 2.35631 3.06828 3.54470 3.71700 3.89309 3.97331 4.11594 4.14779 4.21935 4.42149 4.43083 4.55686 4.62745 4.66717 4.69633 4.76678 4.84855 4.98577 5.02279 5.05195 5.13650 5.16663 5.37578 5.44430 5.51061 5.52893 6.26568 6.65774 6.84043 7.26672 7.47863 8.91064 Molecular weight = 257.12amu Principal moments of inertia in cm(-1) A = 0.039893 B = 0.004672 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.711286 B = 5992.330191 C = 6387.919872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.029 0.971 6 C 0.007 3.993 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.258 1.258 10 H -0.299 1.299 11 H -0.234 1.234 12 C 0.528 3.472 13 O -0.585 6.585 14 N -0.720 5.720 15 C 0.138 3.862 16 C -0.044 4.044 17 H 0.108 0.892 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.074 4.074 22 S -0.307 6.307 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.412 0.588 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.374 7.775 -26.595 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.083 0.917 4 C -0.560 4.560 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.184 1.184 10 H -0.227 1.227 11 H -0.157 1.157 12 C 0.316 3.684 13 O -0.464 6.464 14 N -0.375 5.375 15 C 0.013 3.987 16 C -0.173 4.173 17 H 0.126 0.874 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.222 4.222 22 S -0.081 6.081 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.249 0.751 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.309 7.620 -25.563 27.197 hybrid contribution -0.766 -0.158 0.043 0.784 sum -6.075 7.462 -25.519 27.273 Atomic orbital electron populations 1.22000 0.94279 1.01710 1.01495 1.19257 0.95593 0.97303 0.90940 0.91712 1.21096 1.31666 1.12846 0.90387 0.95251 1.26032 0.97463 1.00703 0.94763 1.70081 1.47661 1.42832 0.98718 0.85695 0.78884 0.78983 0.77947 1.18354 1.22657 1.15692 1.21049 0.78472 0.83587 0.85301 1.90563 1.39724 1.28741 1.87408 1.45968 1.54466 1.32531 1.04507 1.21144 0.98961 0.96092 0.82477 1.23428 1.03451 0.93112 0.97279 0.87374 1.21745 1.01656 1.00138 0.91920 1.21505 1.00707 0.96376 0.97528 1.21723 1.01110 0.94352 0.98721 1.23551 1.04412 1.02420 0.91771 1.87571 1.78165 1.15576 1.26812 0.89798 0.93309 0.93555 0.92373 0.75056 0.90547 0.92770 0.89479 0.91089 0.89493 0.91003 0.91414 0.88825 0.87129 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 8.57 71.98 0.62 -4.77 16 2 C -0.01 -0.44 2.23 -12.29 -0.03 -0.47 16 3 H 0.07 2.93 7.20 -2.38 -0.02 2.92 16 4 C -0.52 -32.10 8.96 25.60 0.23 -31.87 16 5 H 0.03 2.12 7.00 -2.91 -0.02 2.10 16 6 C 0.01 0.40 5.45 84.65 0.46 0.86 16 7 N -0.95 -62.27 13.96 21.45 0.30 -61.97 16 8 Si 0.96 44.12 24.37 68.60 1.67 45.79 16 9 H -0.26 -10.98 6.87 99.48 0.68 -10.30 16 10 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.23 -9.45 6.53 99.48 0.65 -8.80 16 12 C 0.53 24.02 7.15 87.66 0.63 24.65 16 13 O -0.59 -32.50 15.46 -3.03 -0.05 -32.55 16 14 N -0.72 -23.61 5.17 -463.05 -2.39 -26.01 16 15 C 0.14 3.81 5.12 86.38 0.44 4.25 16 16 C -0.04 -0.83 2.65 30.62 0.08 -0.75 16 17 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.12 -1.66 5.04 30.49 0.15 -1.51 16 19 C -0.12 -1.23 5.61 30.32 0.17 -1.06 16 20 C -0.12 -1.21 5.75 30.49 0.18 -1.04 16 21 C -0.07 -0.93 6.46 72.02 0.46 -0.47 16 22 S -0.31 -6.46 20.95 -56.49 -1.18 -7.64 16 23 H 0.08 2.43 7.56 -2.38 -0.02 2.41 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.84 3.27 -2.38 -0.01 1.83 16 26 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 27 H 0.41 11.27 7.43 -92.71 -0.69 10.58 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.07 0.83 8.06 -2.39 -0.02 0.81 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.92 301.64 2.03 -76.90 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.28 Total: 17.65 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.39 Total: -12.17 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.09 Total: -87.98 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.05 Total: -32.55 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.79 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -1.18 Total: -7.64 kcal Total: -78.92 2.03 -76.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597492077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.668 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds